mRNA_F-serratus_M_contig8.19323.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19323.1
Unique NamemRNA_F-serratus_M_contig8.19323.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:827207..831218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1694
Cds size1692
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19323.1prot_F-serratus_M_contig8.19323.1Fucus serratus malepolypeptideF-serratus_M_contig8 827209..831218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932369.5536356-CDS-F-serratus_M_contig8:827208..8273941622932369.5536356-CDS-F-serratus_M_contig8:827208..827394Fucus serratus maleCDSF-serratus_M_contig8 827209..827394 -
1690964275.0162387-CDS-F-serratus_M_contig8:827208..8273941690964275.0162387-CDS-F-serratus_M_contig8:827208..827394Fucus serratus maleCDSF-serratus_M_contig8 827209..827394 -
1622932369.5723207-CDS-F-serratus_M_contig8:827702..8287851622932369.5723207-CDS-F-serratus_M_contig8:827702..828785Fucus serratus maleCDSF-serratus_M_contig8 827703..828785 -
1690964275.0294745-CDS-F-serratus_M_contig8:827702..8287851690964275.0294745-CDS-F-serratus_M_contig8:827702..828785Fucus serratus maleCDSF-serratus_M_contig8 827703..828785 -
1622932369.5871506-CDS-F-serratus_M_contig8:830795..8312181622932369.5871506-CDS-F-serratus_M_contig8:830795..831218Fucus serratus maleCDSF-serratus_M_contig8 830796..831218 -
1690964275.04236-CDS-F-serratus_M_contig8:830795..8312181690964275.04236-CDS-F-serratus_M_contig8:830795..831218Fucus serratus maleCDSF-serratus_M_contig8 830796..831218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19323.1

>prot_F-serratus_M_contig8.19323.1 ID=prot_F-serratus_M_contig8.19323.1|Name=mRNA_F-serratus_M_contig8.19323.1|organism=Fucus serratus male|type=polypeptide|length=564bp
GGSAATREPRVFDDRFPSPPGDPSRGGRSSSSGSSSGGVFYVASDLDSST
GRGREHEQDAWVRNQTIQTAQRDLLERQRQRQQQRDLMALESGQVYPGTL
PDQIGGGISSMMVDQQPQSAYTLQLRQQQQQRMRLRHLHQQQQQHQRQLR
QGFGHQLPLADPVQHIQQQQTRNHLLGDDINSITGADSVSTAAANSKGGG
MSNAFSTTGAFSSSAITGRPTLPFPSTPASPRNPPRQTQRHDQQLYRHNY
LHRQQQQQQQGLGLGLGLEVGLGLESQRGVNSSSNHAPRVSLLSHQQPQQ
QQQEQQPFGGVVSGSALGIFEQQVGSVSGGSGRGADEGRGPTPSQGLGNL
GPLDGLGFDPGRTMAMFGQAGNGEDFGSSLDDSPHEALDPLAGQLLTGLS
GVSVGQRQQQLSISGHRSAADFGSGLSSLNHRASAVGHGTGTVGVLGAGL
GNFGDGVNHAQGVSMMRQAQLTQLRGLVGSPQRQQQQPEAAGLFYQRQQH
QQVQPNPFDFQFQPAAFQGHFEQAHAGRNPTSTGISRAAATAAVAAVAPF
GGSSSSNSGSDVNG
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mRNA from alignment at F-serratus_M_contig8:827207..831218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19323.1 ID=mRNA_F-serratus_M_contig8.19323.1|Name=mRNA_F-serratus_M_contig8.19323.1|organism=Fucus serratus male|type=mRNA|length=4012bp|location=Sequence derived from alignment at F-serratus_M_contig8:827207..831218- (Fucus serratus male)
GGGGGCAGTGCCGCTACGAGAGAGCCACGCGTCTTTGATGATCGTTTTCC
GTCTCCACCTGGAGATCCTAGTCGCGGCGGAAGGAGTAGCAGCAGTGGCA
GCAGCAGCGGCGGTGTTTTTTATGTCGCGAGCGACCTCGACAGCAGCACT
GGTCGTGGTCGTGAGCACGAGCAAGACGCCTGGGTGCGAAATCAGACCAT
CCAGACCGCGCAGCGCGACTTGTTGGAACGGCAGAGGCAGCGACAGCAAC
AACGAGACCTAATGGCGCTGGAGTCTGGGCAGGTATACCCAGGCACGCTG
CCCGACCAGATAGGCGGTGGGATTTCTTCGATGATGGTCGACCAGCAACC
ACAGTCGGCTTATACCCTCCAGCTTCGGCAGCAGCAGCAGCAGCGGATGA
GGCTTCGACATCTTCATCAGCAGGTACGATGCTCAAACGTAACCTCCCCT
CCATATTGTTCTGATTCGTCACAATATGGCGAACGGCGGAATGAACAGAT
AGTAGCACTATCTTGATGGCTCATCATAAAGCACGTGCCTGTGGAACTCA
AATGGCCCACATGAATCGAATCGAGCAGTTGCTGTCAACGTGCTGCGCTT
TTTGGGGAAAACTGGCTTCGACTGTTCGCACAGAGTCCAGAGAAAATTGT
TAACGAATAGTCTACGCCCACATTGGCGGAATTCCTTCGGACTTGCATTT
GTCGTTGATTTTTGCTCCGACTTGTGGAGGAGTAAAGTTGAGGCTGCCGT
ATCCTTATTTTGAAATTTTATCCAAGAGTTGAATGTTTTTGGAGCTGTTC
CTGTTCGCAAAAAAAAATGACCAAGGGCAGAATTCATTGTATTTCCACGA
CTTCCCGGAGCACTTTTATTTTATGCACGGGCACTCATTGGTCGAACTGA
CGGAGCGTGATAACAGTGCTGTTGATATCATGGTACGTTATGTAGTACTG
CATTCATGGTACATAGTATCTACCAGTACCGCTGTAGTCACATATATATA
TATTCATATACAAGAGTGAACCGTGCAAAAATGTACGTGTACCTAAATAA
AAAATAGATATATGTAAACAAAATGCAAACAGCAGTACATATGTCCTTAA
CACGATTGCATCTGCAAGGACACTTCATGTCCCTGTTCAGCTGGAAGGTT
TGGCAACCTTACGCGGTTGATCCATACTCTGCTGTAAGTAAGTGGTGGCC
GTTAATACTAAACATGTATACATATCACCAGCAGTAGTAGCCATATGTTA
AACCAATAAACAAAGCTGAATATCAGGTGTCTGTATAGTATAGTATTTTC
CATTGTTTTTTCTTGTATGGGTGTGTTTCGCCTCACCAGACTAGTTATTA
GGTCGATTTTGTGACGATTTGTACAGAATATCGAGTGTTATATCTCCCGG
CGGATATTCACAACCAAAGAGCGCAGACTTTTGATGGCGCAGCGCACTAG
ACGACCTACAGAAGCGTTAAACGCTCAGGTATCTTTGTGTGCTGACCGTA
ATTGGTTCGCGAGTGTGTGCATCAAGCACGGTGTCTTCCAGTCGAGGCGT
TCAAAGAGGATAACTGTTGCGCCGCACAGGCTTCCAACTAGAGCAAAAAA
GATTATTTTTCCATCGTAACTCGGTTTCGTATGCTAATTTCAGCGGCCGT
CTATTTACACCTAGGATGCTGCTTGGAGTTTCGTGAGCTCGGGGGTTTTG
TGCGGCGTGAATGGAATGTATGTGGTCGATTGAGACTGAGTTTGGTTCAC
ATCCAGACCACAAACGCCCTCGGCCGCCGTCCTCGACAGTCCTCGACGCG
CACTCAACCGTTTCGGCCGGAGCGCGTAGTGGAGGCGTCCATGTGGGCTG
GGGTACACAATGTACAAGAGTTTGATCGTCTAACTTGAGCGCTCAGCTCC
GGAGAACGCAAACCTGAAATACAGAGTTTCGATCGGTGCCTGCCAATGTA
GCGGACCCCAAATAATCGCACGATTCGGCGCAAATACGAGTGGCGACGAT
TGCATTCCACACGTGTCACGAAAAGACACGAAATCTTCCAGGTAGCCCAT
GTCTCTCAACGGCGAACATTTTCATTCCTTGCGGGTCAGCCATCTCTTTT
CAGGGCTGACCTCAATTTCTGCCATCCCTGTCATAAGTGTTACAGCCCTT
GATAAAAGCTGCAAAGGGTCCAAATGGCGCCCATTTCATTGAAGCGGATA
TTCAACCGCATTTTATTTTATTGTTGTAACCCGTCACTATTTTGGAGTAA
AAAAGCAAAAAACGGGGATCGGGGAACAATCGCGCATAGTGCAGCCAGCC
TTAAAGGTTATACCGCAACGCCAAAACACCGTCAAAACCCCCCAAAGAAA
ACAACGAATAGAGCTTGTGTGTCTCAAATATTGTCTTCATGCTTTTACAT
CCGCTTCGTTCCCATCGATGTCCATCCCAGCAGCAGCAGCAGCACCAACG
ACAACTTCGACAAGGCTTCGGTCACCAGCTTCCCCTCGCAGATCCTGTAC
AACACATCCAGCAGCAGCAGACAAGGAATCATCTACTTGGTGATGATATC
AACAGCATTACTGGGGCAGACAGTGTCAGCACAGCTGCTGCGAACAGCAA
AGGCGGCGGCATGTCGAACGCCTTCTCGACCACGGGAGCGTTCAGTAGCT
CCGCCATTACAGGCCGCCCTACCCTCCCTTTCCCCAGCACGCCCGCCTCG
CCTAGAAACCCACCCCGTCAAACTCAACGCCACGACCAACAGCTTTACCG
TCACAACTATCTACATCGGCAGCAGCAACAGCAGCAGCAGGGGTTAGGTT
TAGGTCTAGGGTTAGAAGTAGGGCTAGGGCTCGAATCACAGCGCGGAGTG
AACAGCAGCAGCAACCATGCCCCGAGGGTGTCCTTGTTGTCCCACCAGCA
ACCGCAGCAGCAGCAGCAGGAGCAGCAGCCGTTTGGCGGCGTTGTGAGCG
GTTCTGCGCTCGGAATATTCGAGCAGCAAGTAGGAAGCGTCAGCGGGGGT
TCAGGGAGGGGTGCGGACGAAGGGAGAGGACCCACGCCATCCCAAGGCCT
AGGAAACCTTGGACCTCTCGACGGTTTGGGCTTCGACCCGGGGCGGACAA
TGGCAATGTTTGGGCAGGCTGGGAACGGTGAAGACTTCGGTTCGAGCCTG
GACGACTCACCACATGAAGCACTTGATCCACTCGCCGGACAGCTACTAAC
AGGCTTATCAGGGGTCAGCGTGGGCCAAAGACAGCAGCAGTTGAGCATCT
CGGGGCATAGAAGTGCGGCTGATTTTGGATCAGGATTGAGCTCCTTGAAT
CACCGAGCTAGCGCCGTAGGGCATGGTACCGGTACGGTGGGTGTTTTGGG
CGCCGGGCTGGGGAACTTTGGTGATGGAGTGAATCACGCGCAAGGAGTGT
CGATGATGAGGCAGGCTCAGCTGACGCAGTTGCGCGGTCTGGTAGGATCC
CCTCAGAGGCAGCAACAGCAGCCTGAAGCGGCGGGGCTTTTCTACCAGCG
GCAGCAGCACCAACAAGTGAGCAGGCAGGGAGTGCATTCTAGCGCGCAAT
AGTCACACGAATCAGATCGCGTCACCACAACCTTGCCGCACGAGATGAAA
TTGTGACACTGTATGCGTCGTTGATGCTTGGAATGGCTAAGTTCCCCCTC
CTATTTTTCCCAGAGTTGTCGTGAACCCTGCCCCCCCCCCCCCTTTATCC
ATAAAACTTGCTCACAATATTTATCCCTTCTTCGCCGCGCCCGTATGGAA
ACGTTTTATGTATCGCCGATGATGGTGGCGGGGGCGGGGGGCGGTTATGT
AAACACATCCGCTCCCGGAAGAAGGTTCAGCCGAATCCTTTCGATTTCCA
GTTCCAGCCCGCTGCCTTCCAGGGGCACTTCGAGCAGGCCCACGCGGGGA
GGAACCCCACCAGTACCGGCATTAGTAGAGCAGCGGCAACAGCGGCGGTA
GCGGCAGTGGCACCGTTCGGAGGCAGCTCTAGTAGCAATAGTGGTAGTGA
TGTCAATGGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:827207..831218-

>mRNA_F-serratus_M_contig8.19323.1 ID=mRNA_F-serratus_M_contig8.19323.1|Name=mRNA_F-serratus_M_contig8.19323.1|organism=Fucus serratus male|type=CDS|length=3384bp|location=Sequence derived from alignment at F-serratus_M_contig8:827207..831218- (Fucus serratus male)
GGGGGCAGTGCCGCTACGAGAGAGCCACGCGTCTTTGATGATCGTTTTCC
GTCTCCACCTGGAGATCCTAGTCGCGGCGGAAGGAGTAGCAGCAGTGGCA
GCAGCAGCGGCGGTGTTTTTTATGTCGCGAGCGACCTCGACAGCAGCACT
GGTCGTGGTCGTGAGCACGAGCAAGACGCCTGGGTGCGAAATCAGACCAT
CCAGACCGCGCAGCGCGACTTGTTGGAACGGCAGAGGCAGCGACAGCAAC
AACGAGACCTAATGGCGCTGGAGTCTGGGCAGGTATACCCAGGCACGCTG
CCCGACCAGATAGGCGGTGGGATTTCTTCGATGATGGTCGACCAGCAACC
ACAGTCGGCTTATACCCTCCAGCTTCGGCAGCAGCAGCAGCAGCGGATGA
GGCTTCGACATCTTCATCAGCAGGGGGGCAGTGCCGCTACGAGAGAGCCA
CGCGTCTTTGATGATCGTTTTCCGTCTCCACCTGGAGATCCTAGTCGCGG
CGGAAGGAGTAGCAGCAGTGGCAGCAGCAGCGGCGGTGTTTTTTATGTCG
CGAGCGACCTCGACAGCAGCACTGGTCGTGGTCGTGAGCACGAGCAAGAC
GCCTGGGTGCGAAATCAGACCATCCAGACCGCGCAGCGCGACTTGTTGGA
ACGGCAGAGGCAGCGACAGCAACAACGAGACCTAATGGCGCTGGAGTCTG
GGCAGGTATACCCAGGCACGCTGCCCGACCAGATAGGCGGTGGGATTTCT
TCGATGATGGTCGACCAGCAACCACAGTCGGCTTATACCCTCCAGCTTCG
GCAGCAGCAGCAGCAGCGGATGAGGCTTCGACATCTTCATCAGCAGCAGC
AGCAGCACCAACGACAACTTCGACAAGGCTTCGGTCACCAGCTTCCCCTC
GCAGATCCTGTACAACACATCCAGCAGCAGCAGACAAGGAATCATCTACT
TGGTGATGATATCAACAGCATTACTGGGGCAGACAGTGTCAGCACAGCTG
CTGCGAACAGCAAAGGCGGCGGCATGTCGAACGCCTTCTCGACCACGGGA
GCGTTCAGTAGCTCCGCCATTACAGGCCGCCCTACCCTCCCTTTCCCCAG
CACGCCCGCCTCGCCTAGAAACCCACCCCGTCAAACTCAACGCCACGACC
AACAGCTTTACCGTCACAACTATCTACATCGGCAGCAGCAACAGCAGCAG
CAGGGGTTAGGTTTAGGTCTAGGGTTAGAAGTAGGGCTAGGGCTCGAATC
ACAGCGCGGAGTGAACAGCAGCAGCAACCATGCCCCGAGGGTGTCCTTGT
TGTCCCACCAGCAACCGCAGCAGCAGCAGCAGGAGCAGCAGCCGTTTGGC
GGCGTTGTGAGCGGTTCTGCGCTCGGAATATTCGAGCAGCAAGTAGGAAG
CGTCAGCGGGGGTTCAGGGAGGGGTGCGGACGAAGGGAGAGGACCCACGC
CATCCCAAGGCCTAGGAAACCTTGGACCTCTCGACGGTTTGGGCTTCGAC
CCGGGGCGGACAATGGCAATGTTTGGGCAGGCTGGGAACGGTGAAGACTT
CGGTTCGAGCCTGGACGACTCACCACATGAAGCACTTGATCCACTCGCCG
GACAGCTACTAACAGGCTTATCAGGGGTCAGCGTGGGCCAAAGACAGCAG
CAGTTGAGCATCTCGGGGCATAGAAGTGCGGCTGATTTTGGATCAGGATT
GAGCTCCTTGAATCACCGAGCTAGCGCCGTAGGGCATGGTACCGGTACGG
TGGGTGTTTTGGGCGCCGGGCTGGGGAACTTTGGTGATGGAGTGAATCAC
GCGCAAGGAGTGTCGATGATGAGGCAGGCTCAGCTGACGCAGTTGCGCGG
TCTGGTAGGATCCCCTCAGAGGCAGCAACAGCAGCCTGAAGCGGCGGGGC
TTTTCTACCAGCGGCAGCAGCACCAACAACAGCAGCAGCACCAACGACAA
CTTCGACAAGGCTTCGGTCACCAGCTTCCCCTCGCAGATCCTGTACAACA
CATCCAGCAGCAGCAGACAAGGAATCATCTACTTGGTGATGATATCAACA
GCATTACTGGGGCAGACAGTGTCAGCACAGCTGCTGCGAACAGCAAAGGC
GGCGGCATGTCGAACGCCTTCTCGACCACGGGAGCGTTCAGTAGCTCCGC
CATTACAGGCCGCCCTACCCTCCCTTTCCCCAGCACGCCCGCCTCGCCTA
GAAACCCACCCCGTCAAACTCAACGCCACGACCAACAGCTTTACCGTCAC
AACTATCTACATCGGCAGCAGCAACAGCAGCAGCAGGGGTTAGGTTTAGG
TCTAGGGTTAGAAGTAGGGCTAGGGCTCGAATCACAGCGCGGAGTGAACA
GCAGCAGCAACCATGCCCCGAGGGTGTCCTTGTTGTCCCACCAGCAACCG
CAGCAGCAGCAGCAGGAGCAGCAGCCGTTTGGCGGCGTTGTGAGCGGTTC
TGCGCTCGGAATATTCGAGCAGCAAGTAGGAAGCGTCAGCGGGGGTTCAG
GGAGGGGTGCGGACGAAGGGAGAGGACCCACGCCATCCCAAGGCCTAGGA
AACCTTGGACCTCTCGACGGTTTGGGCTTCGACCCGGGGCGGACAATGGC
AATGTTTGGGCAGGCTGGGAACGGTGAAGACTTCGGTTCGAGCCTGGACG
ACTCACCACATGAAGCACTTGATCCACTCGCCGGACAGCTACTAACAGGC
TTATCAGGGGTCAGCGTGGGCCAAAGACAGCAGCAGTTGAGCATCTCGGG
GCATAGAAGTGCGGCTGATTTTGGATCAGGATTGAGCTCCTTGAATCACC
GAGCTAGCGCCGTAGGGCATGGTACCGGTACGGTGGGTGTTTTGGGCGCC
GGGCTGGGGAACTTTGGTGATGGAGTGAATCACGCGCAAGGAGTGTCGAT
GATGAGGCAGGCTCAGCTGACGCAGTTGCGCGGTCTGGTAGGATCCCCTC
AGAGGCAGCAACAGCAGCCTGAAGCGGCGGGGCTTTTCTACCAGCGGCAG
CAGCACCAACAAGTTCAGCCGAATCCTTTCGATTTCCAGTTCCAGCCCGC
TGCCTTCCAGGGGCACTTCGAGCAGGCCCACGCGGGGAGGAACCCCACCA
GTACCGGCATTAGTAGAGCAGCGGCAACAGCGGCGGTAGCGGCAGTGGCA
CCGTTCGGAGGCAGCTCTAGTAGCAATAGTGGTAGTGATGTCAATGGCGT
TCAGCCGAATCCTTTCGATTTCCAGTTCCAGCCCGCTGCCTTCCAGGGGC
ACTTCGAGCAGGCCCACGCGGGGAGGAACCCCACCAGTACCGGCATTAGT
AGAGCAGCGGCAACAGCGGCGGTAGCGGCAGTGGCACCGTTCGGAGGCAG
CTCTAGTAGCAATAGTGGTAGTGATGTCAATGGC
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