mRNA_F-serratus_M_contig790.19178.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig790.19178.1
Unique NamemRNA_F-serratus_M_contig790.19178.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 9.590e-25
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 3
Query:    6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFGATGQACSNGVDGVMSADASVCCASDCEVCGEEACSTFSYLGAGANXXXXXXXXXFGELCESTGEAPCVI 413
            +CSNGIPG+++ N  ACC+A CGTCGG GC+  G   L E++CC SEI DFG  C     APC +       CSNG+ G+ + +A  CC ++C  CG   C+ +   G G +         FGELC  T EAPCV+
Sbjct: 2691 VCSNGIPGIQTGN--ACCLAECGTCGGRGCAEYG-GGLGEDNCCQSEIEDFGELCSVTMEAPCVVD----DVCSNGIPGIQTGNA--CCLAECGTCGGRGCAEYGG-GLGEDNCCQSEIEDFGELCSVTMEAPCVV 2816          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.910e-23
Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 3
Query:    6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFGATGQACSNGVDGVMSADASVCCASDCEVCGEEACSTFSYLGAGANXXXXXXXXXFGELCESTGEAPCVI 413
            MCSNGIPG++S N  ACC+A CG CGG GC+ +G   L E++CC SEI DFG  C     APC +       CSNG+ G+ S +A  CC ++C  CG   C+     G G +         FGELC     APCV+
Sbjct: 1575 MCSNGIPGIQSGN--ACCLAECGGCGGSGCAQLG-GGLGEDNCCQSEIEDFGELCSVKMAAPCVVD----DMCSNGIPGIQSGNA--CCLAECGGCGGSGCAQLGG-GLGEDNCCQSEIEDFGELCSVKMAAPCVV 1700          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.510e-22
Identity = 61/144 (42.36%), Postives = 79/144 (54.86%), Query Frame = 3
Query:    9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLP-DLDEEDCCVSEIADFGMPCDTAGVAPCAIFGAT----GQACSN--GVDGVMSADASVCCASDCEVCGEEACSTFSYLGAGANXXXXXXXXXF--GELCESTGEAPCVI 413
            CSNGI G+ES+NG  CC A CG CGG  C+   +   LD+ DCC S+I  FG  C    +APC I  A+    G  CSN  GV+G+ SA+  VCC S+C +CG   C T + L AG +            G  C  +G APC++
Sbjct:   52 CSNGIEGIESTNGGVCCPALCGLCGGAACTKAAVDAGLDDGDCCFSDIIRFGASCSENQMAPCIIDDASKASAGNTCSNANGVEGISSANGDVCCPSECGLCGGRDC-TQAALAAGLDDGDCCVSDITKEGVKCSDSGAAPCIV 194          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.110e-14
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 3
Query:    9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
            C+NG+PG+ES+ G  CC A CG CGG GC   G      EDCC++EI D+G PC   G APC + G
Sbjct:  220 CTNGVPGMESAGGEVCCPADCGQCGGVGCGEFG------EDCCITEIMDYGQPCSEIGTAPCYLDG 279          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.810e-13
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3
Query:    6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAI 200
            +CS GIPG+ESS+G  CC   C  CGGEGCST+GLP+   E CC  ++   G+ C  +  APC +
Sbjct:  675 VCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVL 739          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.450e-13
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3
Query:    6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAI 200
            +CS GI G+ESS+G  CC   C  CGGEGCST+GLP+   E CC S++   G+ C  +  APC +
Sbjct:  611 VCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVL 675          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.640e-12
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 3
Query:    9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
            C+NG+PG+ES+ G  CC A+CG CGG GC   G  D    +CC +EI D+G PC   G APC + G
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAAD----ECCTTEIMDYGQPCSVTGTAPCYLDG 1238          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.860e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:    9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
            C+NG+ G+ES+ G  CC A+CG CGG GC   G  D    +CC +EI D+G PC   G APC + G
Sbjct:  674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAAD----ECCTTEIMDYGQPCSVTGTAPCYLDG 735          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JQM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-10
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 3
Query:    9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
            CSNG+ G+ESSNGLACC   CG+CGG GCS    P     DCC SEI + G  C   G +PC + G
Sbjct:  170 CSNGVYGIESSNGLACCALTCGSCGGVGCSR--RPG-GSYDCCESEIVEEGEACAATGASPCYMDG 232          
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.770e-9
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    6 MCSNGIPGLE--SSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAI 200
            +CSN + G+E  + NG+ CC A CG CGGEGC ++  P LD  +CC++ + +    C  AG APC I
Sbjct:   43 VCSNSMNGIEGINENGVVCCTAECGQCGGEGCGSV--PGLDNTNCCINGVLNNQELCSVAGAAPCVI 107          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJ68_ECTSI9.590e-2544.12WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE3.910e-2344.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L879_9PHAE6.510e-2242.36WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHN7_ECTSI6.110e-1451.52von Willebrand A domain containing protein n=2 Tax... [more]
D7FRE8_ECTSI4.810e-1349.23EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE6.450e-1349.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHN6_ECTSI1.640e-1250.00Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JRK3_9PHAE1.860e-1148.48VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQM4_9PHAE1.380e-1053.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ5_ECTSI3.770e-944.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig790contigF-serratus_M_contig790:21147..21759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue6.1e-22
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons2
Model size418
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig790.19178.1prot_F-serratus_M_contig790.19178.1Fucus serratus malepolypeptideF-serratus_M_contig790 21147..21754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932349.3893888-CDS-F-serratus_M_contig790:21146..213551622932349.3893888-CDS-F-serratus_M_contig790:21146..21355Fucus serratus maleCDSF-serratus_M_contig790 21147..21355 -
1690964265.3477035-CDS-F-serratus_M_contig790:21146..213551690964265.3477035-CDS-F-serratus_M_contig790:21146..21355Fucus serratus maleCDSF-serratus_M_contig790 21147..21355 -
1622932349.412715-CDS-F-serratus_M_contig790:21552..217541622932349.412715-CDS-F-serratus_M_contig790:21552..21754Fucus serratus maleCDSF-serratus_M_contig790 21553..21754 -
1690964265.3617053-CDS-F-serratus_M_contig790:21552..217541690964265.3617053-CDS-F-serratus_M_contig790:21552..21754Fucus serratus maleCDSF-serratus_M_contig790 21553..21754 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932349.4316015-UTR-F-serratus_M_contig790:21754..217591622932349.4316015-UTR-F-serratus_M_contig790:21754..21759Fucus serratus maleUTRF-serratus_M_contig790 21755..21759 -
1690964265.3714027-UTR-F-serratus_M_contig790:21754..217591690964265.3714027-UTR-F-serratus_M_contig790:21754..21759Fucus serratus maleUTRF-serratus_M_contig790 21755..21759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig790.19178.1

>prot_F-serratus_M_contig790.19178.1 ID=prot_F-serratus_M_contig790.19178.1|Name=mRNA_F-serratus_M_contig790.19178.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIAD
FGMPCDTAGVAPCAIFGATGQACSNGVDGVMSADASVCCASDCEVCGEEA
CSTFSYLGAGANDCCSTDIFVFGELCESTGEAPCVIT
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mRNA from alignment at F-serratus_M_contig790:21147..21759-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig790.19178.1 ID=mRNA_F-serratus_M_contig790.19178.1|Name=mRNA_F-serratus_M_contig790.19178.1|organism=Fucus serratus male|type=mRNA|length=613bp|location=Sequence derived from alignment at F-serratus_M_contig790:21147..21759- (Fucus serratus male)
TATCCATGTGCAGCAATGGGATCCCGGGCTTGGAATCCTCCAACGGTCTG GCGTGCTGTGTAGCGGCGTGCGGCACGTGTGGGGGCGAGGGGTGCTCCAC GATTGGTCTTCCAGACCTCGACGAGGAGGACTGCTGTGTCAGCGAAATCG CAGACTTCGGCATGCCGTGCGACACGGCGGGCGTGGCGCCGTGTGCCATC TTCGGAGGTGGGCGGGGTGATATGAAACGTTTGGCGTCCAGGTTTTTGCG ATGTTACGTGGTTGCCAACATTGACTATTTCTGGGAGGGCGAGCAAGTCA CGGAGCACCCAACAGCGTTACTACGGTAAGCTAGAGCTTTTCGATTCGAC GTCCCGATGACTTACGAGGTCATTTTCCTCTGTTTCCACCCTCGGCGCCG CCAGCCACTGGCCAAGCTTGCAGCAACGGCGTGGACGGTGTGATGTCTGC GGACGCCAGCGTGTGTTGCGCCTCTGATTGTGAAGTGTGTGGCGAGGAGG CCTGCAGCACCTTCAGCTACCTCGGCGCCGGAGCCAACGACTGCTGCTCG ACCGATATCTTCGTTTTCGGCGAGCTGTGCGAGTCCACCGGCGAGGCTCC CTGCGTCATCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig790:21147..21759-

>mRNA_F-serratus_M_contig790.19178.1 ID=mRNA_F-serratus_M_contig790.19178.1|Name=mRNA_F-serratus_M_contig790.19178.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig790:21147..21759- (Fucus serratus male)
ATGTGCAGCAATGGGATCCCGGGCTTGGAATCCTCCAACGGTCTGGCGTG
CTGTGTAGCGGCGTGCGGCACGTGTGGGGGCGAGGGGTGCTCCACGATTG
GTCTTCCAGACCTCGACGAGGAGGACTGCTGTGTCAGCGAAATCGCAGAC
TTCGGCATGCCGTGCGACACGGCGGGCGTGGCGCCGTGTGCCATCTTCGG
AGATGTGCAGCAATGGGATCCCGGGCTTGGAATCCTCCAACGGTCTGGCG
TGCTGTGTAGCGGCGTGCGGCACGTGTGGGGGCGAGGGGTGCTCCACGAT
TGGTCTTCCAGACCTCGACGAGGAGGACTGCTGTGTCAGCGAAATCGCAG
ACTTCGGCATGCCGTGCGACACGGCGGGCGTGGCGCCGTGTGCCATCTTC
GGAGCCACTGGCCAAGCTTGCAGCAACGGCGTGGACGGTGTGATGTCTGC
GGACGCCAGCGTGTGTTGCGCCTCTGATTGTGAAGTGTGTGGCGAGGAGG
CCTGCAGCACCTTCAGCTACCTCGGCGCCGGAGCCAACGACTGCTGCTCG
ACCGATATCTTCGTTTTCGGCGAGCTGTGCGAGTCCACCGGCGAGGCTCC
CTGCGTCATCACCCCACTGGCCAAGCTTGCAGCAACGGCGTGGACGGTGT
GATGTCTGCGGACGCCAGCGTGTGTTGCGCCTCTGATTGTGAAGTGTGTG
GCGAGGAGGCCTGCAGCACCTTCAGCTACCTCGGCGCCGGAGCCAACGAC
TGCTGCTCGACCGATATCTTCGTTTTCGGCGAGCTGTGCGAGTCCACCGG
CGAGGCTCCCTGCGTCATCACC
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