mRNA_F-serratus_M_contig796.19247.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig796.19247.1
Unique NamemRNA_F-serratus_M_contig796.19247.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig796.19247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig796contigF-serratus_M_contig796:99428..99966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932363.1342502-CDS-F-serratus_M_contig796:99427..996161622932363.1342502-CDS-F-serratus_M_contig796:99427..99616Fucus serratus maleCDSF-serratus_M_contig796 99428..99616 +
1690964272.1170552-CDS-F-serratus_M_contig796:99427..996161690964272.1170552-CDS-F-serratus_M_contig796:99427..99616Fucus serratus maleCDSF-serratus_M_contig796 99428..99616 +
1622932363.1508646-CDS-F-serratus_M_contig796:99899..999651622932363.1508646-CDS-F-serratus_M_contig796:99899..99965Fucus serratus maleCDSF-serratus_M_contig796 99900..99965 +
1690964272.130112-CDS-F-serratus_M_contig796:99899..999651690964272.130112-CDS-F-serratus_M_contig796:99899..99965Fucus serratus maleCDSF-serratus_M_contig796 99900..99965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig796.19247.1prot_F-serratus_M_contig796.19247.1Fucus serratus malepolypeptideF-serratus_M_contig796 99428..99965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig796.19247.1

>prot_F-serratus_M_contig796.19247.1 ID=prot_F-serratus_M_contig796.19247.1|Name=mRNA_F-serratus_M_contig796.19247.1|organism=Fucus serratus male|type=polypeptide|length=85bp
GSGSATTVSPDGGGGDGQTSRCPVEGDCAVKNGGHGMISSVEDIYAAATA
ALSKALVHCKRFEVWEATQPSDDSGNFFVDTPITR
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mRNA from alignment at F-serratus_M_contig796:99428..99966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig796.19247.1 ID=mRNA_F-serratus_M_contig796.19247.1|Name=mRNA_F-serratus_M_contig796.19247.1|organism=Fucus serratus male|type=mRNA|length=539bp|location=Sequence derived from alignment at F-serratus_M_contig796:99428..99966+ (Fucus serratus male)
GGGAGCGGTTCGGCGACTACAGTTTCGCCTGATGGAGGGGGCGGAGACGG
GCAAACGTCGAGATGTCCCGTGGAGGGAGATTGTGCCGTGAAGAACGGCG
GGCACGGAATGATATCATCCGTAGAGGACATTTATGCGGCCGCCACGGCC
GCTCTGAGCAAGGCGCTTGTTCATTGCAAACGGTTCGAGGTGTGGAGGTT
TATGCAGGGCTTTTCGTACAACTGCTGCAAGCTCGTCTTCAAAGGACTGT
TTCGGTCGGTTGATCGGATGAAGCGAGATCCCTATCCCTTGATGGGAAGG
ATTGCAGCAGAAGAACTCCGGCTCAACGACGGCATTCCGTTTCCCGTTTT
TTTTTTTTTAAATGAGGTTGTTAGGTCGGTGCATGATCATTTTGAATTTC
ATCAACTGTCAGTCGTCTTCGTGGCCTCTTGGGAAGATCGCCGAGCAATC
CCTTATGTCCTCGTCCGCCAAGGTGTGGGAGGCGACGCAACCATCCGACG
ACAGCGGTAATTTTTTCGTGGATACCCCTATTACAAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig796:99428..99966+

>mRNA_F-serratus_M_contig796.19247.1 ID=mRNA_F-serratus_M_contig796.19247.1|Name=mRNA_F-serratus_M_contig796.19247.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig796:99428..99966+ (Fucus serratus male)
GGGAGCGGTTCGGCGACTACAGTTTCGCCTGATGGAGGGGGCGGAGACGG
GCAAACGTCGAGATGTCCCGTGGAGGGAGATTGTGCCGTGAAGAACGGCG
GGCACGGAATGATATCATCCGTAGAGGACATTTATGCGGCCGCCACGGCC
GCTCTGAGCAAGGCGCTTGTTCATTGCAAACGGTTCGAGGGGAGCGGTTC
GGCGACTACAGTTTCGCCTGATGGAGGGGGCGGAGACGGGCAAACGTCGA
GATGTCCCGTGGAGGGAGATTGTGCCGTGAAGAACGGCGGGCACGGAATG
ATATCATCCGTAGAGGACATTTATGCGGCCGCCACGGCCGCTCTGAGCAA
GGCGCTTGTTCATTGCAAACGGTTCGAGGTGTGGGAGGCGACGCAACCAT
CCGACGACAGCGGTAATTTTTTCGTGGATACCCCTATTACAAGGGTGTGG
GAGGCGACGCAACCATCCGACGACAGCGGTAATTTTTTCGTGGATACCCC
TATTACAAGG
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