mRNA_F-serratus_M_contig79.19176.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19176.1
Unique NamemRNA_F-serratus_M_contig79.19176.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:911787..912741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size926
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19176.1prot_F-serratus_M_contig79.19176.1Fucus serratus malepolypeptideF-serratus_M_contig79 912007..912513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.687527-UTR-F-serratus_M_contig79:911786..9118371622932343.687527-UTR-F-serratus_M_contig79:911786..911837Fucus serratus maleUTRF-serratus_M_contig79 911787..911837 -
1690964262.8627584-UTR-F-serratus_M_contig79:911786..9118371690964262.8627584-UTR-F-serratus_M_contig79:911786..911837Fucus serratus maleUTRF-serratus_M_contig79 911787..911837 -
1622932343.7038157-UTR-F-serratus_M_contig79:911866..9120061622932343.7038157-UTR-F-serratus_M_contig79:911866..912006Fucus serratus maleUTRF-serratus_M_contig79 911867..912006 -
1690964262.8716683-UTR-F-serratus_M_contig79:911866..9120061690964262.8716683-UTR-F-serratus_M_contig79:911866..912006Fucus serratus maleUTRF-serratus_M_contig79 911867..912006 -
1622932343.7330155-UTR-F-serratus_M_contig79:912513..9127411622932343.7330155-UTR-F-serratus_M_contig79:912513..912741Fucus serratus maleUTRF-serratus_M_contig79 912514..912741 -
1690964262.8891108-UTR-F-serratus_M_contig79:912513..9127411690964262.8891108-UTR-F-serratus_M_contig79:912513..912741Fucus serratus maleUTRF-serratus_M_contig79 912514..912741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.7178502-CDS-F-serratus_M_contig79:912006..9125131622932343.7178502-CDS-F-serratus_M_contig79:912006..912513Fucus serratus maleCDSF-serratus_M_contig79 912007..912513 -
1690964262.8802974-CDS-F-serratus_M_contig79:912006..9125131690964262.8802974-CDS-F-serratus_M_contig79:912006..912513Fucus serratus maleCDSF-serratus_M_contig79 912007..912513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19176.1

>prot_F-serratus_M_contig79.19176.1 ID=prot_F-serratus_M_contig79.19176.1|Name=mRNA_F-serratus_M_contig79.19176.1|organism=Fucus serratus male|type=polypeptide|length=169bp
MRRKIKCTICLGYFGLGVRYTVCQTCIFTQSLVLTIRCKFRTPVLCEPQN
DRGQSLNSYVSRDPSFTRALGNDALAEGLHFTEDQSGRYLTSVPGDGRRA
YSSEPQIILACQKILRIKMPEMRYIPSLFQNSRTYYHPCERVFSSKFADS
SLGRDAKGSLVLNLLTPH*
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mRNA from alignment at F-serratus_M_contig79:911787..912741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19176.1 ID=mRNA_F-serratus_M_contig79.19176.1|Name=mRNA_F-serratus_M_contig79.19176.1|organism=Fucus serratus male|type=mRNA|length=955bp|location=Sequence derived from alignment at F-serratus_M_contig79:911787..912741- (Fucus serratus male)
GTGCCATGAACCAGCAGATATAATTTGTCCTTAGGTGCTGGGCGGAGTAC
GAGCTGTAGGAAGCAGCACCTTCCGCCGCCTGCTCGAGCAGAAAAATTGA
ACGCCTTGAGTCTATGAACGAATGTGCTCTGAGTGCTGCACCCTCCTCCC
GTTGTTAACAAAGTCGTTACAATCACACCGCACTTTGTTTCGGCGACACA
GAAAAATCGTCGAAAATATAACATAAAAATGAGAAGGAAAATAAAATGTA
CAATATGCTTGGGATATTTCGGACTGGGTGTACGGTACACCGTGTGTCAA
ACGTGTATATTTACACAATCTCTAGTCCTCACAATACGCTGCAAATTCCG
AACTCCTGTCCTGTGTGAACCACAAAACGATCGCGGCCAATCTCTAAACT
CATACGTATCCCGAGATCCAAGCTTCACTCGTGCACTGGGGAATGATGCA
TTAGCAGAGGGCCTCCATTTCACGGAGGATCAATCAGGTCGATATTTGAC
TTCTGTCCCTGGTGATGGTAGAAGGGCGTACTCTTCAGAGCCACAAATAA
TACTTGCATGCCAAAAGATCCTCAGAATCAAGATGCCTGAGATGCGGTAC
ATTCCTTCTTTATTCCAGAACTCCAGAACGTATTACCATCCGTGCGAAAG
GGTATTTAGTTCTAAATTTGCTGACTCATCACTGGGTAGAGATGCGAAAG
GATCTTTAGTTCTTAATTTGCTGACTCCTCATTAGGTAGAGATGCACATC
AGCGCGCGTGCGGCACGCACACAAAACTATGACCAAGCGCCAGCCGTGAA
TTGGGACCACGCGGTCAGCTGGGATAGCGCGGGGTCTGGGTTAGCGTTAG
CGATAGCGTTAGCGATAGCGTTAGCGCGTTAGATAGCGTTAGCGATAGCG
TTAGCGATAGCGTTAGGGTCGGGTTGGAGGGTCTGGGGTAGCGTAAGCGA
TAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:911787..912741-

>mRNA_F-serratus_M_contig79.19176.1 ID=mRNA_F-serratus_M_contig79.19176.1|Name=mRNA_F-serratus_M_contig79.19176.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig79:911787..912741- (Fucus serratus male)
ATGAGAAGGAAAATAAAATGTACAATATGCTTGGGATATTTCGGACTGGG
TGTACGGTACACCGTGTGTCAAACGTGTATATTTACACAATCTCTAGTCC
TCACAATACGCTGCAAATTCCGAACTCCTGTCCTGTGTGAACCACAAAAC
GATCGCGGCCAATCTCTAAACTCATACGTATCCCGAGATCCAAGCTTCAC
TCGTGCACTGGGGAATGATGCATTAGCAGAGGGCCTCCATTTCACGGAGG
ATCAATCAGGTCGATATTTGACTTCTGTCCCTGGTGATGGTAGAAGGGCG
TACTCTTCAGAGCCACAAATAATACTTGCATGCCAAAAGATCCTCAGAAT
CAAGATGCCTGAGATGCGGTACATTCCTTCTTTATTCCAGAACTCCAGAA
CGTATTACCATCCGTGCGAAAGGGTATTTAGTTCTAAATTTGCTGACTCA
TCACTGGGTAGAGATGCGAAAGGATCTTTAGTTCTTAATTTGCTGACTCC
TCATTAGATGAGAAGGAAAATAAAATGTACAATATGCTTGGGATATTTCG
GACTGGGTGTACGGTACACCGTGTGTCAAACGTGTATATTTACACAATCT
CTAGTCCTCACAATACGCTGCAAATTCCGAACTCCTGTCCTGTGTGAACC
ACAAAACGATCGCGGCCAATCTCTAAACTCATACGTATCCCGAGATCCAA
GCTTCACTCGTGCACTGGGGAATGATGCATTAGCAGAGGGCCTCCATTTC
ACGGAGGATCAATCAGGTCGATATTTGACTTCTGTCCCTGGTGATGGTAG
AAGGGCGTACTCTTCAGAGCCACAAATAATACTTGCATGCCAAAAGATCC
TCAGAATCAAGATGCCTGAGATGCGGTACATTCCTTCTTTATTCCAGAAC
TCCAGAACGTATTACCATCCGTGCGAAAGGGTATTTAGTTCTAAATTTGC
TGACTCATCACTGGGTAGAGATGCGAAAGGATCTTTAGTTCTTAATTTGC
TGACTCCTCATTAG
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