mRNA_F-serratus_M_contig7948.19238.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 113 bits (282), Expect = 2.710e-26 Identity = 60/143 (41.96%), Postives = 90/143 (62.94%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
WRK E E+ + + +V R +D+ ++GSK +FK G DG+VEKYK RLVAQGF QVE + Y E ++ + IR+LLA+AA D ++ D + AFL ++++EIY+++P + + AV RL +A+ GL QA R W
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 104 bits (260), Expect = 2.350e-23 Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
W+ E+L V+ Y +V R +D+ VVG K +F+ G DG++EKYK R+VA+GF QVE V YT+ ++ A IR LLA+AA D ++ D + AFL ++D+EI++ P FQ V +L +A+ GL QA R W
Sbjct: 297 WKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREW 439
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE) HSP 1 Score: 99.0 bits (245), Expect = 2.430e-21 Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
W K ++E+ + E +T K + +K ++K + DG ++K+K RLV QGF Q + Y + +S A A+ +R LL++AA+K+ KL FD AFL +++EIY++ PE F + S V +LNR++ GL QA RCW
Sbjct: 257 WEKAMQSEIDSLHENKTWTLANLPDGKKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCW 399
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI) HSP 1 Score: 98.6 bits (244), Expect = 3.480e-21 Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
W+ E+L + Y +V R +++ VVG K +F+ G DG VE+YK RLVAQGF QVE + Y+E ++ + A IR +L +AA D ++ D + AFL D+D+EI++ P+ G V RL +A+ GL QA R W
Sbjct: 945 WKAACAEELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQGSSCPDGHVWRLRKALYGLRQASREW 1087
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 98.6 bits (244), Expect = 3.520e-21 Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQ-EFSGAVGRLNRAINGLVQAGRCW 429
WR EM + E + V K+K VVG + +F +G DGK+++YK RLVAQG+ Q + Y E ++ A IR+L+++AA D KL D + AFL +++E+Y+++P F+ E + V RLN+++ GL Q+ R W
Sbjct: 864 WRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAW 1007
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 97.8 bits (242), Expect = 4.520e-21 Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
W+ EML V+ + +V K++ VVGSK +F+ G +GK+EKYK RLVAQGF QV+ + YTE ++ A IR LL++AA D ++ D + AFL D+D+EIY++ P G V +L +++ L QA W
Sbjct: 9 WKIACAQEMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEW 151
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY) HSP 1 Score: 97.1 bits (240), Expect = 1.210e-20 Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
W+ E E+ V+ +T+V + K + +V K ++ G DG+V KYK RLVA+GF Q+E V Y E ++ + IR LLA+AA + ++ D + AFL D+++EIY++ P F+ G V +LN+++ GL QA R W
Sbjct: 984 WKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASREW 1126
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 96.7 bits (239), Expect = 1.620e-20 Identity = 54/145 (37.24%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEF--QEFSGAVGRLNRAINGLVQAGRCW 429
W++ ++E ++E + V+ K K VVGSK +FK ++G V++YK RLVAQG+ Q E V Y+E +S IR LLA++ AK+ ++ D + AFL+ ++++EIY+ P+ + +E V +L ++I GL Q+ RCW
Sbjct: 825 WKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCW 969
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY) HSP 1 Score: 94.0 bits (232), Expect = 8.430e-20 Identity = 53/143 (37.06%), Postives = 84/143 (58.74%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
W+ E E+ V+ +T+V + K + +V K ++ G DG+V KYK RLVA+GF Q+E V Y E ++ + IR LLA+AA + ++ D + AFL D+++EIY++ P F+ G V +LN+++ GL QA W
Sbjct: 160 WKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASCEW 302
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 94.0 bits (232), Expect = 1.450e-19 Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQ--EFSGAVGRLNRAINGLVQAGRCW 429
W+K ++E ++E + V DK +VGS+ +FK DG VEK+K RLVAQG+ Q E + Y E +S IR LLA+A D ++ D AFL+ D+ EIY++ PE ++ E V +L +++ GL Q+ RCW
Sbjct: 848 WKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCW 992 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7948.19238.1 >prot_F-serratus_M_contig7948.19238.1 ID=prot_F-serratus_M_contig7948.19238.1|Name=mRNA_F-serratus_M_contig7948.19238.1|organism=Fucus serratus male|type=polypeptide|length=70bp MLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFback to top mRNA from alignment at F-serratus_M_contig7948:5674..6102+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7948.19238.1 ID=mRNA_F-serratus_M_contig7948.19238.1|Name=mRNA_F-serratus_M_contig7948.19238.1|organism=Fucus serratus male|type=mRNA|length=429bp|location=Sequence derived from alignment at F-serratus_M_contig7948:5674..6102+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7948:5674..6102+ >mRNA_F-serratus_M_contig7948.19238.1 ID=mRNA_F-serratus_M_contig7948.19238.1|Name=mRNA_F-serratus_M_contig7948.19238.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig7948:5674..6102+ (Fucus serratus male)back to top |