mRNA_F-serratus_M_contig797.19268.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE) HSP 1 Score: 309 bits (791), Expect = 2.790e-92 Identity = 256/567 (45.15%), Postives = 306/567 (53.97%), Query Frame = 3
Query: 273 MAALIADTSPMMRKISSETASERRSLGFSPPSPLSFARYLAEGR-HTDHGHGRLHSPNTRSYPPHQTPSPYPRGYGYSAQEAFPYDNAGVPARITPK----------SCRCPR-ECSCASASSSSAPCPNSAEPDSPSAMWRKEK-------------MEGKT-ATSPKQGLYVSGVSGRPTSSKASVA-NRSTQSAR---DAIEDLPRPSKKHKSDWENLLGAVDLELRAQKRAECVPEISSGAVPQVSP----ASCASRRHPLHPSAGDNLYRSSSAGVT------AVDSPEFGSYKPTHRRGG---------DAVSGGGPAYSGSTADAACLLATLPQRMLDRASMSGLAPKAPP-------------------------VSMSSPVLVSPPPVGLIPGQPLRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNFPDGIEEQLHDLSNGGRTPYPTAGAAANAVEGSGSGGAAAARSATPPALEQAEGSNGVG-------RKRSRKSSYGGNGDDDEWIRGEGPWNNS 1730
M ALIADTSP++R I S+ A +RRS FSP SP+ ++YL+EG DH R HSP+ +Y + P+ YP YGY+ +F + + VPA + SCRC R +CSC S+ S +A +S+ + P AMWR K G+ A P + VS S P+ S A +A NR S+R IE PSKK SDWENLLGAVDLELRAQ+R++ VP+ S+ A P S A A+ H H D + G T A SPEFG K G YSGSTADAACLLATLPQRMLDR V + P LVS P P+RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDA+ALQHFA+GAKLNFPDGIE QL+D+S+ P+ TAGA GGAAA RS TPPA EG KRSRK+++G + D+D W R +GPW+ S
Sbjct: 1 MTALIADTSPILRNIPSDPA-DRRSFEFSP-SPMP-SQYLSEGTARQDH---RRHSPSPHNYTAREVPALYPHRYGYNIGGSFAHSDPEVPAVAEKQQQQLAFKPTSSCRCQRRQCSCNSSPSETAQ-KDSSSSEPPHAMWRNSKGGDANMTTARPSFFHGEAPAQQPPAAVSVSAPSRSPSPSAAILAQNRQQHSSRVLPRTIELTSSPSKK--SDWENLLGAVDLELRAQQRSKFVPD-STPATPVPSHHYARAINAAHLHYQHQPLDDAPPLLTGGGYTQQQRAAASVSPEFGPVKTAPAPAGRHXXXXXXXXXXXXXXXXYSGSTADAACLLATLPQRMLDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGIMPPALVS---ASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSVSGRPFATAGA----------GGAAAPRSCTPPAT-YLEGDAAAAPALPSPTAKRSRKTAFGDH-DEDGWAREDGPWHPS 542
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI) HSP 1 Score: 234 bits (596), Expect = 2.630e-65 Identity = 202/488 (41.39%), Postives = 239/488 (48.98%), Query Frame = 3
Query: 273 MAALIADTSPMMRKISSETASERRSLGFSPPSPLSFARYLAEGRHT-DHGHGRLHSPNTRSYPPHQTPSPYPRGYGYSAQEAFPYDNAGVPARITPKSCRCPREC---------------------SCASASSSSAPCPNSAEPDSPSAMWRKEKMEGKTATSPKQGLY--------------VSGVSGRPTSSKASVA-NRSTQSAR---DAIEDLPRPSKKHKSDWENLLGAVDLELRAQKRAECVPEISSGAVPQVSP----ASCASRRHPLHPSAGD-----------------NLYRSSSAGVTAVDSPEFGSYK--PTHRRGGDAVSGG------GPAYSGSTADAACLLATLPQRMLDRASMSGLAPKAPPVSMSSPVLVSPPPVGLIPGQPLRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNFPDGIEEQLHDLSNGGRTPY 1529
M ALIADTSP++R I S+ A +RRS FSP SP+ A+YL+EG + DH R HSP+ SY + P+ YP YGY+ +F + + VP + + SSSS P P AMWR K T+ + GL+ VS S P+ S A +A N+ S+R IE P+KK SDWENLLGAVDLELRAQ+R+E VP+ S+ A P S A A+ H H D Y +V SPEFG K P R GPAYSGSTADAACLL ASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDA+ALQHFA+GAKLNFPDGIE QL+D+S+ TP+
Sbjct: 1 MTALIADTSPILRNIPSDPA-DRRSFEFSP-SPMP-AQYLSEGTASQDH---RRHSPSPHSYTAREVPALYPHRYGYNMGGSFAHSDPQVPVAVEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQKDSSSSEP---------PHAMWRNSKGGDANMTTARPGLFHGEAPAQQPPAAVSVSAPSRSPSPSAAILAQNQQQHSSRVMPRTIELTSSPAKK--SDWENLLGAVDLELRAQQRSEFVPD-STPATPVPSHHYAHAINAAHLHHQHQPLDDAPPLLTGXXXXXXXXXXXXYTQHQPAAASV-SPEFGPIKTAPAARHXXXXXXXXXXXXXXGPAYSGSTADAACLL-----------------------------------------------ASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSAD-TPF 421
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A835Z3I9_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I9_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.260e-26 Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 3
Query: 1272 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLN 1469
QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGV+DSE AARAY+ SAL+HF GAKLN
Sbjct: 227 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVYDSELQAARAYNDSALEHFGAGAKLN 292
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK) HSP 1 Score: 118 bits (295), Expect = 6.750e-26 Identity = 53/72 (73.61%), Postives = 66/72 (91.67%), Query Frame = 3
Query: 1266 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNFPDG 1481
RVQ++GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVF++E +AA+AYD SA+++F GA LNFPDG
Sbjct: 137 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPDG 208
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK) HSP 1 Score: 118 bits (295), Expect = 9.100e-26 Identity = 53/72 (73.61%), Postives = 66/72 (91.67%), Query Frame = 3
Query: 1266 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNFPDG 1481
RVQ++GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVF++E +AA+AYD SA+++F GA LNFPDG
Sbjct: 150 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPDG 221
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: D7FLT6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT6_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.820e-24 Identity = 60/87 (68.97%), Postives = 68/87 (78.16%), Query Frame = 3
Query: 1284 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNFPDGIEEQLHDLSNGGRTPYPTAGA 1544
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDA+A H G++LN PD IE +L++LS P+ TAGA
Sbjct: 304 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVH-CPGSQLNNPDQIERELYELSAADGKPFATAGA 389
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A6H5KY97_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY97_9PHAE) HSP 1 Score: 118 bits (295), Expect = 3.890e-24 Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 3
Query: 1284 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNFPDGIEEQLHDLSNGGRTPYPTAGA 1544
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDA+A + + G++LN PD IE +LH+LS P+ TAGA
Sbjct: 421 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAA-RVYCPGSQLNNPDQIERELHELSAADGKPFATAGA 506
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A835YVU4_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU4_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.270e-17 Identity = 51/78 (65.38%), Postives = 54/78 (69.23%), Query Frame = 3
Query: 1275 ASGRRGPRGQSRFKGVCITRAGKWRAVI-------------YIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLN 1469
A RRGPRGQSRFKGVCITRAGKWRAVI +IGR+QKYLGVFDSE AA AY+ SA Q F AKLN
Sbjct: 187 AKSRRGPRGQSRFKGVCITRAGKWRAVICEWLAAVAEFLHNHIGRRQKYLGVFDSEVQAAVAYNESAKQFFGAEAKLN 264
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 8.150e-15 Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 3
Query: 1284 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNF 1472
RRG +G+S ++GVC+TR GKWRAVIY RKQ YLGVF+SE DAA+A+D +A HF A +NF
Sbjct: 22 RRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.180e-14 Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query: 1311 FKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDASALQHFAQGAKLNF 1472
++GVC+TR GKWRAVIY RKQ YLGVF+SE DAA+A+D +A QHF A +NF
Sbjct: 1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig797.19268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig797.19268.1 >prot_F-serratus_M_contig797.19268.1 ID=prot_F-serratus_M_contig797.19268.1|Name=mRNA_F-serratus_M_contig797.19268.1|organism=Fucus serratus male|type=polypeptide|length=492bp MAALIADTSPMMRKISSETASERRSLGFSPPSPLSFARYLAEGRHTDHGHback to top mRNA from alignment at F-serratus_M_contig797:169461..172562- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig797.19268.1 ID=mRNA_F-serratus_M_contig797.19268.1|Name=mRNA_F-serratus_M_contig797.19268.1|organism=Fucus serratus male|type=mRNA|length=3102bp|location=Sequence derived from alignment at F-serratus_M_contig797:169461..172562- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig797:169461..172562- >mRNA_F-serratus_M_contig797.19268.1 ID=mRNA_F-serratus_M_contig797.19268.1|Name=mRNA_F-serratus_M_contig797.19268.1|organism=Fucus serratus male|type=CDS|length=2952bp|location=Sequence derived from alignment at F-serratus_M_contig797:169461..172562- (Fucus serratus male)back to top |