mRNA_F-serratus_M_contig798.19274.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig798.19274.1
Unique NamemRNA_F-serratus_M_contig798.19274.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig798.19274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig798contigF-serratus_M_contig798:101456..103630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1577
Cds size1053
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932368.1238792-UTR-F-serratus_M_contig798:101455..1014921622932368.1238792-UTR-F-serratus_M_contig798:101455..101492Fucus serratus maleUTRF-serratus_M_contig798 101456..101492 +
1690964274.3762994-UTR-F-serratus_M_contig798:101455..1014921690964274.3762994-UTR-F-serratus_M_contig798:101455..101492Fucus serratus maleUTRF-serratus_M_contig798 101456..101492 +
1622932368.2583287-UTR-F-serratus_M_contig798:102964..1030071622932368.2583287-UTR-F-serratus_M_contig798:102964..103007Fucus serratus maleUTRF-serratus_M_contig798 102965..103007 +
1690964274.4392033-UTR-F-serratus_M_contig798:102964..1030071690964274.4392033-UTR-F-serratus_M_contig798:102964..103007Fucus serratus maleUTRF-serratus_M_contig798 102965..103007 +
1622932368.2763093-UTR-F-serratus_M_contig798:103186..1036301622932368.2763093-UTR-F-serratus_M_contig798:103186..103630Fucus serratus maleUTRF-serratus_M_contig798 103187..103630 +
1690964274.449925-UTR-F-serratus_M_contig798:103186..1036301690964274.449925-UTR-F-serratus_M_contig798:103186..103630Fucus serratus maleUTRF-serratus_M_contig798 103187..103630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932368.1731458-CDS-F-serratus_M_contig798:101492..1017261622932368.1731458-CDS-F-serratus_M_contig798:101492..101726Fucus serratus maleCDSF-serratus_M_contig798 101493..101726 +
1690964274.3878992-CDS-F-serratus_M_contig798:101492..1017261690964274.3878992-CDS-F-serratus_M_contig798:101492..101726Fucus serratus maleCDSF-serratus_M_contig798 101493..101726 +
1622932368.192769-CDS-F-serratus_M_contig798:101890..1022441622932368.192769-CDS-F-serratus_M_contig798:101890..102244Fucus serratus maleCDSF-serratus_M_contig798 101891..102244 +
1690964274.3978848-CDS-F-serratus_M_contig798:101890..1022441690964274.3978848-CDS-F-serratus_M_contig798:101890..102244Fucus serratus maleCDSF-serratus_M_contig798 101891..102244 +
1622932368.2177522-CDS-F-serratus_M_contig798:102390..1027351622932368.2177522-CDS-F-serratus_M_contig798:102390..102735Fucus serratus maleCDSF-serratus_M_contig798 102391..102735 +
1690964274.4078717-CDS-F-serratus_M_contig798:102390..1027351690964274.4078717-CDS-F-serratus_M_contig798:102390..102735Fucus serratus maleCDSF-serratus_M_contig798 102391..102735 +
1622932368.2368493-CDS-F-serratus_M_contig798:102844..1029641622932368.2368493-CDS-F-serratus_M_contig798:102844..102964Fucus serratus maleCDSF-serratus_M_contig798 102845..102964 +
1690964274.42469-CDS-F-serratus_M_contig798:102844..1029641690964274.42469-CDS-F-serratus_M_contig798:102844..102964Fucus serratus maleCDSF-serratus_M_contig798 102845..102964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig798.19274.1prot_F-serratus_M_contig798.19274.1Fucus serratus malepolypeptideF-serratus_M_contig798 101493..102964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig798.19274.1

>prot_F-serratus_M_contig798.19274.1 ID=prot_F-serratus_M_contig798.19274.1|Name=mRNA_F-serratus_M_contig798.19274.1|organism=Fucus serratus male|type=polypeptide|length=351bp
MERVTACQDFLSDTVYREMCDSNPGSKQNILFHPTTIAGQAASIEALQGK
KTSFRRIHTEGIGDCFIISLLNGRDGSEEFSFPDVVIDEAKKSIGRVLLQ
HTTVGVYEQPEDVGAADDRPLRLFEADRARACGINLSPRPTLHSLCQDIE
TQMSARHYVNLLALGAATDALKLGLVVLWVQSKDHSDEYVVYVNEMIRLR
QTHRGQNTEGPVVNILFYNASNPTDPDVFKWGNSRIGHSELLVPIKATGG
TQSAIDEGDLGSHTKRVASALSKNIEDALEKEVAMFRAGERSFACSEDTP
SALSIMRQFKKGVSEALRSWVTDATCDLSTKVSPPPIVAILLGGTQKDCF
*
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mRNA from alignment at F-serratus_M_contig798:101456..103630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig798.19274.1 ID=mRNA_F-serratus_M_contig798.19274.1|Name=mRNA_F-serratus_M_contig798.19274.1|organism=Fucus serratus male|type=mRNA|length=2175bp|location=Sequence derived from alignment at F-serratus_M_contig798:101456..103630+ (Fucus serratus male)
AAGCACAGTCCCTGCCCTCTGTCAGATAAAAACTTCGATGGAACGCGTTA
CAGCATGCCAGGACTTCCTTTCGGACACGGTGTATAGGGAAATGTGTGAT
TCTAATCCCGGGAGTAAGCAAAACATATTGTTCCATCCAACGACGATAGC
GGGACAAGCAGCTTCGATCGAAGCACTGCAAGGGAAAAAGACGTCTTTCA
GGCGCATACATACGGAGGGTATCGGAGATTGTTTTATCATCAGTCTCCTC
AACGGTCGCGACGGCAGTGAGGTTAGCGAAGAACAAGCTCTTGTAGTGCA
CCATGCAACAACAATACGAATGTGTTTTGTCTTCGCAGGCAATGATCCTA
CCCATCCGGTTTTTACATGCCACCCTGTCTCATGCGCGCATTCATGGACT
CATTTCAGCATGCATTTGTTGTATATTCGTTCCAGGAGTTCTCTTTTCCG
GACGTGGTCATAGACGAGGCTAAAAAGTCTATTGGTCGAGTCCTTCTACA
GCACACGACAGTCGGAGTGTACGAACAACCTGAAGACGTTGGTGCTGCCG
ACGATCGCCCTTTGAGACTGTTCGAGGCTGATCGTGCTAGGGCATGCGGG
ATAAACTTAAGTCCCCGACCGACCCTGCACTCGTTGTGCCAAGACATAGA
GACACAAATGTCTGCACGGCATTATGTGAACCTCTTGGCATTGGGTGCAG
CAACCGATGCCCTCAAGTTAGGGCTTGTAGTTCTGTGGGTGCAGTCCAAG
GACCACTCGGACGAATATGTTGTCTACGTTAACGAAATGGTGAGCAATCG
AGGTTATTCGTACAGGCGCGTGGGAAAGTAGGATGCCCTAAAAGGACGGT
AGAAGGACCATTTTTGTGCCGAAATATTCCGTGCTAATTATCCCACGCGA
TCGGACTTTCTTGCTGTTAATGAATTGCGGCACAGATACGTTTGCGCCAA
ACACATCGAGGGCAGAACACCGAGGGTCCCGTGGTAAATATATTGTTCTA
CAACGCCTCTAATCCAACGGATCCCGACGTGTTCAAGTGGGGCAATTCGC
GCATCGGACACTCGGAGCTTCTGGTTCCAATCAAGGCAACGGGCGGCACA
CAATCTGCAATCGACGAGGGTGACCTCGGGTCCCATACAAAACGCGTGGC
ATCCGCGTTGTCTAAAAACATTGAGGACGCTTTGGAGAAAGAGGTTGCCA
TGTTCCGCGCGGGAGAAAGAAGCTTTGCTTGTTCCGAAGATACCCCCTCC
GCGCTGTCTATAATGCGGCAGTTCAAAAAGGTGAATAATTCCAGTTTAAC
CGCCCATGTAGCTTTCGGCCGAGACCCACCCGAATTATTAGACAGCTAGT
CAACCCACACGAAAAACTGCGATTGCTTCTCGAATGCAGGGCGTCTCCGA
GGCGCTTCGAAGCTGGGTTACAGATGCCACATGTGATCTCTCGACCAAGG
TGTCCCCGCCGCCGATCGTGGCGATCTTGCTCGGCGGGACTCAGAAGGAC
TGCTTCTAGGAGTTACAAGAACGGAACTGACGGCCATGTTTGACAAACAG
ATGTGAGAGACGAATTTATCGCGAGAGACTAGAGGGGGTGGTAGAATGTT
CCAATCAGAGTAAGTTTGCCGCTCAACTTTGCACGCTTTACCTCTTCCAC
CAGACGAGCACAGACACTTGAGATCTTGACCCCGCGCACACCTGGCCTCG
CACTCCCAATTCCTACTCCCACATCTTGCAGGAAGGAGGTCGCCGATTCT
TTGGCGGAACGTAACACGAGGAAAGCGACCTCGCAGGGTTCTTCGTAGAA
TTCTTCAGTGGCATGTTGATGAAATAGTGTGGTTTGTTGCAAGCGGCAGT
GGAACATTTGTGAATCTGCGTGGAGTTCAGCCTTGCTTGAATTCCCGGTG
GAGCGCGTAGCTGAGATCCATAGGCACGAGTTGAATTACTGTTATTGAAG
CGCCGCTTGCACTCAGTAGACACCTTTTGACCGCAACTCGAATTTGTATT
AGCGCGTGATAATAATAAAACGTACTTGCTGCATAATCTGTCGACGCAGA
CAGAAGGGTGACGACGTTTGGATTGACGGTCCTTTTGAACACAGTATTTT
CAAGAAGAGCGCAGGCGATCTCTTCAATTTCAGTGATATCAATAAGAGAC
GTCAAACACCGTTTTTCATTATTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig798:101456..103630+

>mRNA_F-serratus_M_contig798.19274.1 ID=mRNA_F-serratus_M_contig798.19274.1|Name=mRNA_F-serratus_M_contig798.19274.1|organism=Fucus serratus male|type=CDS|length=2106bp|location=Sequence derived from alignment at F-serratus_M_contig798:101456..103630+ (Fucus serratus male)
ATGGAACGCGTTACAGCATGCCAGGACTTCCTTTCGGACACGGTGTATAG
GGAAATGTGTGATTCTAATCCCGGGAGTAAGCAAAACATATTGTTCCATC
CAACGACGATAGCGGGACAAGCAGCTTCGATCGAAGCACTGCAAGGGAAA
AAGACGTCTTTCAGGCGCATACATACGGAGGGTATCGGAGATTGTTTTAT
CATCAGTCTCCTCAACGGTCGCGACGGCAGTGAGATGGAACGCGTTACAG
CATGCCAGGACTTCCTTTCGGACACGGTGTATAGGGAAATGTGTGATTCT
AATCCCGGGAGTAAGCAAAACATATTGTTCCATCCAACGACGATAGCGGG
ACAAGCAGCTTCGATCGAAGCACTGCAAGGGAAAAAGACGTCTTTCAGGC
GCATACATACGGAGGGTATCGGAGATTGTTTTATCATCAGTCTCCTCAAC
GGTCGCGACGGCAGTGAGGAGTTCTCTTTTCCGGACGTGGTCATAGACGA
GGCTAAAAAGTCTATTGGTCGAGTCCTTCTACAGCACACGACAGTCGGAG
TGTACGAACAACCTGAAGACGTTGGTGCTGCCGACGATCGCCCTTTGAGA
CTGTTCGAGGCTGATCGTGCTAGGGCATGCGGGATAAACTTAAGTCCCCG
ACCGACCCTGCACTCGTTGTGCCAAGACATAGAGACACAAATGTCTGCAC
GGCATTATGTGAACCTCTTGGCATTGGGTGCAGCAACCGATGCCCTCAAG
TTAGGGCTTGTAGTTCTGTGGGTGCAGTCCAAGGACCACTCGGACGAATA
TGTTGTCTACGTTAACGAAATGGAGTTCTCTTTTCCGGACGTGGTCATAG
ACGAGGCTAAAAAGTCTATTGGTCGAGTCCTTCTACAGCACACGACAGTC
GGAGTGTACGAACAACCTGAAGACGTTGGTGCTGCCGACGATCGCCCTTT
GAGACTGTTCGAGGCTGATCGTGCTAGGGCATGCGGGATAAACTTAAGTC
CCCGACCGACCCTGCACTCGTTGTGCCAAGACATAGAGACACAAATGTCT
GCACGGCATTATGTGAACCTCTTGGCATTGGGTGCAGCAACCGATGCCCT
CAAGTTAGGGCTTGTAGTTCTGTGGGTGCAGTCCAAGGACCACTCGGACG
AATATGTTGTCTACGTTAACGAAATGATACGTTTGCGCCAAACACATCGA
GGGCAGAACACCGAGGGTCCCGTGGTAAATATATTGTTCTACAACGCCTC
TAATCCAACGGATCCCGACGTGTTCAAGTGGGGCAATTCGCGCATCGGAC
ACTCGGAGCTTCTGGTTCCAATCAAGGCAACGGGCGGCACACAATCTGCA
ATCGACGAGGGTGACCTCGGGTCCCATACAAAACGCGTGGCATCCGCGTT
GTCTAAAAACATTGAGGACGCTTTGGAGAAAGAGGTTGCCATGTTCCGCG
CGGGAGAAAGAAGCTTTGCTTGTTCCGAAGATACCCCCTCCGCGCTGTCT
ATAATGCGGCAGTTCAAAAAGATACGTTTGCGCCAAACACATCGAGGGCA
GAACACCGAGGGTCCCGTGGTAAATATATTGTTCTACAACGCCTCTAATC
CAACGGATCCCGACGTGTTCAAGTGGGGCAATTCGCGCATCGGACACTCG
GAGCTTCTGGTTCCAATCAAGGCAACGGGCGGCACACAATCTGCAATCGA
CGAGGGTGACCTCGGGTCCCATACAAAACGCGTGGCATCCGCGTTGTCTA
AAAACATTGAGGACGCTTTGGAGAAAGAGGTTGCCATGTTCCGCGCGGGA
GAAAGAAGCTTTGCTTGTTCCGAAGATACCCCCTCCGCGCTGTCTATAAT
GCGGCAGTTCAAAAAGGGCGTCTCCGAGGCGCTTCGAAGCTGGGTTACAG
ATGCCACATGTGATCTCTCGACCAAGGTGTCCCCGCCGCCGATCGTGGCG
ATCTTGCTCGGCGGGACTCAGAAGGACTGCTTCTAGGGCGTCTCCGAGGC
GCTTCGAAGCTGGGTTACAGATGCCACATGTGATCTCTCGACCAAGGTGT
CCCCGCCGCCGATCGTGGCGATCTTGCTCGGCGGGACTCAGAAGGACTGC
TTCTAG
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