mRNA_F-serratus_M_contig80.19382.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig80.19382.1
Unique NamemRNA_F-serratus_M_contig80.19382.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: D7FWI4_ECTSI (Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID=D7FWI4_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 7.750e-78
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1 
Query:   28 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI 426
            SGKG  XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI 134
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: A0A7S2GSD6_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSD6_9STRA)

HSP 1 Score: 213 bits (543), Expect = 6.830e-69
Identity = 120/134 (89.55%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:   16 SSAQSGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 417
            S A SGKG XXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK  V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK +K
Sbjct:   13 SCAMSGKGGXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKHSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKQSK 146
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: A0A7S2LGK2_9STRA (Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGK2_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.060e-68
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:   28 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 417
            SGKG  XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK+ V S QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+ K
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKTSVMSSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSNK 131
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: F0XY44_AURAN (Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XY44_AURAN)

HSP 1 Score: 211 bits (536), Expect = 4.700e-68
Identity = 116/132 (87.88%), Postives = 126/132 (95.45%), Query Frame = 1 
Query:   28 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKR 423
            SGKG  XXXXXXXXXAPTSKKAPQ++S KAGLQFPVGR+HRFLK RV + QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK++KK+
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKKK 133
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: B7G2A5_PHATC (Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7G2A5_PHATC)

HSP 1 Score: 209 bits (533), Expect = 1.440e-67
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1 
Query:   28 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 420
            SGKG  XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK+ VH   RVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+NK+  K
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGK 132
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: B8BS24_THAPS (Histone H2A (Fragment) n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8BS24_THAPS)

HSP 1 Score: 207 bits (526), Expect = 1.290e-66
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:   73 APTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 420
            APT KKAPQSRSSKAGLQFPVGR+HRFLK  V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+T K
Sbjct:   10 APTIKKAPQSRSSKAGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSTGK 125
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: K0TER1_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER1_THAOC)

HSP 1 Score: 208 bits (530), Expect = 1.800e-66
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 1 
Query:   28 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 420
            SGKGXXXXXXXXXXXAPT KKAPQSRSSKAGLQFPVGR+HRFLK+ V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+  K
Sbjct:   47 SGKGXXXXXXXXXXXAPTIKKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQGK 177
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: A0A835Z1F5_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F5_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.760e-66
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 1 
Query:   85 KKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 420
            KKAPQSRS +AGLQFPVGRIHRFLKSRV + QRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL++KT KK
Sbjct:   28 KKAPQSRSQRAGLQFPVGRIHRFLKSRVQTQQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLISKTQKK 139
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: A0A482SNT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT5_9ARCH)

HSP 1 Score: 206 bits (525), Expect = 3.890e-66
Identity = 102/112 (91.07%), Postives = 109/112 (97.32%), Query Frame = 1 
Query:   76 PTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKT 411
            P SK+APQSRSS+AGLQFPVGRIHRFLK+RVHS QRVGAT+AVYT+AI+EYLTAEVLELAGNACKDLKVKRITPRHL LAIRGDEELDTLIKATIAGGGVIPHIHKSL+NKT
Sbjct:   25 PASKRAPQSRSSRAGLQFPVGRIHRFLKARVHSQQRVGATAAVYTSAIMEYLTAEVLELAGNACKDLKVKRITPRHLLLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT 136
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BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Match: A0A7S3PQG1_9STRA (Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQG1_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.240e-65
Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:   76 PTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKR 423
            PTSKKAPQSRSS+AGLQFPVGR+HRFLK+R+ S  RVGAT+AVYTAAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNK  K +
Sbjct:   15 PTSKKAPQSRSSRAGLQFPVGRVHRFLKARISSKNRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKGKKTK 130
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI4_ECTSI7.750e-7898.50Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID... [more]
A0A7S2GSD6_9STRA6.830e-6989.55Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
A0A7S2LGK2_9STRA1.060e-6890.77Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
F0XY44_AURAN4.700e-6887.88Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 Re... [more]
B7G2A5_PHATC1.440e-6788.55Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 Rep... [more]
B8BS24_THAPS1.290e-6689.66Histone H2A (Fragment) n=9 Tax=Bacillariophyta Tax... [more]
K0TER1_THAOC1.800e-6690.08Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A835Z1F5_9STRA3.760e-6692.86Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A482SNT5_9ARCH3.890e-6691.07Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3PQG1_9STRA3.240e-6588.79Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:488152..488580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue1e-59
Seed eggNOG ortholog2880.D7FWI4
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0040029,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin silencing
EggNOG OGsCOG5262@1,KOG1757@2759
Ec32 ortholog descriptionHistone H2A.Z
Ec32 orthologEc-26_006500.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932391.0106666-CDS-F-serratus_M_contig80:488151..4885801622932391.0106666-CDS-F-serratus_M_contig80:488151..488580Fucus serratus maleCDSF-serratus_M_contig80 488152..488580 -
1690964285.7038374-CDS-F-serratus_M_contig80:488151..4885801690964285.7038374-CDS-F-serratus_M_contig80:488151..488580Fucus serratus maleCDSF-serratus_M_contig80 488152..488580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19382.1prot_F-serratus_M_contig80.19382.1Fucus serratus malepolypeptideF-serratus_M_contig80 488152..488580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig80.19382.1

>prot_F-serratus_M_contig80.19382.1 ID=prot_F-serratus_M_contig80.19382.1|Name=mRNA_F-serratus_M_contig80.19382.1|organism=Fucus serratus male|type=polypeptide|length=143bp
MYFVTSSAQSGKGGKGGKGGKGGKAPTSKKAPQSRSSKAGLQFPVGRIHR
FLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPR
HLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI*
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mRNA from alignment at F-serratus_M_contig80:488152..488580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig80.19382.1 ID=mRNA_F-serratus_M_contig80.19382.1|Name=mRNA_F-serratus_M_contig80.19382.1|organism=Fucus serratus male|type=mRNA|length=429bp|location=Sequence derived from alignment at F-serratus_M_contig80:488152..488580- (Fucus serratus male)
ATGTATTTTGTGACCTCATCTGCGCAGTCTGGTAAGGGCGGCAAGGGTGG
AAAGGGGGGTAAGGGTGGCAAGGCCCCGACATCAAAGAAAGCCCCGCAGT
CTCGGTCTTCCAAGGCCGGCCTCCAGTTCCCGGTGGGTCGTATTCATCGA
TTCCTGAAGTCGCGTGTGCATTCCCACCAGCGCGTGGGTGCGACGTCGGC
GGTATACACGGCGGCAATTCTGGAATATTTGACGGCCGAGGTGCTCGAGT
TGGCGGGTAACGCATGTAAAGACCTGAAGGTGAAGCGTATCACGCCGCGG
CACTTGCAGCTCGCCATCCGAGGAGACGAAGAGCTGGACACCCTCATCAA
GGCCACCATCGCTGGCGGAGGTGTCATTCCTCACATCCACAAGTCGCTCG
TCAACAAGACCACAAAGAAGAGGATCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig80:488152..488580-

>mRNA_F-serratus_M_contig80.19382.1 ID=mRNA_F-serratus_M_contig80.19382.1|Name=mRNA_F-serratus_M_contig80.19382.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig80:488152..488580- (Fucus serratus male)
ATGTATTTTGTGACCTCATCTGCGCAGTCTGGTAAGGGCGGCAAGGGTGG
AAAGGGGGGTAAGGGTGGCAAGGCCCCGACATCAAAGAAAGCCCCGCAGT
CTCGGTCTTCCAAGGCCGGCCTCCAGTTCCCGGTGGGTCGTATTCATCGA
TTCCTGAAGTCGCGTGTGCATTCCCACCAGCGCGTGGGTGCGACGTCGGC
GGTATACACGGCGGCAATTCTGGAATATTTGACGGCCGAGGTGCTCGAGT
TGGCGGGTAACGCATGTAAAGACCTGAAGGTGAAGCGTATCACGCCGCGG
CACTTGCAGCTCGCCATCCGAGGAGACGAAGAGCTGGACACCCTCATCAA
GGCCACCATCGCTGGCGGAGGTGTCATTCCTCACATCCACAAGTCGCTCG
TCAACAAGACCACAAAGAAGAGGATCTAAATGTATTTTGTGACCTCATCT
GCGCAGTCTGGTAAGGGCGGCAAGGGTGGAAAGGGGGGTAAGGGTGGCAA
GGCCCCGACATCAAAGAAAGCCCCGCAGTCTCGGTCTTCCAAGGCCGGCC
TCCAGTTCCCGGTGGGTCGTATTCATCGATTCCTGAAGTCGCGTGTGCAT
TCCCACCAGCGCGTGGGTGCGACGTCGGCGGTATACACGGCGGCAATTCT
GGAATATTTGACGGCCGAGGTGCTCGAGTTGGCGGGTAACGCATGTAAAG
ACCTGAAGGTGAAGCGTATCACGCCGCGGCACTTGCAGCTCGCCATCCGA
GGAGACGAAGAGCTGGACACCCTCATCAAGGCCACCATCGCTGGCGGAGG
TGTCATTCCTCACATCCACAAGTCGCTCGTCAACAAGACCACAAAGAAGA
GGATCTAA
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