mRNA_F-serratus_M_contig796.19254.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig796.19254.1
Unique NamemRNA_F-serratus_M_contig796.19254.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig796.19254.1 vs. uniprot
Match: D8LEU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU6_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.030e-24
Identity = 75/159 (47.17%), Postives = 82/159 (51.57%), Query Frame = 1 
Query:   31 PGGESAFTPKWNGLTNPREAARARSMVAAAGVIRRDNETRSSLPTRKPDTVAAEFSRHLQGVDKYPLELARLCRFAQFLTENNLFREAYEVILHAVSSSTV----GASSTDNIRGNIC----------RLQFPVS---------LPSGLGGQLLLIASR 438
            PG     TP    +   R AA      A    + R      + P  KPD VAA FS HL GVDKYPLELARLCRFAQFLTEN L REAYEVILH +SS T     G S  DN RGN            R   P S         LP+GL GQLL++A R
Sbjct: 2330 PGSVEEDTPATGSVRCRRGAAGLMQSGAVVPGLERRGSKVGAKPPPKPDAVAAAFSAHLHGVDKYPLELARLCRFAQFLTENELLREAYEVILHILSSFTTSERDGISGKDN-RGNYXXXXXXXXXXSRPATPPSSWSFSPLPALPTGLRGQLLVVAGR 2487
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BLAST of mRNA_F-serratus_M_contig796.19254.1 vs. uniprot
Match: A0A6H5KGL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.560e-17
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  103 SMVAAAGVIRRDNETRSSLPTRKPDTVAAEFSRHLQGVDKYPLELARLCRFAQFLTENNLFREAYEVILHAVSS-STVGASST 348
            S     G  RR +   +  PT KPD VAA FS HL GVDKYPLELARLCRFAQFLTEN L REAYE + H   +  TV  +ST
Sbjct: 2432 SAAVVPGGKRRGSRVGAKPPT-KPDAVAAAFSAHLHGVDKYPLELARLCRFAQFLTENELLREAYEAVRHVKEAVRTVADNST 2513
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig796.19254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEU6_ECTSI5.030e-2447.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGL4_9PHAE4.560e-1759.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig796contigF-serratus_M_contig796:164887..165757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue5.4e-21
Seed eggNOG ortholog2880.D8LEU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs2D07S@1,2SD4J@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size556
Cds size555
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932364.557177-CDS-F-serratus_M_contig796:164886..1651861622932364.557177-CDS-F-serratus_M_contig796:164886..165186Fucus serratus maleCDSF-serratus_M_contig796 164887..165186 +
1690964272.8272212-CDS-F-serratus_M_contig796:164886..1651861690964272.8272212-CDS-F-serratus_M_contig796:164886..165186Fucus serratus maleCDSF-serratus_M_contig796 164887..165186 +
1622932364.5900824-CDS-F-serratus_M_contig796:165502..1657571622932364.5900824-CDS-F-serratus_M_contig796:165502..165757Fucus serratus maleCDSF-serratus_M_contig796 165503..165757 +
1690964272.8386695-CDS-F-serratus_M_contig796:165502..1657571690964272.8386695-CDS-F-serratus_M_contig796:165502..165757Fucus serratus maleCDSF-serratus_M_contig796 165503..165757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig796.19254.1prot_F-serratus_M_contig796.19254.1Fucus serratus malepolypeptideF-serratus_M_contig796 164887..165757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig796.19254.1

>prot_F-serratus_M_contig796.19254.1 ID=prot_F-serratus_M_contig796.19254.1|Name=mRNA_F-serratus_M_contig796.19254.1|organism=Fucus serratus male|type=polypeptide|length=185bp
SAPVARIQDYPGGESAFTPKWNGLTNPREAARARSMVAAAGVIRRDNETR
SSLPTRKPDTVAAEFSRHLQGVDKYPLELARLCRFAQFLTENNLFREAYE
VILHAVSSSTVGASSTDNIRGNICRLQFPVSLPSGLGGQLLLIASRLAMA
VGRYSAAVRHVKVAIHGVTANGIHDRYHIDHLRH*
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mRNA from alignment at F-serratus_M_contig796:164887..165757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig796.19254.1 ID=mRNA_F-serratus_M_contig796.19254.1|Name=mRNA_F-serratus_M_contig796.19254.1|organism=Fucus serratus male|type=mRNA|length=871bp|location=Sequence derived from alignment at F-serratus_M_contig796:164887..165757+ (Fucus serratus male)
AGTGCACCAGTAGCCAGGATACAAGATTATCCGGGCGGGGAGTCGGCGTT
CACACCCAAGTGGAACGGCCTGACTAATCCTCGGGAAGCGGCACGAGCGC
GCTCGATGGTAGCAGCGGCGGGAGTTATTCGACGCGACAATGAGACGAGG
TCGTCATTACCAACGCGAAAACCAGATACCGTCGCCGCAGAGTTCTCGAG
ACATCTCCAGGGAGTGGACAAGTACCCCCTGGAGCTGGCTCGCTTGTGCC
GCTTCGCACAATTTTTGACCGAGAATAACCTGTTCCGAGAGGCTTATGAG
GTGAGGACGAACCTCTCGGCAGAGCAAAGGGGGACCTCTCGGAAGAGCAA
AGGGGAGGAATCCGAAGAAAAATTGTTAAGGTCAAGGGACTTGGCAAAAA
GATTAAGTATGCAATGCCCTCACAACATTAGTCACATGCGCGGTTGGGGT
GAAGTTGTGCAGAAAATGTTGACTTCGATCGAGTTCAGGTGGGGTTTCAG
CTTCCTATCCTTCTCCGTCGACGAAAGTACATTGACAAAGCCTGTGGCGA
CGCGACGCTCGCTACTTATCATACGTAACATCACCTACCATTATCGATCC
AATCCACGCGCGCAAGGTGATCCTCCACGCTGTTTCATCTTCAACCGTCG
GGGCAAGCAGTACCGACAACATTCGAGGGAACATTTGCCGTCTGCAGTTT
CCCGTGTCGCTTCCGTCGGGCCTGGGAGGCCAACTTTTGCTTATTGCAAG
CCGGCTGGCCATGGCTGTCGGCCGCTATTCGGCGGCTGTCCGACACGTTA
AAGTGGCCATCCACGGCGTTACTGCCAATGGAATCCACGATAGGTATCAT
ATTGACCACTTGCGGCATTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig796:164887..165757+

>mRNA_F-serratus_M_contig796.19254.1 ID=mRNA_F-serratus_M_contig796.19254.1|Name=mRNA_F-serratus_M_contig796.19254.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig796:164887..165757+ (Fucus serratus male)
AGTGCACCAGTAGCCAGGATACAAGATTATCCGGGCGGGGAGTCGGCGTT
CACACCCAAGTGGAACGGCCTGACTAATCCTCGGGAAGCGGCACGAGCGC
GCTCGATGGTAGCAGCGGCGGGAGTTATTCGACGCGACAATGAGACGAGG
TCGTCATTACCAACGCGAAAACCAGATACCGTCGCCGCAGAGTTCTCGAG
ACATCTCCAGGGAGTGGACAAGTACCCCCTGGAGCTGGCTCGCTTGTGCC
GCTTCGCACAATTTTTGACCGAGAATAACCTGTTCCGAGAGGCTTATGAG
AGTGCACCAGTAGCCAGGATACAAGATTATCCGGGCGGGGAGTCGGCGTT
CACACCCAAGTGGAACGGCCTGACTAATCCTCGGGAAGCGGCACGAGCGC
GCTCGATGGTAGCAGCGGCGGGAGTTATTCGACGCGACAATGAGACGAGG
TCGTCATTACCAACGCGAAAACCAGATACCGTCGCCGCAGAGTTCTCGAG
ACATCTCCAGGGAGTGGACAAGTACCCCCTGGAGCTGGCTCGCTTGTGCC
GCTTCGCACAATTTTTGACCGAGAATAACCTGTTCCGAGAGGCTTATGAG
GTGATCCTCCACGCTGTTTCATCTTCAACCGTCGGGGCAAGCAGTACCGA
CAACATTCGAGGGAACATTTGCCGTCTGCAGTTTCCCGTGTCGCTTCCGT
CGGGCCTGGGAGGCCAACTTTTGCTTATTGCAAGCCGGCTGGCCATGGCT
GTCGGCCGCTATTCGGCGGCTGTCCGACACGTTAAAGTGGCCATCCACGG
CGTTACTGCCAATGGAATCCACGATAGGTATCATATTGACCACTTGCGGC
ATTAGGTGATCCTCCACGCTGTTTCATCTTCAACCGTCGGGGCAAGCAGT
ACCGACAACATTCGAGGGAACATTTGCCGTCTGCAGTTTCCCGTGTCGCT
TCCGTCGGGCCTGGGAGGCCAACTTTTGCTTATTGCAAGCCGGCTGGCCA
TGGCTGTCGGCCGCTATTCGGCGGCTGTCCGACACGTTAAAGTGGCCATC
CACGGCGTTACTGCCAATGGAATCCACGATAGGTATCATATTGACCACTT
GCGGCATTAG
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