mRNA_F-serratus_M_contig790.19183.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig790.19183.1
Unique NamemRNA_F-serratus_M_contig790.19183.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig790contigF-serratus_M_contig790:116542..118427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size497
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932348.7245247-CDS-F-serratus_M_contig790:116541..1169041622932348.7245247-CDS-F-serratus_M_contig790:116541..116904Fucus serratus maleCDSF-serratus_M_contig790 116542..116904 +
1690964265.065364-CDS-F-serratus_M_contig790:116541..1169041690964265.065364-CDS-F-serratus_M_contig790:116541..116904Fucus serratus maleCDSF-serratus_M_contig790 116542..116904 +
1622932348.7373455-CDS-F-serratus_M_contig790:118295..1184271622932348.7373455-CDS-F-serratus_M_contig790:118295..118427Fucus serratus maleCDSF-serratus_M_contig790 118296..118427 +
1690964265.0843606-CDS-F-serratus_M_contig790:118295..1184271690964265.0843606-CDS-F-serratus_M_contig790:118295..118427Fucus serratus maleCDSF-serratus_M_contig790 118296..118427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig790.19183.1prot_F-serratus_M_contig790.19183.1Fucus serratus malepolypeptideF-serratus_M_contig790 116542..118427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig790.19183.1

>prot_F-serratus_M_contig790.19183.1 ID=prot_F-serratus_M_contig790.19183.1|Name=mRNA_F-serratus_M_contig790.19183.1|organism=Fucus serratus male|type=polypeptide|length=165bp
ITQHSIYHWNIYHSSSSSSRKGRLSSNSTMDTTIGALKPEPAEVYQEAAL
SLRYKRITAITAIKLEHAMALLQLGPTHLVDRGLATRRVTEEDLNCYDME
RRQQLPSAPLAANPAGNFVRRKKLDTLQGENDRELDDGWGAYDLNHDSDY
DSDCDSDSECDDDDG
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mRNA from alignment at F-serratus_M_contig790:116542..118427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig790.19183.1 ID=mRNA_F-serratus_M_contig790.19183.1|Name=mRNA_F-serratus_M_contig790.19183.1|organism=Fucus serratus male|type=mRNA|length=1886bp|location=Sequence derived from alignment at F-serratus_M_contig790:116542..118427+ (Fucus serratus male)
ATCACACAACACTCGATTTACCACTGGAACATATATCACAGCAGCAGCAG
CAGCAGCAGGAAAGGAAGATTAAGCAGCAACAGCACTATGGACACCACCA
TAGGAGCCCTGAAGCCCGAGCCCGCAGAGGTATACCAAGAGGCAGCCCTC
AGCTTGCGCTACAAAAGGATTACCGCGATAACGGCCATCAAACTCGAACA
TGCGATGGCATTACTCCAACTCGGGCCTACCCATCTTGTCGATCGGGGCC
TGGCCACCAGACGTGTGACGGAGGAAGACTTGAATTGCTACGATATGGAG
CGGAGACAACAATTGCCCTCAGCCCCGTTGGCAGCCAATCCTGCTGGGAA
TTTCGTCCGTCGGGTGAGTGCCAGTTCGTTGAACCATACGTACGTCTATA
GGTAGCTCAATTCCCCCACTGGTGAAGGCCCAGTGTTATTTGTGCAACAG
GTCCTCTTGTCCCCTTTTAATTATGTACTGTATTCGTCTTTATTACTGAA
TGGTGTACTGTGTTCGTCTGTATTACTGTTTGATGATGTACTGTTTTGTC
TGTTTTTTTGTTTTTGTTTTTTGGTGTCCCTGCATGGCGATTGATGTAAG
TGTACAGTATAACGGTGGGCTTCTCCCCGACATTATACTGTTGACCCAAT
GTTATATGCATCGGGGAACCCATGAAGAGGTTTTTGTATCTGCAGCCTTT
GAGCCCACCTAAACGTTTTGGTTTTTTTCCTCTACCGGGGGCGGATCAGA
AGGTTTAGGTGCCGTTCGCATTTTTCTTTAAACAGTCGTTTTTGAGAATC
TGCTGCTGAAGAGTCATCAGTTGAACCCACGATGATCTTGGCGGTGATCG
TGACGATGATGATCGTGGCGATGATCTTGACGATGACCATCGTGGAGACT
TGCGCCTCTCCGTGTAGAGTTTGTGTTGTCATATTTACTACTGCCCCCAA
CTGAGATTTTTCCTCACAAAAATAAAAATTTAATTAAAAAAAATAAATAC
AGAAATAAAATATCAGATATGAATCCTTCTCGCAATAAAATTTAAGGCAG
GCACCGCAGAAGGAAAGTATATAAATCCTGTGTGACCTTCCTCCTGTGTG
ACCCCGGCTGGTGCGTCCACAAGGCTATAGTAAAAGGAAAGGTTCAGTTC
CAAATGTCAATGTTGCTTCAAATGCTATTTCTAGATCAATTCAGATACAG
CAGACAGTACCAATACTTGTACAGATTACTGTACCAAAAAAAATGGGTTT
CAGTTCGTCGTTGCCTCCATCTCTATCATACTATTAATAATACATCATTA
GAGCTAGAGCCACAGCAGTATACTGGTACTGTATAGACTATATACCCGAC
TATTAGTATATTATTGTACAAGTAGTGCTGAATGCGATTTGCCACGCAAA
TCTAATAAAATCTGACTTGGGTGCTATTAATAATCAATACTTGTATGGGT
AGGGTGTGTTGTTACTGTTATTATTTTTACTATTTAATAATAGATCGATG
GGAGGGGGTTCCCGTCGCTGTCTTGAGACTGAATGGTCAAGTTTCTCATC
GGCGGCGGAAACGTGGTCTCCTCTCTCTCTCTCTCTTCTGTTGTTGGGAA
CATTGTGGGGGGATGGGGGATGAAGAAACACTGCTTTGCTCTGCTTGGAA
CTCGGTTTGAGCCACGAACCCAGTCATGATCCGTGTAAACCCAACGAGTA
TTGTCGTCACTGCCCGTACGTTTTTCTACAACATTTCTCTCTTCTAACCC
ATAGAAGAAGCTGGACACTCTTCAAGGAGAGAATGATCGAGAGCTGGACG
ACGGGTGGGGTGCCTACGATCTCAACCACGACAGCGACTACGACAGCGAC
TGCGACTCCGACAGCGAATGCGACGATGACGATGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig790:116542..118427+

>mRNA_F-serratus_M_contig790.19183.1 ID=mRNA_F-serratus_M_contig790.19183.1|Name=mRNA_F-serratus_M_contig790.19183.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig790:116542..118427+ (Fucus serratus male)
ATCACACAACACTCGATTTACCACTGGAACATATATCACAGCAGCAGCAG
CAGCAGCAGGAAAGGAAGATTAAGCAGCAACAGCACTATGGACACCACCA
TAGGAGCCCTGAAGCCCGAGCCCGCAGAGGTATACCAAGAGGCAGCCCTC
AGCTTGCGCTACAAAAGGATTACCGCGATAACGGCCATCAAACTCGAACA
TGCGATGGCATTACTCCAACTCGGGCCTACCCATCTTGTCGATCGGGGCC
TGGCCACCAGACGTGTGACGGAGGAAGACTTGAATTGCTACGATATGGAG
CGGAGACAACAATTGCCCTCAGCCCCGTTGGCAGCCAATCCTGCTGGGAA
TTTCGTCCGTCGGATCACACAACACTCGATTTACCACTGGAACATATATC
ACAGCAGCAGCAGCAGCAGCAGGAAAGGAAGATTAAGCAGCAACAGCACT
ATGGACACCACCATAGGAGCCCTGAAGCCCGAGCCCGCAGAGGTATACCA
AGAGGCAGCCCTCAGCTTGCGCTACAAAAGGATTACCGCGATAACGGCCA
TCAAACTCGAACATGCGATGGCATTACTCCAACTCGGGCCTACCCATCTT
GTCGATCGGGGCCTGGCCACCAGACGTGTGACGGAGGAAGACTTGAATTG
CTACGATATGGAGCGGAGACAACAATTGCCCTCAGCCCCGTTGGCAGCCA
ATCCTGCTGGGAATTTCGTCCGTCGGAAGAAGCTGGACACTCTTCAAGGA
GAGAATGATCGAGAGCTGGACGACGGGTGGGGTGCCTACGATCTCAACCA
CGACAGCGACTACGACAGCGACTGCGACTCCGACAGCGAATGCGACGATG
ACGATGGCAAGAAGCTGGACACTCTTCAAGGAGAGAATGATCGAGAGCTG
GACGACGGGTGGGGTGCCTACGATCTCAACCACGACAGCGACTACGACAG
CGACTGCGACTCCGACAGCGAATGCGACGATGACGATGGC
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