mRNA_F-serratus_M_contig792.19211.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig792.19211.1
Unique NamemRNA_F-serratus_M_contig792.19211.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig792.19211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig792contigF-serratus_M_contig792:180706..181123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size419
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932355.8546536-UTR-F-serratus_M_contig792:180705..1807091622932355.8546536-UTR-F-serratus_M_contig792:180705..180709Fucus serratus maleUTRF-serratus_M_contig792 180706..180709 +
1690964268.6356578-UTR-F-serratus_M_contig792:180705..1807091690964268.6356578-UTR-F-serratus_M_contig792:180705..180709Fucus serratus maleUTRF-serratus_M_contig792 180706..180709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932355.8706508-CDS-F-serratus_M_contig792:180709..1811231622932355.8706508-CDS-F-serratus_M_contig792:180709..181123Fucus serratus maleCDSF-serratus_M_contig792 180710..181123 +
1690964268.648363-CDS-F-serratus_M_contig792:180709..1811231690964268.648363-CDS-F-serratus_M_contig792:180709..181123Fucus serratus maleCDSF-serratus_M_contig792 180710..181123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig792.19211.1prot_F-serratus_M_contig792.19211.1Fucus serratus malepolypeptideF-serratus_M_contig792 180710..181123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig792.19211.1

>prot_F-serratus_M_contig792.19211.1 ID=prot_F-serratus_M_contig792.19211.1|Name=mRNA_F-serratus_M_contig792.19211.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MKLATGTIDVSNEGAPREPEQSVPSSLVESSPNWSEVGVKVVPLDTDTSE
AVSVFDSEETQREWRAKPPPPSKHSWVVQASEAEAATDYAVASRHDVFAS
SRPAELEALQQSARDTTVAPGDCGDGDRETGTNAAEDF
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mRNA from alignment at F-serratus_M_contig792:180706..181123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig792.19211.1 ID=mRNA_F-serratus_M_contig792.19211.1|Name=mRNA_F-serratus_M_contig792.19211.1|organism=Fucus serratus male|type=mRNA|length=418bp|location=Sequence derived from alignment at F-serratus_M_contig792:180706..181123+ (Fucus serratus male)
AGGGATGAAGCTCGCGACAGGGACGATCGACGTTTCTAATGAAGGAGCGC
CCAGGGAACCGGAGCAGTCGGTTCCGTCGTCACTAGTCGAGAGCAGCCCG
AACTGGTCTGAGGTCGGCGTGAAGGTGGTCCCGCTCGACACGGATACCTC
GGAAGCTGTTAGCGTCTTCGACAGCGAAGAGACCCAGCGAGAGTGGAGGG
CCAAGCCGCCCCCGCCGTCGAAGCATTCGTGGGTGGTGCAAGCATCGGAG
GCTGAGGCAGCAACCGATTATGCGGTGGCATCGCGTCACGATGTCTTTGC
ATCTTCCCGCCCCGCCGAACTGGAGGCGCTGCAGCAATCGGCGAGAGATA
CGACCGTTGCACCCGGCGACTGTGGCGATGGAGACCGGGAGACGGGGACG
AATGCCGCCGAAGATTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig792:180706..181123+

>mRNA_F-serratus_M_contig792.19211.1 ID=mRNA_F-serratus_M_contig792.19211.1|Name=mRNA_F-serratus_M_contig792.19211.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig792:180706..181123+ (Fucus serratus male)
ATGAAGCTCGCGACAGGGACGATCGACGTTTCTAATGAAGGAGCGCCCAG
GGAACCGGAGCAGTCGGTTCCGTCGTCACTAGTCGAGAGCAGCCCGAACT
GGTCTGAGGTCGGCGTGAAGGTGGTCCCGCTCGACACGGATACCTCGGAA
GCTGTTAGCGTCTTCGACAGCGAAGAGACCCAGCGAGAGTGGAGGGCCAA
GCCGCCCCCGCCGTCGAAGCATTCGTGGGTGGTGCAAGCATCGGAGGCTG
AGGCAGCAACCGATTATGCGGTGGCATCGCGTCACGATGTCTTTGCATCT
TCCCGCCCCGCCGAACTGGAGGCGCTGCAGCAATCGGCGAGAGATACGAC
CGTTGCACCCGGCGACTGTGGCGATGGAGACCGGGAGACGGGGACGAATG
CCGCCGAAGATTTTATGAAGCTCGCGACAGGGACGATCGACGTTTCTAAT
GAAGGAGCGCCCAGGGAACCGGAGCAGTCGGTTCCGTCGTCACTAGTCGA
GAGCAGCCCGAACTGGTCTGAGGTCGGCGTGAAGGTGGTCCCGCTCGACA
CGGATACCTCGGAAGCTGTTAGCGTCTTCGACAGCGAAGAGACCCAGCGA
GAGTGGAGGGCCAAGCCGCCCCCGCCGTCGAAGCATTCGTGGGTGGTGCA
AGCATCGGAGGCTGAGGCAGCAACCGATTATGCGGTGGCATCGCGTCACG
ATGTCTTTGCATCTTCCCGCCCCGCCGAACTGGAGGCGCTGCAGCAATCG
GCGAGAGATACGACCGTTGCACCCGGCGACTGTGGCGATGGAGACCGGGA
GACGGGGACGAATGCCGCCGAAGATTTT
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