mRNA_F-serratus_M_contig79.19174.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19174.1
Unique NamemRNA_F-serratus_M_contig79.19174.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:840787..842821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYHYH domain
Ec32 orthologEc-03_002660.3
Exons3
Model size302
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19174.1prot_F-serratus_M_contig79.19174.1Fucus serratus malepolypeptideF-serratus_M_contig79 840888..842818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.4540775-UTR-F-serratus_M_contig79:840786..8408871622932343.4540775-UTR-F-serratus_M_contig79:840786..840887Fucus serratus maleUTRF-serratus_M_contig79 840787..840887 -
1690964262.7660522-UTR-F-serratus_M_contig79:840786..8408871690964262.7660522-UTR-F-serratus_M_contig79:840786..840887Fucus serratus maleUTRF-serratus_M_contig79 840787..840887 -
1622932343.5704775-UTR-F-serratus_M_contig79:842818..8428211622932343.5704775-UTR-F-serratus_M_contig79:842818..842821Fucus serratus maleUTRF-serratus_M_contig79 842819..842821 -
1690964262.814203-UTR-F-serratus_M_contig79:842818..8428211690964262.814203-UTR-F-serratus_M_contig79:842818..842821Fucus serratus maleUTRF-serratus_M_contig79 842819..842821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.5087788-CDS-F-serratus_M_contig79:840887..8409311622932343.5087788-CDS-F-serratus_M_contig79:840887..840931Fucus serratus maleCDSF-serratus_M_contig79 840888..840931 -
1690964262.776608-CDS-F-serratus_M_contig79:840887..8409311690964262.776608-CDS-F-serratus_M_contig79:840887..840931Fucus serratus maleCDSF-serratus_M_contig79 840888..840931 -
1622932343.5286992-CDS-F-serratus_M_contig79:841978..8420471622932343.5286992-CDS-F-serratus_M_contig79:841978..842047Fucus serratus maleCDSF-serratus_M_contig79 841979..842047 -
1690964262.7870362-CDS-F-serratus_M_contig79:841978..8420471690964262.7870362-CDS-F-serratus_M_contig79:841978..842047Fucus serratus maleCDSF-serratus_M_contig79 841979..842047 -
1622932343.5462856-CDS-F-serratus_M_contig79:842733..8428181622932343.5462856-CDS-F-serratus_M_contig79:842733..842818Fucus serratus maleCDSF-serratus_M_contig79 842734..842818 -
1690964262.7997603-CDS-F-serratus_M_contig79:842733..8428181690964262.7997603-CDS-F-serratus_M_contig79:842733..842818Fucus serratus maleCDSF-serratus_M_contig79 842734..842818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19174.1

>prot_F-serratus_M_contig79.19174.1 ID=prot_F-serratus_M_contig79.19174.1|Name=mRNA_F-serratus_M_contig79.19174.1|organism=Fucus serratus male|type=polypeptide|length=66bp
MYELKVLSGDDSEYIDSSTVVNCTMFYEETPTYTVQQINVDDFPNRKTTS
SDGDTKGDTSGAMTA*
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mRNA from alignment at F-serratus_M_contig79:840787..842821-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19174.1 ID=mRNA_F-serratus_M_contig79.19174.1|Name=mRNA_F-serratus_M_contig79.19174.1|organism=Fucus serratus male|type=mRNA|length=2035bp|location=Sequence derived from alignment at F-serratus_M_contig79:840787..842821- (Fucus serratus male)
AGCATGTATGAGCTCAAGGTGCTATCGGGGGACGACAGCGAGTACATCGA
CAGCTCCACCGTGGTCAACTGCACCATGTTCTACGAGGGTGGGAATAAAG
AGAGAGGAAAACAAAACTCGTGACCGAATTATTGGGGCAGAAGGATTTTG
GTCAAATGAAACCACACATCCCTGGTGTGTGTGTGGGGGGGGGGGGAGCC
GTTATGTTTTTTTTGCAAAAATAAAATAGAAATTAGATCCATATCTCTTT
CGCCGCCCAGGATTTTTTCGTTAGAATCCGTCACCGTTTGCTGTGCACTG
GGGTACAGTTACCGAGAGCATAAAATGTATACTTTTTGCAATAATTTATA
AACAATCCCTGGGAGTAGAAGGGGTAAGATTGGAGTGATTCACAAACACA
CACATATATTGCCGCGCGCGATCAACCGCGTGCCGCTTGTAATGCGCAAC
CGAGTCAATGGAACTCCTTCCTGTCGAGGAAACTCTAGGATCATTGTACA
CCACCCACACACAATGCACAACAACAATGGAACAAATATTTTATGCTCGA
TGTTGTTGTTTTTCGTTTTTCGGAACCCCACCATTTTTTATAGTGTTTTT
TAACTATATAGCAGCCAGGTAGTAGTTTGCGGAGTATTGAGTTCTCTTTG
TTTTTGTTTTTTTTGCTACTTTTTTTTTTACATTTTCCCCGCCCCTGCGT
GTTTGTCTGTCTGCCCACCCGACTGTTTCTCCATTTTCTCGGATAAAACT
ACGCTCGTCACGAAAAAACAAAAGAGACCCCCACGTACACCGTGCAGCAG
ATCAACGTCGACGACTTCCCCAACCGCAAAACGACATCATCCGGTGAGCT
CTTCAACTCCTCACACCTCCCCACACACACCCCACCCTCTTCCTATTTAT
AGCTTATGGTAGAGCCAGAGCGATGCCTTTCCCGTCCCTTGGTATGTATG
ATCATCCATTAGATTAAGGATCAACCGGGTAAAGTTGCCAATCCTGCTCG
TGGTCAGCTGAACAGGGAAAATGCATATTTCCCTGTCCTCGTTCGTGTCT
GAGAATTTGGTCTCGCGAGACGGGTTCGGCAATTCCGTCCCGCGCCAGCC
TGGTCACCTCCATACTTAGATCTGGGCGCATTTTTTTCTCGGATTGGTTC
GATCGAACGCCTCCTCCCCAGACCGTGCGGTGGGTGAGATCGAAGCCCCG
ACGACTGCTTTTTCCACCACCACTGGTGAGAATCCGGTGACCTTGTCACA
CGGTGGCTTTTGACAACCTCTCCATATCCCTCCTCTCTCCACAGAAATCG
ATGTAGACGGCGGCCAAACTGGAAACCTCAACATAATATTTACCAATTTC
TAGAAGGATGTGCCTGCATGGTTCTGGGTTGCGTTTCGAGCCCACGGGAC
CAACCCTCAGGACCAACCATGGAAAGTCGGTCGTTAAAGTGACCAGACAC
ACGTTTTCGTCGACGAACTTAATAAAAGATCAAACCCATACATAGCTTTT
CCTGACGACGCTTGAAATAACTGTGCAAATTCAGGTTCTACTAACATTTG
TGTTTCTGGTTGACAAACCTAAAGTGTGGAAACCTAAAAACAAACTTACA
CAGCTTGGATGAGAAATAACTTTTTCTTTGTGTTCAAGCATACGAGCTAA
AACATTTTATCTTTAACTTATAAGTTAACATTTTCTAAGCCTCTTTGCCT
CATCCCACCGCTATAAGAAAAAAACCAAGGACGAACTTCTTAGCCAGTCC
TCAGTTAAAAAAAAAAAAAAAAAAACTTCCTGTTAATAATGAAGCGGTTT
TTCGATGCGCGCCCCTCTCCCCCACCCCTACTATGCGCTTATAAATCGAC
TCACATTCATGCCTGGATACCTCTGGCGACGACATCGCAGACGGAGACAC
GAAAGGAGACACCAGCGGCGCTATGACCGCTTGAGACCATCCTGGGCGCT
CTTTTTCCTCGCCGGTACTCCTGCCGTAGCAGCGATCGGAGGGGCCTTGG
AGTGGATAGCGTAAAAGAAAAATAAATAGAGAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:840787..842821-

>mRNA_F-serratus_M_contig79.19174.1 ID=mRNA_F-serratus_M_contig79.19174.1|Name=mRNA_F-serratus_M_contig79.19174.1|organism=Fucus serratus male|type=CDS|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig79:840787..842821- (Fucus serratus male)
ATGTATGAGCTCAAGGTGCTATCGGGGGACGACAGCGAGTACATCGACAG
CTCCACCGTGGTCAACTGCACCATGTTCTACGAGGATGTATGAGCTCAAG
GTGCTATCGGGGGACGACAGCGAGTACATCGACAGCTCCACCGTGGTCAA
CTGCACCATGTTCTACGAGGAGACCCCCACGTACACCGTGCAGCAGATCA
ACGTCGACGACTTCCCCAACCGCAAAACGACATCATCCGAGACCCCCACG
TACACCGTGCAGCAGATCAACGTCGACGACTTCCCCAACCGCAAAACGAC
ATCATCCGACGGAGACACGAAAGGAGACACCAGCGGCGCTATGACCGCTT
GAACGGAGACACGAAAGGAGACACCAGCGGCGCTATGACCGCTTGA
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