mRNA_F-serratus_M_contig793.19232.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig793.19232.1
Unique NamemRNA_F-serratus_M_contig793.19232.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig793.19232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig793contigF-serratus_M_contig793:265761..266637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size878
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932357.7446425-CDS-F-serratus_M_contig793:265760..2662521622932357.7446425-CDS-F-serratus_M_contig793:265760..266252Fucus serratus maleCDSF-serratus_M_contig793 265761..266252 +
1690964269.4789236-CDS-F-serratus_M_contig793:265760..2662521690964269.4789236-CDS-F-serratus_M_contig793:265760..266252Fucus serratus maleCDSF-serratus_M_contig793 265761..266252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932357.7698634-UTR-F-serratus_M_contig793:266252..2666371622932357.7698634-UTR-F-serratus_M_contig793:266252..266637Fucus serratus maleUTRF-serratus_M_contig793 266253..266637 +
1690964269.4988499-UTR-F-serratus_M_contig793:266252..2666371690964269.4988499-UTR-F-serratus_M_contig793:266252..266637Fucus serratus maleUTRF-serratus_M_contig793 266253..266637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig793.19232.1prot_F-serratus_M_contig793.19232.1Fucus serratus malepolypeptideF-serratus_M_contig793 265761..266252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig793.19232.1

>prot_F-serratus_M_contig793.19232.1 ID=prot_F-serratus_M_contig793.19232.1|Name=mRNA_F-serratus_M_contig793.19232.1|organism=Fucus serratus male|type=polypeptide|length=164bp
LFPCPRACLRIWSRETGSAVPSRVSLLISIFFFFSLIADGPHNYHPACGH
KGSSHPSPVHAFQFLSRCKFSTLTTRQPIVEFNLLTSPRFPLRKNESKSY
FGKNRTHDFRTSRCAGYLSSSNHPFTREKLTIAIDPPRATSALSLSRYVW
SSHTGIAECGSTV*
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mRNA from alignment at F-serratus_M_contig793:265761..266637+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig793.19232.1 ID=mRNA_F-serratus_M_contig793.19232.1|Name=mRNA_F-serratus_M_contig793.19232.1|organism=Fucus serratus male|type=mRNA|length=877bp|location=Sequence derived from alignment at F-serratus_M_contig793:265761..266637+ (Fucus serratus male)
TTATTCCCCTGCCCCCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGG
TTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATTTTTTTTTTTT
TTTCACTTATAGCCGATGGACCTCATAATTACCATCCTGCCTGTGGTCAC
AAAGGATCTTCCCATCCCTCCCCGGTTCACGCCTTCCAATTTTTATCGCG
ATGCAAGTTCAGCACTCTTACAACTCGTCAACCAATTGTTGAATTTAACT
TACTCACGTCCCCACGCTTTCCGTTACGAAAGAATGAAAGCAAATCCTAC
TTTGGTAAGAATCGAACTCACGACTTCCGCACTAGCAGGTGTGCAGGTTA
CCTTTCGTCAAGTAACCATCCTTTCACACGCGAGAAACTCACGATAGCTA
TCGACCCACCTCGCGCAACGTCGGCACTCTCACTGTCCCGCTATGTATGG
TCATCACATACTGGTATAGCAGAGTGTGGATCAACCGTGTAAGGTTGCCA
ATCCTGCTCGTGGTTAGCTGAAGAGGAAAAATTGTTATTCCCCTGCCCCC
GTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCC
CGCGTCAGCCTGCTCATCTCCATTTTTTTATTTTATTTTTCACTTATAGC
CGATGGACCTCATAATTACCATCCTGCCTGTGGTCACAAAGGATCTTCCC
ATCCCTCCCCGGTTCACGCCTTACAATTTTTATCGCGATGCAAGTTCAGC
ACTCTTACAACTCGTCAACCAGTTGTTGAATTTAACTTACTCACGTCCCC
ACGCTTTCCGTTACGAAAGAATGAAAACAAATCCTACTTTGGTAAGAATC
GAACTCACGACTTCCGCACTAGCAGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig793:265761..266637+

>mRNA_F-serratus_M_contig793.19232.1 ID=mRNA_F-serratus_M_contig793.19232.1|Name=mRNA_F-serratus_M_contig793.19232.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig793:265761..266637+ (Fucus serratus male)
TTATTCCCCTGCCCCCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGG
TTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATTTTTTTTTTTT
TTTCACTTATAGCCGATGGACCTCATAATTACCATCCTGCCTGTGGTCAC
AAAGGATCTTCCCATCCCTCCCCGGTTCACGCCTTCCAATTTTTATCGCG
ATGCAAGTTCAGCACTCTTACAACTCGTCAACCAATTGTTGAATTTAACT
TACTCACGTCCCCACGCTTTCCGTTACGAAAGAATGAAAGCAAATCCTAC
TTTGGTAAGAATCGAACTCACGACTTCCGCACTAGCAGGTGTGCAGGTTA
CCTTTCGTCAAGTAACCATCCTTTCACACGCGAGAAACTCACGATAGCTA
TCGACCCACCTCGCGCAACGTCGGCACTCTCACTGTCCCGCTATGTATGG
TCATCACATACTGGTATAGCAGAGTGTGGATCAACCGTGTAATTATTCCC
CTGCCCCCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCG
TCCCGTCCCGCGTCAGCCTGCTCATCTCCATTTTTTTTTTTTTTTCACTT
ATAGCCGATGGACCTCATAATTACCATCCTGCCTGTGGTCACAAAGGATC
TTCCCATCCCTCCCCGGTTCACGCCTTCCAATTTTTATCGCGATGCAAGT
TCAGCACTCTTACAACTCGTCAACCAATTGTTGAATTTAACTTACTCACG
TCCCCACGCTTTCCGTTACGAAAGAATGAAAGCAAATCCTACTTTGGTAA
GAATCGAACTCACGACTTCCGCACTAGCAGGTGTGCAGGTTACCTTTCGT
CAAGTAACCATCCTTTCACACGCGAGAAACTCACGATAGCTATCGACCCA
CCTCGCGCAACGTCGGCACTCTCACTGTCCCGCTATGTATGGTCATCACA
TACTGGTATAGCAGAGTGTGGATCAACCGTGTAA
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