mRNA_F-serratus_M_contig8.19319.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19319.1
Unique NamemRNA_F-serratus_M_contig8.19319.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:804347..806608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000180.1
Exons4
Model size708
Cds size708
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19319.1prot_F-serratus_M_contig8.19319.1Fucus serratus malepolypeptideF-serratus_M_contig8 804347..806608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932369.447062-CDS-F-serratus_M_contig8:804346..8043791622932369.447062-CDS-F-serratus_M_contig8:804346..804379Fucus serratus maleCDSF-serratus_M_contig8 804347..804379 +
1690964274.958156-CDS-F-serratus_M_contig8:804346..8043791690964274.958156-CDS-F-serratus_M_contig8:804346..804379Fucus serratus maleCDSF-serratus_M_contig8 804347..804379 +
1622932369.4685473-CDS-F-serratus_M_contig8:805213..8053071622932369.4685473-CDS-F-serratus_M_contig8:805213..805307Fucus serratus maleCDSF-serratus_M_contig8 805214..805307 +
1690964274.9721568-CDS-F-serratus_M_contig8:805213..8053071690964274.9721568-CDS-F-serratus_M_contig8:805213..805307Fucus serratus maleCDSF-serratus_M_contig8 805214..805307 +
1622932369.4861948-CDS-F-serratus_M_contig8:805449..8057081622932369.4861948-CDS-F-serratus_M_contig8:805449..805708Fucus serratus maleCDSF-serratus_M_contig8 805450..805708 +
1690964274.989177-CDS-F-serratus_M_contig8:805449..8057081690964274.989177-CDS-F-serratus_M_contig8:805449..805708Fucus serratus maleCDSF-serratus_M_contig8 805450..805708 +
1622932369.5032206-CDS-F-serratus_M_contig8:806286..8066081622932369.5032206-CDS-F-serratus_M_contig8:806286..806608Fucus serratus maleCDSF-serratus_M_contig8 806287..806608 +
1690964275.0042136-CDS-F-serratus_M_contig8:806286..8066081690964275.0042136-CDS-F-serratus_M_contig8:806286..806608Fucus serratus maleCDSF-serratus_M_contig8 806287..806608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19319.1

>prot_F-serratus_M_contig8.19319.1 ID=prot_F-serratus_M_contig8.19319.1|Name=mRNA_F-serratus_M_contig8.19319.1|organism=Fucus serratus male|type=polypeptide|length=236bp
EDVWDDGAILKAFDDALSTHSRKPGAEVRCHGTRRWYLDIRWVVHVNERN
LMPSNVPRVRRLESGRNTPCRQRVGRHHRVGLPPIRWGQLMESKVFTRPK
AVFHRCWPKETGRWQRQDVQRVSRGHGNRHQDHGKELLSPHNRVRQWLSE
AGTTMAGPGATTIFTPEEQRSTAHITTRTSTDRKYRWVPLTGRGLVLKRD
GNATDFPLPQYLRCRTQGSAPTLPLIRYAQRWAAW*
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mRNA from alignment at F-serratus_M_contig8:804347..806608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19319.1 ID=mRNA_F-serratus_M_contig8.19319.1|Name=mRNA_F-serratus_M_contig8.19319.1|organism=Fucus serratus male|type=mRNA|length=2262bp|location=Sequence derived from alignment at F-serratus_M_contig8:804347..806608+ (Fucus serratus male)
GAGGATGTTTGGGACGACGGCGCGATTCTAAAGGTTAGCGATCACAGCAG
CAGTGACTTCAGACAGCTGCTCGATGCAGATTCGACAATCGTTGGACGCT
CGAAACCTTTAAACCTTACGGAGTGTTCTGTTGAATCTAAATCCATTCTA
GAGCTCTAGAGCTGCTCGTAGCTGCCAAGAAAGGCTCTTCGGGGCACTGC
CAGTTGTTGAAGATAGATAGCCATGTCGTGGAACATATGTTGCCTACAGT
GTCAAAACGCGGTGGGCACGGATGTCGGTATACTTGTCTGGCGTCGTCGA
GTGTATTGCCACCCTACCTGACACTCCGTCGTTCGAGCACACGCCCGATG
AGTTGTGGAACCCACGACACAACCGTATGCCGCAGGGGGTCGCTTTTCAG
ATTATTCACAAGTATGTATGGCCACACATATAGCAGAGAGTGTATGGATC
TACCGGGTATGGTTGCAAATCCTGCTCGTGGTCAGCTAAACAGGGAAAAT
TACTACTTCAGTATAAAATACCAGGTAGTCTGTAGTATTATGTACAGTCC
CAATTATTACAGATTTCATAAGCGAATGATGGCAAGTCCATCGATCAGAA
GTGTTTCTATTAAATAGTACCAGTACAACAGTACTGGTACAAGGACAGAA
CCGCTCGCTTTTTTATTGCGAAAGGGCAAACGTTGTTCGCTCTTGAAGTG
GAGGTCTCGCTACGAACGTGAGGAATTTTGACATTCGAGGGTGGTGACGA
AGCCACCCAGACGCGACCACCTTGCATTCCAAAACACATTTTTTAGGACC
GTGACTGCACGACCCTCGCTGTTGTATCTAACCCGCAGTCTCGAACTCAC
GATCTCTACCTCGGCAGGCCTTCGACGACGCCTTGAGTACACATAGTCGG
AAGCCCGGAGCAGAGGTGCGTTGTCATGGAACAAGGCGATGGTACCTGGA
TATACGATGGGGTATTGCCTAGGCATCAGCAACAACGACATGCCTCGGTA
GCGCTCCCCCAGCTTGTACGAGAATACCCAGCGTAAGAGGCTCAAAACAT
GAATGAGATGTCTAATATTTTTGTGCATTTGACCTCTTCGCCTCTATTCT
TAGTCGTGCACGTCAACGAGCGAAATCTGATGCCTTCCAATGTCCCGAGA
GTACGCAGGCTCGAAAGTGGAAGAAACACGCCGTGCAGGCAGCGGGTGGG
CAGGCATCATCGCGTGGGGCTTCCCCCTATCCGGTGGGGACAGCTGATGG
AGTCCAAGGTTTTCACCAGACCGAAAGCCGTTTTTCATCGCTGCTGGCCA
AAGGAAACGGGGAGGTGGCAGCGTCAAGACGTGCAGCGGGTGTCCCGGGG
CCATGGGAACCGGTGGCCCGAGAGGTAAGGGGACTGATTTGGTTCTTCTA
CCTTGGTAATGTCCATAACTACTCTCGATACGTAAAACACCCCTGGTTTT
CGCGTGGCCATGTGCCTTGTTAATCTTATTAGCTGTTGAGATATAATTTG
TTCGTTCACAAGGGTTAGGTTTTCCTTGGTCCAAGTTGCGCAACTGATCC
AGCAGTTCAGGCACATCCGTTGCATCTTGATTGCTTGGCCCTAATGTCTT
CGTCTTCTCGCGGTGCTCCCTCGGCAGGGTGAGGGATCGCACAGGGGGGT
TCTGCCACACGAAGCTGGGCAGCGGTAAGTATCGTACCCTCGCGACTTGA
CAGGCGATTGTCCGTATTTTCGGGAACATGCATGGGGGGCGAGGCAGAAT
GCGCCTTTGTACACGTCGCCGCATACTGTACCACGAGGTTGTGGTCTGAG
TTGGAACGTGTTTTATTTGTCAAGGTGAGACCCACTATATATTGCGACGA
CCGGGAGCTCGAAGGTCCAAAGATGCAGGCAAAGCACTCGGCCACCCTCT
TCAATACATTGCGTTAAGAAACAACCGCCACGGTTATGAGCCATCAAGAC
CACGGAAAAGAACTGTTGTCTCCGCACAATCGGGTACGACAATGGCTCTC
GGAAGCAGGTACGACAATGGCCGGACCGGGAGCCACGACAATTTTTACTC
CAGAGGAGCAGAGGAGTACGGCGCACATCACAACCCGTACCTCAACGGAT
CGCAAATACCGCTGGGTGCCTCTAACGGGGCGGGGGCTGGTTTTGAAGAG
GGATGGGAACGCCACGGACTTCCCCCTCCCCCAATACCTCCGATGCCGCA
CGCAGGGTTCGGCCCCCACGCTGCCGCTCATCAGGTATGCGCAACGATGG
GCTGCGTGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:804347..806608+

>mRNA_F-serratus_M_contig8.19319.1 ID=mRNA_F-serratus_M_contig8.19319.1|Name=mRNA_F-serratus_M_contig8.19319.1|organism=Fucus serratus male|type=CDS|length=1416bp|location=Sequence derived from alignment at F-serratus_M_contig8:804347..806608+ (Fucus serratus male)
GAGGATGTTTGGGACGACGGCGCGATTCTAAAGGAGGATGTTTGGGACGA
CGGCGCGATTCTAAAGGCCTTCGACGACGCCTTGAGTACACATAGTCGGA
AGCCCGGAGCAGAGGTGCGTTGTCATGGAACAAGGCGATGGTACCTGGAT
ATACGATGGGGCCTTCGACGACGCCTTGAGTACACATAGTCGGAAGCCCG
GAGCAGAGGTGCGTTGTCATGGAACAAGGCGATGGTACCTGGATATACGA
TGGGTCGTGCACGTCAACGAGCGAAATCTGATGCCTTCCAATGTCCCGAG
AGTACGCAGGCTCGAAAGTGGAAGAAACACGCCGTGCAGGCAGCGGGTGG
GCAGGCATCATCGCGTGGGGCTTCCCCCTATCCGGTGGGGACAGCTGATG
GAGTCCAAGGTTTTCACCAGACCGAAAGCCGTTTTTCATCGCTGCTGGCC
AAAGGAAACGGGGAGGTGGCAGCGTCAAGACGTGCAGCGGGTGTCCCGGG
GCCATGGGAACCGTCGTGCACGTCAACGAGCGAAATCTGATGCCTTCCAA
TGTCCCGAGAGTACGCAGGCTCGAAAGTGGAAGAAACACGCCGTGCAGGC
AGCGGGTGGGCAGGCATCATCGCGTGGGGCTTCCCCCTATCCGGTGGGGA
CAGCTGATGGAGTCCAAGGTTTTCACCAGACCGAAAGCCGTTTTTCATCG
CTGCTGGCCAAAGGAAACGGGGAGGTGGCAGCGTCAAGACGTGCAGCGGG
TGTCCCGGGGCCATGGGAACCGCCATCAAGACCACGGAAAAGAACTGTTG
TCTCCGCACAATCGGGTACGACAATGGCTCTCGGAAGCAGGTACGACAAT
GGCCGGACCGGGAGCCACGACAATTTTTACTCCAGAGGAGCAGAGGAGTA
CGGCGCACATCACAACCCGTACCTCAACGGATCGCAAATACCGCTGGGTG
CCTCTAACGGGGCGGGGGCTGGTTTTGAAGAGGGATGGGAACGCCACGGA
CTTCCCCCTCCCCCAATACCTCCGATGCCGCACGCAGGGTTCGGCCCCCA
CGCTGCCGCTCATCAGGTATGCGCAACGATGGGCTGCGTGGTGACCATCA
AGACCACGGAAAAGAACTGTTGTCTCCGCACAATCGGGTACGACAATGGC
TCTCGGAAGCAGGTACGACAATGGCCGGACCGGGAGCCACGACAATTTTT
ACTCCAGAGGAGCAGAGGAGTACGGCGCACATCACAACCCGTACCTCAAC
GGATCGCAAATACCGCTGGGTGCCTCTAACGGGGCGGGGGCTGGTTTTGA
AGAGGGATGGGAACGCCACGGACTTCCCCCTCCCCCAATACCTCCGATGC
CGCACGCAGGGTTCGGCCCCCACGCTGCCGCTCATCAGGTATGCGCAACG
ATGGGCTGCGTGGTGA
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