mRNA_F-serratus_M_contig8.19331.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19331.1
Unique NamemRNA_F-serratus_M_contig8.19331.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:911152..914578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7G1L0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2828
Cds size1851
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19331.1prot_F-serratus_M_contig8.19331.1Fucus serratus malepolypeptideF-serratus_M_contig8 912593..914443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.744068-UTR-F-serratus_M_contig8:911151..9119921622932370.744068-UTR-F-serratus_M_contig8:911151..911992Fucus serratus maleUTRF-serratus_M_contig8 911152..911992 -
1690964275.3127406-UTR-F-serratus_M_contig8:911151..9119921690964275.3127406-UTR-F-serratus_M_contig8:911151..911992Fucus serratus maleUTRF-serratus_M_contig8 911152..911992 -
1622932370.7588348-UTR-F-serratus_M_contig8:912591..9125921622932370.7588348-UTR-F-serratus_M_contig8:912591..912592Fucus serratus maleUTRF-serratus_M_contig8 912592..912592 -
1690964275.3271952-UTR-F-serratus_M_contig8:912591..9125921690964275.3271952-UTR-F-serratus_M_contig8:912591..912592Fucus serratus maleUTRF-serratus_M_contig8 912592..912592 -
1622932370.7852688-UTR-F-serratus_M_contig8:914443..9145781622932370.7852688-UTR-F-serratus_M_contig8:914443..914578Fucus serratus maleUTRF-serratus_M_contig8 914444..914578 -
1690964275.350089-UTR-F-serratus_M_contig8:914443..9145781690964275.350089-UTR-F-serratus_M_contig8:914443..914578Fucus serratus maleUTRF-serratus_M_contig8 914444..914578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.771707-CDS-F-serratus_M_contig8:912592..9144431622932370.771707-CDS-F-serratus_M_contig8:912592..914443Fucus serratus maleCDSF-serratus_M_contig8 912593..914443 -
1690964275.3397868-CDS-F-serratus_M_contig8:912592..9144431690964275.3397868-CDS-F-serratus_M_contig8:912592..914443Fucus serratus maleCDSF-serratus_M_contig8 912593..914443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19331.1

>prot_F-serratus_M_contig8.19331.1 ID=prot_F-serratus_M_contig8.19331.1|Name=mRNA_F-serratus_M_contig8.19331.1|organism=Fucus serratus male|type=polypeptide|length=617bp
MKDWYKYVPNMLPGSERVPLLTPSFGLAPVFLASRSVSGPICKSASCLRG
RDVDVLCSSTAGDDRLSAAAAARARVLQQQNIIADRRVKRSKEQKQRRQQ
QESRTKGHRDSLGNGLKDALYSQSRAIGDKIKRMRTNDWEGVLRELKHAE
RTLELEGFRVTLRIYATSIRHLAKCRRWREAVGVLHGIRAAGRSPNSDCL
SAAIDACRYARQWEQAVSLLRQERKIGTGVDAFCYSSAIAACGNAGQWEL
AVSLLREMEASGTPPNVVTFNSAITACGNAGRWREAVSLLREMESLQIKP
SPISFNSAIAACHAGHWQEALSLMREMVAKGYSPDVVTYNSAITACGGRW
EEAVSLLGEMEVEGITPDVISYSAAIKACGKGGQPEEAVSLLREMVTRDI
RPNVVTFNSAITAVGEAGQWEESVSLLREMDAEGITPDVISYSAAITACG
NGGQPSRALALLREMEARGISPNVISYSASIAACRNGGWPTEAVSLLREM
ATKGVSPNETTFNSAITAVGDTGRWQEAMSLFREMETSGISPSQISFNSA
IEACAIGGQSGLAVSLLEEMASKGIARDIVSYHLTIKAHDVCINDTPPSL
RSNCLETMSFSGRCNA*
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mRNA from alignment at F-serratus_M_contig8:911152..914578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19331.1 ID=mRNA_F-serratus_M_contig8.19331.1|Name=mRNA_F-serratus_M_contig8.19331.1|organism=Fucus serratus male|type=mRNA|length=3427bp|location=Sequence derived from alignment at F-serratus_M_contig8:911152..914578- (Fucus serratus male)
CCGACCGCAGCCTCTGGCGGGATTAGTTACCTGTGCTGGTGAGATGTTAC
TGGGACCAAGATTGCTCATAATACTCACCATTGCGTGGTGTTTGGAATAA
TTGCCTGCGTGTAAGCGCACACTCCTCCAGTAATAATGAAAGATTGGTAC
AAGTACGTCCCTAACATGCTTCCCGGCAGCGAGCGGGTGCCGTTGCTTAC
ACCGTCGTTCGGCCTAGCACCAGTTTTCCTGGCATCGAGGAGCGTGTCGG
GACCCATATGTAAATCAGCTTCATGCTTGCGGGGCAGAGACGTGGATGTT
TTGTGTTCGTCAACAGCCGGAGACGACAGACTGTCGGCTGCAGCTGCAGC
GAGAGCGCGTGTCCTTCAACAACAAAACATTATCGCTGATCGAAGAGTAA
AGCGATCGAAGGAGCAGAAGCAACGGCGGCAACAGCAGGAGTCCAGAACA
AAAGGGCATCGAGATTCTCTAGGGAATGGCCTGAAGGATGCGCTTTACTC
TCAGTCGCGAGCCATAGGGGACAAGATCAAACGCATGCGGACGAACGACT
GGGAGGGTGTGCTCCGCGAGCTGAAGCATGCGGAGCGCACGCTGGAGCTG
GAGGGTTTCAGGGTCACCTTGCGCATTTACGCCACCTCCATACGGCACCT
GGCGAAGTGCAGACGATGGAGAGAGGCCGTGGGTGTCCTTCATGGCATCC
GAGCTGCGGGTAGATCCCCAAACAGTGACTGCCTGAGCGCCGCCATCGAC
GCGTGCAGGTACGCGAGACAGTGGGAGCAGGCCGTGTCTCTGCTGCGGCA
AGAGCGAAAAATCGGGACTGGTGTGGACGCCTTCTGCTACAGCTCCGCGA
TAGCAGCTTGCGGGAACGCAGGCCAGTGGGAGCTGGCCGTTTCTTTGCTG
AGGGAGATGGAAGCTTCTGGCACTCCCCCAAACGTGGTGACCTTCAACTC
AGCCATCACAGCGTGCGGCAACGCGGGCCGGTGGCGAGAGGCCGTGTCCC
TCTTGCGGGAGATGGAGTCGCTGCAGATCAAACCCTCACCGATAAGCTTC
AACTCCGCAATTGCCGCTTGTCATGCAGGGCACTGGCAGGAGGCGTTGTC
TCTCATGAGGGAGATGGTTGCGAAGGGATATTCACCAGATGTGGTGACCT
ACAACTCGGCGATCACAGCATGCGGTGGGCGGTGGGAGGAGGCCGTTTCA
CTGCTGGGAGAAATGGAGGTCGAGGGCATTACCCCGGACGTAATATCGTA
CTCCGCAGCGATTAAGGCTTGCGGCAAGGGTGGTCAGCCGGAAGAAGCCG
TGTCTTTGCTTAGGGAGATGGTGACACGGGATATCCGCCCGAATGTGGTG
ACTTTCAATTCGGCGATCACGGCTGTTGGTGAAGCGGGCCAATGGGAGGA
GTCCGTTTCTCTTTTGCGGGAGATGGATGCCGAAGGTATCACGCCTGACG
TCATTTCATACTCGGCAGCCATCACGGCATGTGGCAACGGAGGCCAGCCG
AGCCGAGCTCTTGCGCTGTTACGAGAGATGGAAGCTCGAGGCATCTCTCC
AAATGTCATCTCTTATTCTGCATCCATTGCCGCATGCAGGAACGGAGGGT
GGCCGACAGAGGCCGTGTCATTGTTGAGAGAAATGGCGACGAAAGGCGTC
AGCCCGAACGAGACGACTTTTAACTCGGCCATTACGGCCGTTGGCGATAC
GGGACGGTGGCAGGAGGCGATGTCGCTATTCAGAGAGATGGAAACTTCGG
GTATTTCTCCATCCCAAATAAGCTTCAACTCTGCGATCGAGGCGTGCGCC
ATCGGCGGTCAATCTGGGCTGGCTGTGTCTCTATTGGAGGAGATGGCATC
GAAAGGAATTGCCCGAGACATTGTCAGCTACCATTTGACCATTAAAGCGC
ACGACGTATGTATCAACGACACGCCACCAAGCCTACGAAGCAATTGTTTG
GAGACAATGTCATTTTCGGGTCGCTGCAACGCATGAGGTGAGACCTTTTC
TCTTGAAGTTCCGATCAACTTTACTCCAGGTATAATATAATATGTAGTCC
AGACGGGCTAGGTGGCCACGAGCTTTGCCGAGTCTTTTATTTGCCTTGTA
GAATACCATCCGTTCTTGCCGGCTTGCGTTCTTAACGTCCTAGTTACCAT
GGCTCCTAAGAACCGGACTGAGCTGTCGCATCTTGTTGACTGGGGACTGT
CCGGAATGCTCGTGCGTGACTCGAATATACGTGGCCCAGGCTCGTTTTTC
TAGCGATTGCTCGGGTCGAGAGTAACCTTGACGTTGGAAATGTGTCCCGT
GTAATTTTGTCGAGTGTTCCACCGAAGCGAAGCTGAGGTAAGGCTGGCAG
CCGTGTCATCGCAGTAATAAATGTAATCTATAGTTCGTTTCGCGCAGCTG
AATTAACGTGGGATCCAAAATTTGAAGCAGCTGATCGCTTTTGACCCCTC
AAGCGGCCTTGATGATCTCTCCCACGAAGTAAGTTGTTCCTTAACGACCT
CCTTGCCGATTCCCGAAAACGCGCTCCCCTGCTCATATCGTTCCATTTTT
TCGTTGTTTGGGTTTCACTCTTGCCGTTTGAGTCAGTTTTCGAGCGTAAA
GAGTGCCCAACGGCCCTCGACAACTGTGGAAGGTGCCTGAGGGAGGATGG
AGTACCTCGTGTACCCCGGTACCGTTTTGGTGAAGAACGTACGCGACGCC
TTACCCCCTGAAGGACAGCGTAGGTTCTTAAGAGCAGCGGTGGGCAATCA
CCTGCGAGACCATCGTAAATTTGATAGATATTTCGTTACGCATCGAATCG
ACCCGAAAGATGACATCAATTATGTATTTGACGTGTATTGAAAGTAGAAT
CAACGGGTGCAGACTGTAATATTATAGTAGGATTGAAACGAAAAGACAGA
GCGTTTTCACACGAAAGCAAAGCGCCCCGTTTTCGCTTCTAACCGCTGCC
GCATGAATTTCTTTGTATAAATAGTTGGCCTGCTGCATGTGGTTTTGTCG
CGCATGTCAAGGGTCGGGTTGTCCGTCCTTGTGTATTGCTGTAAGTACGA
GAGGGGGAAAGTGGGACAAGTTTGCAAGCCTGAGTGATTTTTAACTAGCA
TCTCACGGTCTGGTTGCTATTAATATTGTGCCATAGTGCCGTAGTTCCCA
CCGTGTTTAGTTCCATCCCCCGCAGCCATCTCCGTCGCTCCCCCGAAAAT
TGGTAAGAGGTGGCCCGCTCGAGAGAGAAAAAATAAATCAGGCACCTTCC
ATCTGAACGCTGTTGATCGTCTCATGGTTCTTTTGTAATATATCGGTTCT
TCATCGGCCAGGTCGAGCCCCAACGCCCGCCTCTCGCCGTTGATTACACA
TCAAAGTTTAAGATAATGTATCCTTGTTTTTTCAAGTTGTGATCGGCGGT
ATTCTAGAGGCTGCAAAGACATTTATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:911152..914578-

>mRNA_F-serratus_M_contig8.19331.1 ID=mRNA_F-serratus_M_contig8.19331.1|Name=mRNA_F-serratus_M_contig8.19331.1|organism=Fucus serratus male|type=CDS|length=3702bp|location=Sequence derived from alignment at F-serratus_M_contig8:911152..914578- (Fucus serratus male)
ATGAAAGATTGGTACAAGTACGTCCCTAACATGCTTCCCGGCAGCGAGCG
GGTGCCGTTGCTTACACCGTCGTTCGGCCTAGCACCAGTTTTCCTGGCAT
CGAGGAGCGTGTCGGGACCCATATGTAAATCAGCTTCATGCTTGCGGGGC
AGAGACGTGGATGTTTTGTGTTCGTCAACAGCCGGAGACGACAGACTGTC
GGCTGCAGCTGCAGCGAGAGCGCGTGTCCTTCAACAACAAAACATTATCG
CTGATCGAAGAGTAAAGCGATCGAAGGAGCAGAAGCAACGGCGGCAACAG
CAGGAGTCCAGAACAAAAGGGCATCGAGATTCTCTAGGGAATGGCCTGAA
GGATGCGCTTTACTCTCAGTCGCGAGCCATAGGGGACAAGATCAAACGCA
TGCGGACGAACGACTGGGAGGGTGTGCTCCGCGAGCTGAAGCATGCGGAG
CGCACGCTGGAGCTGGAGGGTTTCAGGGTCACCTTGCGCATTTACGCCAC
CTCCATACGGCACCTGGCGAAGTGCAGACGATGGAGAGAGGCCGTGGGTG
TCCTTCATGGCATCCGAGCTGCGGGTAGATCCCCAAACAGTGACTGCCTG
AGCGCCGCCATCGACGCGTGCAGGTACGCGAGACAGTGGGAGCAGGCCGT
GTCTCTGCTGCGGCAAGAGCGAAAAATCGGGACTGGTGTGGACGCCTTCT
GCTACAGCTCCGCGATAGCAGCTTGCGGGAACGCAGGCCAGTGGGAGCTG
GCCGTTTCTTTGCTGAGGGAGATGGAAGCTTCTGGCACTCCCCCAAACGT
GGTGACCTTCAACTCAGCCATCACAGCGTGCGGCAACGCGGGCCGGTGGC
GAGAGGCCGTGTCCCTCTTGCGGGAGATGGAGTCGCTGCAGATCAAACCC
TCACCGATAAGCTTCAACTCCGCAATTGCCGCTTGTCATGCAGGGCACTG
GCAGGAGGCGTTGTCTCTCATGAGGGAGATGGTTGCGAAGGGATATTCAC
CAGATGTGGTGACCTACAACTCGGCGATCACAGCATGCGGTGGGCGGTGG
GAGGAGGCCGTTTCACTGCTGGGAGAAATGGAGGTCGAGGGCATTACCCC
GGACGTAATATCGTACTCCGCAGCGATTAAGGCTTGCGGCAAGGGTGGTC
AGCCGGAAGAAGCCGTGTCTTTGCTTAGGGAGATGGTGACACGGGATATC
CGCCCGAATGTGGTGACTTTCAATTCGGCGATCACGGCTGTTGGTGAAGC
GGGCCAATGGGAGGAGTCCGTTTCTCTTTTGCGGGAGATGGATGCCGAAG
GTATCACGCCTGACGTCATTTCATACTCGGCAGCCATCACGGCATGTGGC
AACGGAGGCCAGCCGAGCCGAGCTCTTGCGCTGTTACGAGAGATGGAAGC
TCGAGGCATCTCTCCAAATGTCATCTCTTATTCTGCATCCATTGCCGCAT
GCAGGAACGGAGGGTGGCCGACAGAGGCCGTGTCATTGTTGAGAGAAATG
GCGACGAAAGGCGTCAGCCCGAACGAGACGACTTTTAACTCGGCCATTAC
GGCCGTTGGCGATACGGGACGGTGGCAGGAGGCGATGTCGCTATTCAGAG
AGATGGAAACTTCGGGTATTTCTCCATCCCAAATAAGCTTCAACTCTGCG
ATCGAGGCGTGCGCCATCGGCGGTCAATCTGGGCTGGCTGTGTCTCTATT
GGAGGAGATGGCATCGAAAGGAATTGCCCGAGACATTGTCAGCTACCATT
TGACCATTAAAGCGCACGACGTATGTATCAACGACACGCCACCAAGCCTA
CGAAGCAATTGTTTGGAGACAATGTCATTTTCGGGTCGCTGCAACGCATG
AATGAAAGATTGGTACAAGTACGTCCCTAACATGCTTCCCGGCAGCGAGC
GGGTGCCGTTGCTTACACCGTCGTTCGGCCTAGCACCAGTTTTCCTGGCA
TCGAGGAGCGTGTCGGGACCCATATGTAAATCAGCTTCATGCTTGCGGGG
CAGAGACGTGGATGTTTTGTGTTCGTCAACAGCCGGAGACGACAGACTGT
CGGCTGCAGCTGCAGCGAGAGCGCGTGTCCTTCAACAACAAAACATTATC
GCTGATCGAAGAGTAAAGCGATCGAAGGAGCAGAAGCAACGGCGGCAACA
GCAGGAGTCCAGAACAAAAGGGCATCGAGATTCTCTAGGGAATGGCCTGA
AGGATGCGCTTTACTCTCAGTCGCGAGCCATAGGGGACAAGATCAAACGC
ATGCGGACGAACGACTGGGAGGGTGTGCTCCGCGAGCTGAAGCATGCGGA
GCGCACGCTGGAGCTGGAGGGTTTCAGGGTCACCTTGCGCATTTACGCCA
CCTCCATACGGCACCTGGCGAAGTGCAGACGATGGAGAGAGGCCGTGGGT
GTCCTTCATGGCATCCGAGCTGCGGGTAGATCCCCAAACAGTGACTGCCT
GAGCGCCGCCATCGACGCGTGCAGGTACGCGAGACAGTGGGAGCAGGCCG
TGTCTCTGCTGCGGCAAGAGCGAAAAATCGGGACTGGTGTGGACGCCTTC
TGCTACAGCTCCGCGATAGCAGCTTGCGGGAACGCAGGCCAGTGGGAGCT
GGCCGTTTCTTTGCTGAGGGAGATGGAAGCTTCTGGCACTCCCCCAAACG
TGGTGACCTTCAACTCAGCCATCACAGCGTGCGGCAACGCGGGCCGGTGG
CGAGAGGCCGTGTCCCTCTTGCGGGAGATGGAGTCGCTGCAGATCAAACC
CTCACCGATAAGCTTCAACTCCGCAATTGCCGCTTGTCATGCAGGGCACT
GGCAGGAGGCGTTGTCTCTCATGAGGGAGATGGTTGCGAAGGGATATTCA
CCAGATGTGGTGACCTACAACTCGGCGATCACAGCATGCGGTGGGCGGTG
GGAGGAGGCCGTTTCACTGCTGGGAGAAATGGAGGTCGAGGGCATTACCC
CGGACGTAATATCGTACTCCGCAGCGATTAAGGCTTGCGGCAAGGGTGGT
CAGCCGGAAGAAGCCGTGTCTTTGCTTAGGGAGATGGTGACACGGGATAT
CCGCCCGAATGTGGTGACTTTCAATTCGGCGATCACGGCTGTTGGTGAAG
CGGGCCAATGGGAGGAGTCCGTTTCTCTTTTGCGGGAGATGGATGCCGAA
GGTATCACGCCTGACGTCATTTCATACTCGGCAGCCATCACGGCATGTGG
CAACGGAGGCCAGCCGAGCCGAGCTCTTGCGCTGTTACGAGAGATGGAAG
CTCGAGGCATCTCTCCAAATGTCATCTCTTATTCTGCATCCATTGCCGCA
TGCAGGAACGGAGGGTGGCCGACAGAGGCCGTGTCATTGTTGAGAGAAAT
GGCGACGAAAGGCGTCAGCCCGAACGAGACGACTTTTAACTCGGCCATTA
CGGCCGTTGGCGATACGGGACGGTGGCAGGAGGCGATGTCGCTATTCAGA
GAGATGGAAACTTCGGGTATTTCTCCATCCCAAATAAGCTTCAACTCTGC
GATCGAGGCGTGCGCCATCGGCGGTCAATCTGGGCTGGCTGTGTCTCTAT
TGGAGGAGATGGCATCGAAAGGAATTGCCCGAGACATTGTCAGCTACCAT
TTGACCATTAAAGCGCACGACGTATGTATCAACGACACGCCACCAAGCCT
ACGAAGCAATTGTTTGGAGACAATGTCATTTTCGGGTCGCTGCAACGCAT
GA
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