mRNA_F-serratus_M_contig790.19179.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig790.19179.1
Unique NamemRNA_F-serratus_M_contig790.19179.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.850e-18
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   91 VCSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVIDKLGTPTTTP 315
            VCS G+ GIESSDG+VCC   C QCGGEGCSTV  P+YGA  CC  ++   G+SC+ +  APCV+D + +PT TP
Sbjct:  675 VCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVLDDVLSPTETP 749
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.850e-18
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   91 VCSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVIDKLGTPTTTPTSSP 327
            VCS G+ GIESSDG+VCC   C QCGGEGCSTV  P+YGA  CC +++   G+SC+ +  APCV+D+  TPT  P ++P
Sbjct:  611 VCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDE--TPTPEPNAAP 687
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.270e-11
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   94 CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVID 288
            CSNG++GIESS+G  CC   CG CGG GCS      Y   DCC +EI   G +C +T A+PC ID
Sbjct:  107 CSNGVYGIESSNGKACCALTCGSCGGVGCSGRPGGSY---DCCESEIVEEGEACAATGASPCYID 168
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.550e-11
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   94 CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASD--CCANEIAFFGMSCNSTMAAPCVID 288
            CSNG+ GIES++G VCC + CG CGG  C T AA D G  D  CC ++I  FG SC+    APC+ID
Sbjct:   52 CSNGIEGIESTNGGVCCPALCGLCGGAAC-TKAAVDAGLDDGDCCFSDIIRFGASCSENQMAPCIID 117
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: A0A6H5JQM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.330e-10
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   94 CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVID 288
            CSNG++GIESS+G  CC   CG CGG GCS      Y   DCC +EI   G +C +T A+PC +D
Sbjct:  170 CSNGVYGIESSNGLACCALTCGSCGGVGCSRRPGGSY---DCCESEIVEEGEACAATGASPCYMD 231
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.240e-10
Identity = 39/84 (46.43%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:   94 CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASD--CCANEIAFFGMSCNSTMAAPCVIDKLGTPTTTPTSSPVDSV 339
            CSNG+ GIES++G VCC + CG CGGE C T AA + G  D  CC  +I   G SC+    APC+ID     +   T S  D V
Sbjct:   52 CSNGIEGIESANGDVCCPTACGFCGGEAC-TEAAVNAGLDDGDCCFGDIIVSGASCSENQMAPCIIDDASQESAGDTCSNTDGV 134
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.620e-9
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   73 ILAGDYV-CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVID 288
            +L G ++ C+NG+ G+ES+ G VCC + CG CGG GC    A D    +CC  EI  +G  C+ T  APC +D
Sbjct:  666 MLKGQFMWCTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAAD----ECCTTEIMDYGQPCSVTGTAPCYLD 734
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BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.680e-9
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   31 TLDAGGEATEASSSILAGDYV-CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVID 288
            + D G EA      +L G ++ C+NG+ G+ES+ G VCC + CG CGG GC    A D    +CC  EI  +G  C+ T  APC +D
Sbjct: 1155 SYDYGWEADINDQFMLKGQFMWCTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAAD----ECCTTEIMDYGQPCSVTGTAPCYLD 1237
[Close]
BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 4.930e-8
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   94 CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVIDKLGTPT-TTPTSS 324
            CSNG  GIE S    CCVS+CG CGG GCS+  +   G  DCC   I   G  C++T  APC +D   TP+ +TPT S
Sbjct:   21 CSNGFPGIEKS--GACCVSDCGTCGGSGCSSRESGLTG-DDCCTKNILKQGAPCSATGHAPCFLDGDSTPSKSTPTES 95
[Close]
BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.120e-7
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   94 CSNGLFGIESSDGSVCCVSECGQCGGEGCSTVAAPDYGASDCCANEIA--FFGMSCNSTMAAPCVI 285
            CSNG+ G+  SDG VCC+  CGQCGGEGC  +A  + GASDCC + I     G+ C     APCV+
Sbjct:  292 CSNGIPGV--SDGDVCCLEACGQCGGEGCGAIAGTN-GASDCCPDTIKEESGGVFCGE---APCVM 351
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FRE8_ECTSI2.850e-1857.33EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE3.850e-1855.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHN7_ECTSI5.270e-1152.31von Willebrand A domain containing protein n=2 Tax... [more]
A0A6H5L879_9PHAE9.550e-1153.73WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQM4_9PHAE2.330e-1050.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ60_ECTSI3.240e-1046.43WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRK3_9PHAE1.620e-943.84VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHN6_ECTSI1.680e-941.38Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
D8LRN0_ECTSI4.930e-848.72Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FZM1_ECTSI3.120e-751.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig790contigF-serratus_M_contig790:22805..24030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons3
Model size345
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig790.19179.1prot_F-serratus_M_contig790.19179.1Fucus serratus malepolypeptideF-serratus_M_contig790 22806..24030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932349.4911551-CDS-F-serratus_M_contig790:22805..228611622932349.4911551-CDS-F-serratus_M_contig790:22805..22861Fucus serratus maleCDSF-serratus_M_contig790 22806..22861 -
1690964265.3818548-CDS-F-serratus_M_contig790:22805..228611690964265.3818548-CDS-F-serratus_M_contig790:22805..22861Fucus serratus maleCDSF-serratus_M_contig790 22806..22861 -
1622932349.5198145-CDS-F-serratus_M_contig790:23042..232701622932349.5198145-CDS-F-serratus_M_contig790:23042..23270Fucus serratus maleCDSF-serratus_M_contig790 23043..23270 -
1690964265.3931031-CDS-F-serratus_M_contig790:23042..232701690964265.3931031-CDS-F-serratus_M_contig790:23042..23270Fucus serratus maleCDSF-serratus_M_contig790 23043..23270 -
1622932349.5432394-CDS-F-serratus_M_contig790:23972..240301622932349.5432394-CDS-F-serratus_M_contig790:23972..24030Fucus serratus maleCDSF-serratus_M_contig790 23973..24030 -
1690964265.4021058-CDS-F-serratus_M_contig790:23972..240301690964265.4021058-CDS-F-serratus_M_contig790:23972..24030Fucus serratus maleCDSF-serratus_M_contig790 23973..24030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig790.19179.1

>prot_F-serratus_M_contig790.19179.1 ID=prot_F-serratus_M_contig790.19179.1|Name=mRNA_F-serratus_M_contig790.19179.1|organism=Fucus serratus male|type=polypeptide|length=114bp
AEAYKVECDETLDAGGEATEASSSILAGDYVCSNGLFGIESSDGSVCCVS
ECGQCGGEGCSTVAAPDYGASDCCANEIAFFGMSCNSTMAAPCVIDKLGT
PTTTPTSSPVDSVG
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mRNA from alignment at F-serratus_M_contig790:22805..24030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig790.19179.1 ID=mRNA_F-serratus_M_contig790.19179.1|Name=mRNA_F-serratus_M_contig790.19179.1|organism=Fucus serratus male|type=mRNA|length=1226bp|location=Sequence derived from alignment at F-serratus_M_contig790:22805..24030- (Fucus serratus male)
GCCGAAGCCTACAAGGTAGAATGCGACGAGACTCTGGACGCCGGGGGGGA
AGCAACAGGTGAAGGACATGCGAGCAGTAGCAGCCGAGAAAAGAAAATAT
CTCAGATCAACGCTCGTGCTCGTGTATTGATTGAATTTTTCGATGTTTCT
GACTCGTCTAAGTCTAACGCTTTGTACGATCGTCATGTAGTATTATCGCA
TTCGAAGGCGTTTGTATTTTGGTGTCGTAATACGGTATGGAGGAAGTGCC
TTTCAGTCAAGGATGTGCCCTGGATCGGCGCGATAATAAGATGAGAGGTT
TGGTCTTTGCAGCCTATGATCCCACGTAAACGTTTTGACATTTCCCCCCC
CCCTGACTGGGGGATGCTCAGAAGGTCTAGATGCATTCACATTTTTCTTT
TATACAAAATAGTACCAGATAGTATTCAACTGTTATTATATTGAAGCACA
GTACCTTTCACGAGCCAAAATTCCCGACCCACTTGAACCTAACGTTGCAC
GAGGTCCTCCCGGATTTCGTCCGCGATACAAGTAGCAGTCAAAAGTAACT
GTAGCTAGTAATAGATCATGTGTTGCTGTTGGGGGGGGTGAAAAAAAGCC
TCTTCCAGGGTTTCTCATCTAGTCAGAACGCCTCCACAGAGGTAAATCCG
TCCAAAAGTTTAATCCGGCGCATTCCAAAAGTATAATCCGGCCTCACCCC
CTGGAGGTCCCACTCTCGCCTGCTCCCTTTTCTACTCTTAATACCATTAT
ATTTGTAAAGAGGCGTCATCGTCTATTCTCGCGGGAGATTACGTGTGCAG
TAATGGCCTCTTCGGGATCGAGTCTTCCGATGGTAGTGTCTGTTGCGTGA
GCGAGTGCGGCCAGTGTGGCGGCGAGGGCTGCTCGACGGTCGCCGCCCCG
GACTACGGAGCAAGCGATTGCTGCGCGAACGAGATCGCCTTCTTTGGCAT
GTCATGCAATTCCACCATGGCGGCACCCTGCGTTATTGGTGAGTCCGGAG
GAGACGAGACCTGAGCCCTGGACATGAAGCGCACGCCTTCGATGAAAATA
GCATAATAAATGTGCTGTTACCAGCAGGATGTGCTCTTGCAGATCGCGGT
CCTGATCGATTTCCCGACATTCCCCCCCTCCCCGGCTTCCCTCGTTTTTG
TTGTTGTTGTTGTTTGAAGACAAACTAGGGACTCCGACCACTACTCCAAC
GAGCTCTCCTGTGGATTCTGTTGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig790:22805..24030-

>mRNA_F-serratus_M_contig790.19179.1 ID=mRNA_F-serratus_M_contig790.19179.1|Name=mRNA_F-serratus_M_contig790.19179.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig790:22805..24030- (Fucus serratus male)
GCCGAAGCCTACAAGGTAGAATGCGACGAGACTCTGGACGCCGGGGGGGA
AGCAACAGGCCGAAGCCTACAAGGTAGAATGCGACGAGACTCTGGACGCC
GGGGGGGAAGCAACAGAGGCGTCATCGTCTATTCTCGCGGGAGATTACGT
GTGCAGTAATGGCCTCTTCGGGATCGAGTCTTCCGATGGTAGTGTCTGTT
GCGTGAGCGAGTGCGGCCAGTGTGGCGGCGAGGGCTGCTCGACGGTCGCC
GCCCCGGACTACGGAGCAAGCGATTGCTGCGCGAACGAGATCGCCTTCTT
TGGCATGTCATGCAATTCCACCATGGCGGCACCCTGCGTTATTGAGGCGT
CATCGTCTATTCTCGCGGGAGATTACGTGTGCAGTAATGGCCTCTTCGGG
ATCGAGTCTTCCGATGGTAGTGTCTGTTGCGTGAGCGAGTGCGGCCAGTG
TGGCGGCGAGGGCTGCTCGACGGTCGCCGCCCCGGACTACGGAGCAAGCG
ATTGCTGCGCGAACGAGATCGCCTTCTTTGGCATGTCATGCAATTCCACC
ATGGCGGCACCCTGCGTTATTGACAAACTAGGGACTCCGACCACTACTCC
AACGAGCTCTCCTGTGGATTCTGTTGGGACAAACTAGGGACTCCGACCAC
TACTCCAACGAGCTCTCCTGTGGATTCTGTTGGG
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