mRNA_F-serratus_M_contig8.19310.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19310.1
Unique NamemRNA_F-serratus_M_contig8.19310.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8.19310.1 vs. uniprot
Match: A0A836C886_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C886_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.900e-19
Identity = 76/259 (29.34%), Postives = 122/259 (47.10%), Query Frame = 2 
Query:  260 FMPLLVLLAVCGAGIHTVGLTAFSRGYFRWDVACEGMLMMGDNIHLGRIDGVQTYKIGWAQYHDVGPKEGSGTIAMSYTDNGTVGINLGLEEVAGSSITELNWLASIDVASAALGAMTTFGHLLGSVFYAIMLSAMVLLFRSSFRSRRKIFWSA--LVPSGVLLVWLLTVAMMGFYLAVRGN--FKEKILDILYDEHFLCQDDSRIDGDFAYIATSLGCMTSAVVFVLMWRYGHDADSAVAERFGRQGSLVEAS*GIKP 1024
            F+PLLV+L+     IH   LT  S+GYF WD+ CEG+++ G     G +   + Y +GWA++                TD G          VAG++      L  +D A+A  G +T   HL+ +V +A +L A+  LFR  FR+     W A  L   GV+ + +  V ++     V  N  F + ++  L    + C  +  + G++AY      C  +A++  L+   G  AD+AVA RF R+ +L   +   +P
Sbjct:   45 FLPLLVMLSAGALAIHIAALTGSSKGYFSWDIKCEGLVLGGTTS--GSVL-TRRYDLGWAKF--------------VITDGG----------VAGAATP----LGKVDAATAFFGTVTGIVHLVSAVSHAALLYAIAWLFRHDFRAPA---WRAFKLAHRGVVALLVANVVLVMVVFGVTANYAFTDAVMSNLKSSSYFCAANDDVGGEYAYTCAGFACAATALLGALLQWRGARADAAVAWRFNRRKTLAPLAAAPRP 269
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C886_9STRA1.900e-1929.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:657028..659633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1188
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19310.1prot_F-serratus_M_contig8.19310.1Fucus serratus malepolypeptideF-serratus_M_contig8 657663..659457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932369.3254237-UTR-F-serratus_M_contig8:657027..6572711622932369.3254237-UTR-F-serratus_M_contig8:657027..657271Fucus serratus maleUTRF-serratus_M_contig8 657028..657271 +
1690964274.8873446-UTR-F-serratus_M_contig8:657027..6572711690964274.8873446-UTR-F-serratus_M_contig8:657027..657271Fucus serratus maleUTRF-serratus_M_contig8 657028..657271 +
1622932369.3503823-UTR-F-serratus_M_contig8:657644..6576621622932369.3503823-UTR-F-serratus_M_contig8:657644..657662Fucus serratus maleUTRF-serratus_M_contig8 657645..657662 +
1690964274.8989017-UTR-F-serratus_M_contig8:657644..6576621690964274.8989017-UTR-F-serratus_M_contig8:657644..657662Fucus serratus maleUTRF-serratus_M_contig8 657645..657662 +
1622932369.4080076-UTR-F-serratus_M_contig8:659457..6596331622932369.4080076-UTR-F-serratus_M_contig8:659457..659633Fucus serratus maleUTRF-serratus_M_contig8 659458..659633 +
1690964274.9475446-UTR-F-serratus_M_contig8:659457..6596331690964274.9475446-UTR-F-serratus_M_contig8:659457..659633Fucus serratus maleUTRF-serratus_M_contig8 659458..659633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932369.3659499-CDS-F-serratus_M_contig8:657662..6578021622932369.3659499-CDS-F-serratus_M_contig8:657662..657802Fucus serratus maleCDSF-serratus_M_contig8 657663..657802 +
1690964274.9099786-CDS-F-serratus_M_contig8:657662..6578021690964274.9099786-CDS-F-serratus_M_contig8:657662..657802Fucus serratus maleCDSF-serratus_M_contig8 657663..657802 +
1622932369.3806176-CDS-F-serratus_M_contig8:658329..6587771622932369.3806176-CDS-F-serratus_M_contig8:658329..658777Fucus serratus maleCDSF-serratus_M_contig8 658330..658777 +
1690964274.9239056-CDS-F-serratus_M_contig8:658329..6587771690964274.9239056-CDS-F-serratus_M_contig8:658329..658777Fucus serratus maleCDSF-serratus_M_contig8 658330..658777 +
1622932369.3944685-CDS-F-serratus_M_contig8:659295..6594571622932369.3944685-CDS-F-serratus_M_contig8:659295..659457Fucus serratus maleCDSF-serratus_M_contig8 659296..659457 +
1690964274.9354014-CDS-F-serratus_M_contig8:659295..6594571690964274.9354014-CDS-F-serratus_M_contig8:659295..659457Fucus serratus maleCDSF-serratus_M_contig8 659296..659457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19310.1

>prot_F-serratus_M_contig8.19310.1 ID=prot_F-serratus_M_contig8.19310.1|Name=mRNA_F-serratus_M_contig8.19310.1|organism=Fucus serratus male|type=polypeptide|length=250bp
MPLLVLLAVCGAGIHTVGLTAFSRGYFRWDVACEGMLMMGDNIHLGRIDG
VQTYKIGWAQYHDVGPKEGSGTIAMSYTDNGTVGINLGLEEVAGSSITEL
NWLASIDVASAALGAMTTFGHLLGSVFYAIMLSAMVLLFRSSFRSRRKIF
WSALVPSGVLLVWLLTVAMMGFYLAVRGNFKEKILDILYDEHFLCQDDSR
IDGDFAYIATSLGCMTSAVVFVLMWRYGHDADSAVAERFGRQGSLVEAS*
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mRNA from alignment at F-serratus_M_contig8:657028..659633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19310.1 ID=mRNA_F-serratus_M_contig8.19310.1|Name=mRNA_F-serratus_M_contig8.19310.1|organism=Fucus serratus male|type=mRNA|length=2606bp|location=Sequence derived from alignment at F-serratus_M_contig8:657028..659633+ (Fucus serratus male)
ATGTATAGATACTTCTCAGCAGGGAGATTTGAATACGAGGGAGCGTGCGC
CTCGTGGTCGTTGTTTGCCTCCCATCCCGCCCGCTCCTAATCCTACCAGA
GGAGAAAAAACAAAAAGTACGGATCAAGGTGCTAGCACAGCGGGAAACGG
GCAACCTCGTGTTGTCGTGATTTGTCAGGGCAGATCCGATTCTCGTAAGC
CCATACCACGATGGAAACGTGGATATGTTGCCTTCAAGCGCAAGGTACGA
CGTCAGGAAAAGTAGGGAAAATTCGCCTCCACACCCCGGATACGCTGAAA
GTCCCCAGAAGTGTTGGTCTTGCAGTCCTAGAGTATCAATATGAGTCACT
CACTCCGAGAGGTTACAGGCGACATGAATTCATAACCACCGAATTATTTT
TATGTTTCGAACGGAGGATGGTGTCCCACTCGATCACTTCGTCCGTGTCA
CGAGTCAAGCCACGAGTACTCTCCTCCTCGTACTGACAGTGAAACTTGAG
GCAAGCCTGACGGCTACAACTATGAAACGATTCAAGACGTTCCAAGGTCG
AGGTTGGATTCTGATCTTCTTTCCATGAATCGAACATCCTTTCTTTGCGT
CATCTCATCACCAAAAGATCAATTCTACAGTCTTTATGCCGCTGCTGGTG
CTCCTCGCGGTCTGCGGAGCTGGGATACACACAGTCGGCCTCACAGCTTT
CTCGAGGGGATATTTCCGATGGGATGTTGCATGCGAAGGGATGTTGATGA
TGGGCGACAACATTCACCTTGGGAGGTGAGCGAACTACCCTGCATTATGT
TTATGGGGCTGAGGATGCTGGGTGCCCTGCTTTGATCTGGATACTTAAAG
TGGTGCTTCGATAACCACACACAGTACTTCTTCTGTGGGTCGAGTAAGGC
ACTGGGTCGTTGATGGGTGGTTTTATAGGGGAGGGCCGAACGTAACCACG
GCCAGATCTCGCCAAGTAAATAATTTTCCATACAAGCCATGACACGAGCA
TTCATAAGCCATGAAATTGTTCATAAAGGGCTTTCTATTCGGTTCGTGAC
TCAGCCCAAAGATTCCGGCGAACGCCTCCGATCACATGCGCACCAAACGC
ACTACCGTTCGCTCGGAAACAAGGAGAATTTTCCCGCAGATAGAATGCGT
TAAACGAAGTAGCACCGTCATCTCATCGTTCTAAATAGCTATAATAGTGC
GAAATTGGGCGCTCTGTTATGCGCAGGTGGAAGCTTTATCCCCCGATCAT
CAATAACGGCGCACCGAACAATTTTTTTACCAACCGCAAACAAACATGAC
AGGATTGACGGGGTGCAGACATACAAAATTGGGTGGGCGCAATATCATGA
CGTGGGGCCTAAAGAAGGTTCAGGTACAATTGCAATGAGCTACACGGACA
ACGGAACGGTCGGGATCAATCTCGGTCTAGAAGAAGTTGCGGGCTCGAGT
ATAACCGAGCTAAACTGGTTGGCAAGCATTGACGTGGCGAGCGCAGCTCT
TGGTGCCATGACCACATTTGGACATCTTCTTGGCTCCGTGTTCTACGCAA
TTATGCTGTCTGCTATGGTGCTACTCTTTCGCTCGTCCTTCCGCAGCCGC
CGCAAAATATTCTGGTCGGCATTGGTACCTTCGGGTGTCTTACTCGTTTG
GCTTCTTACCGTCGCCATGATGGGATTCTACTTGGCCGTGCGTGGGAACT
TTAAAGAGAAAATTCTGGACATTCTCTACGACGAACACTTCCTCTGCCAG
GTAAGCATACGTACCGATGAGAAAGGCTCGTCCTTTATGGAACTGAAGTA
TGCGACGGCAAACTGTACACTACAGACTTAGCAGCAGCCATGTGCGGTGG
CGTACTGTATCTTGCAAGCTATACTGACGAAGGAACGTCCCCTAATGTCA
TATTTCATTCAGCGATTACTCGAGCAACCTCCGGACAAGGTGCCACGTCC
GATGATACAGTTAATAGTCTTTCGTTTCGTTCATCGTGGAGGACCACGAC
CACAACGACCAACTACTGTGTGCGACGCCCCGTTGAAATATATTCCACGT
ATCATTAGTGTGAATTAATTTGGACCTTTTATCATTACACTATGCCGCCA
AATAAATGTAGAGTCATAATATATACCTGGTACCTGGTAGTGAGCTTGGA
GAGATGACCATGTTAATATTTAAAACACAAAAGTAGTATTATAGTAAAAA
ACTGCGTGTCAATGTTGACGTATGGATTGCTTTTGTTCACGCTCGCTTGT
TTTCTGTATCCTGTCCAGGACGATAGCAGGATTGACGGAGACTTCGCTTA
CATTGCCACCAGCCTCGGCTGCATGACGAGTGCTGTTGTGTTCGTCCTCA
TGTGGCGATATGGTCATGATGCTGACTCCGCAGTGGCCGAACGCTTCGGG
CGCCAGGGATCGTTGGTTGAAGCCAGCTGAGGTATCAAGCCCTGAAGAAA
GAGCAACGCATGTTTGTTGCTGAACGATAACTTGACAACCAGAAGAGATG
ACATGTTGGTGGGAAGGAAAGAGCGGCGCTGTGTAAAGGAAAGCCCGGTC
GTCATCGAGTCTAGTGCCGTGCGGGCTCATTCGTGTCACACGTAATTTGT
CCAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:657028..659633+

>mRNA_F-serratus_M_contig8.19310.1 ID=mRNA_F-serratus_M_contig8.19310.1|Name=mRNA_F-serratus_M_contig8.19310.1|organism=Fucus serratus male|type=CDS|length=1500bp|location=Sequence derived from alignment at F-serratus_M_contig8:657028..659633+ (Fucus serratus male)
ATGCCGCTGCTGGTGCTCCTCGCGGTCTGCGGAGCTGGGATACACACAGT
CGGCCTCACAGCTTTCTCGAGGGGATATTTCCGATGGGATGTTGCATGCG
AAGGGATGTTGATGATGGGCGACAACATTCACCTTGGGAGATGCCGCTGC
TGGTGCTCCTCGCGGTCTGCGGAGCTGGGATACACACAGTCGGCCTCACA
GCTTTCTCGAGGGGATATTTCCGATGGGATGTTGCATGCGAAGGGATGTT
GATGATGGGCGACAACATTCACCTTGGGAGGATTGACGGGGTGCAGACAT
ACAAAATTGGGTGGGCGCAATATCATGACGTGGGGCCTAAAGAAGGTTCA
GGTACAATTGCAATGAGCTACACGGACAACGGAACGGTCGGGATCAATCT
CGGTCTAGAAGAAGTTGCGGGCTCGAGTATAACCGAGCTAAACTGGTTGG
CAAGCATTGACGTGGCGAGCGCAGCTCTTGGTGCCATGACCACATTTGGA
CATCTTCTTGGCTCCGTGTTCTACGCAATTATGCTGTCTGCTATGGTGCT
ACTCTTTCGCTCGTCCTTCCGCAGCCGCCGCAAAATATTCTGGTCGGCAT
TGGTACCTTCGGGTGTCTTACTCGTTTGGCTTCTTACCGTCGCCATGATG
GGATTCTACTTGGCCGTGCGTGGGAACTTTAAAGAGAAAATTCTGGACAT
TCTCTACGACGAACACTTCCTCTGCCAGGATTGACGGGGTGCAGACATAC
AAAATTGGGTGGGCGCAATATCATGACGTGGGGCCTAAAGAAGGTTCAGG
TACAATTGCAATGAGCTACACGGACAACGGAACGGTCGGGATCAATCTCG
GTCTAGAAGAAGTTGCGGGCTCGAGTATAACCGAGCTAAACTGGTTGGCA
AGCATTGACGTGGCGAGCGCAGCTCTTGGTGCCATGACCACATTTGGACA
TCTTCTTGGCTCCGTGTTCTACGCAATTATGCTGTCTGCTATGGTGCTAC
TCTTTCGCTCGTCCTTCCGCAGCCGCCGCAAAATATTCTGGTCGGCATTG
GTACCTTCGGGTGTCTTACTCGTTTGGCTTCTTACCGTCGCCATGATGGG
ATTCTACTTGGCCGTGCGTGGGAACTTTAAAGAGAAAATTCTGGACATTC
TCTACGACGAACACTTCCTCTGCCAGGACGATAGCAGGATTGACGGAGAC
TTCGCTTACATTGCCACCAGCCTCGGCTGCATGACGAGTGCTGTTGTGTT
CGTCCTCATGTGGCGATATGGTCATGATGCTGACTCCGCAGTGGCCGAAC
GCTTCGGGCGCCAGGGATCGTTGGTTGAAGCCAGCTGAGACGATAGCAGG
ATTGACGGAGACTTCGCTTACATTGCCACCAGCCTCGGCTGCATGACGAG
TGCTGTTGTGTTCGTCCTCATGTGGCGATATGGTCATGATGCTGACTCCG
CAGTGGCCGAACGCTTCGGGCGCCAGGGATCGTTGGTTGAAGCCAGCTGA
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