mRNA_F-serratus_M_contig79.19154.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19154.1
Unique NamemRNA_F-serratus_M_contig79.19154.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:177466..179340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.223089-CDS-F-serratus_M_contig79:177465..1776181622932343.223089-CDS-F-serratus_M_contig79:177465..177618Fucus serratus maleCDSF-serratus_M_contig79 177466..177618 +
1690964262.6554585-CDS-F-serratus_M_contig79:177465..1776181690964262.6554585-CDS-F-serratus_M_contig79:177465..177618Fucus serratus maleCDSF-serratus_M_contig79 177466..177618 +
1622932343.2365794-CDS-F-serratus_M_contig79:179093..1793391622932343.2365794-CDS-F-serratus_M_contig79:179093..179339Fucus serratus maleCDSF-serratus_M_contig79 179094..179339 +
1690964262.6660945-CDS-F-serratus_M_contig79:179093..1793391690964262.6660945-CDS-F-serratus_M_contig79:179093..179339Fucus serratus maleCDSF-serratus_M_contig79 179094..179339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19154.1prot_F-serratus_M_contig79.19154.1Fucus serratus malepolypeptideF-serratus_M_contig79 177466..179339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19154.1

>prot_F-serratus_M_contig79.19154.1 ID=prot_F-serratus_M_contig79.19154.1|Name=mRNA_F-serratus_M_contig79.19154.1|organism=Fucus serratus male|type=polypeptide|length=133bp
AYSSGDKGSVVELYRICRSTQADDAGATSVSGARTSTAERRHPYGAVALN
QSTFYNARSLVGPSEGADGGGAATNSGYENPFVGVRGTNASSPKSFPRAA
APRVLAGSSGGSDDDDGMERLLNTIPFSSGGGG
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mRNA from alignment at F-serratus_M_contig79:177466..179340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19154.1 ID=mRNA_F-serratus_M_contig79.19154.1|Name=mRNA_F-serratus_M_contig79.19154.1|organism=Fucus serratus male|type=mRNA|length=1875bp|location=Sequence derived from alignment at F-serratus_M_contig79:177466..179340+ (Fucus serratus male)
GCCTACTCTTCTGGAGACAAGGGCTCCGTAGTAGAGCTGTACCGCATCTG
CCGATCGACGCAGGCCGATGACGCAGGGGCTACCTCGGTGAGCGGCGCGA
GGACTTCGACGGCAGAGCGGCGCCATCCCTACGGAGCTGTTGCGCTCAAC
CAGGTATGCATGTATGTACAAACTGAAGGCCTATGAGACATACAGTATGA
TATACAGTTGTTGTTGTTGTTGTTGCTGTTTGTTTCACATTAACTGACGC
ACTACGAAGAAACCAGCCGTGGTCACTTTCATAGATAGACGGAACCAAAC
CAAATCAAACCGGGAACAATTTTGGAGAAAAGGTAAAGCAGAATGTATAT
TACATATGTATATATTTCTTCCCTCCAACACGCGCACCAGCCTAAAACAG
AAACCCGCAATCTTTCTTTCTTTCTTTCTTTCTTTCTTCCCCCCCGCATT
TTATCCATCTTTTCATTTTTCAAGAGGACAAGAATCGCCAGACTGTCTTT
TTTACGTAAGCTCTTCGTTTGCAAAAAAAAAAGGGGTAAGAAGAAGAAAA
AATATATCGTATGGAGTTATGCTTCCAATCCTTGAAATGAAAAACTTGCA
AACACAGTACAGTAGTTACATGTATGTATTGTATGGTCATAGTCCTCATC
ACATACAGCAAGAGTATGATGGATCAACCGGGTAAGGTTGCTAATCCTGC
TCGTGGTCAGTTGAACGGGGAAAACGAATATTTCCCTGTCCCCGTTCGCG
CCTGGGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCA
GCCTGCTCATCTCCCCTCCACACTCAGGCTGAATATGGTGGTTACTTGTG
TGATTCCTCCCGAGTTCCGCGGCGGCATCTATTTATTTATTTAAACCGCC
TTACGCCATCGGGCCAGTCCCAAGTTTATCGGGTCACGCAATTGCGTACC
GATGGCGTTCACTGCCGACAGTCCGCCGGCACAGGGTCAGTAAACCTCTC
AAGGTAGTTCCAAACGGGTGCTGCCTTGGCAGGTCACCATGGATCAATGA
ATATGCGCCTCTCTTTCCCACACCCACTGTTGGTATGAAATGGGCACGTT
GAAAGTACCGGCGTAATGTTGATTTGTAATTCAGCAAGTCATAAGAGTCA
GATTTGATCCCGACCACGACACTGCACCCTGGTACACTAAGGCTAATGTA
CTTGTACGGAGTTAGGAGGCACGAAAAACACTTTGAAAACTAATCCACGG
AATCTGAATTTCAGCGATCGAAAGAGCGGTTCACTATGTTTCTTGTTTAT
ATATATTTTTTTGTAACGCTTGTTTCCGGCACATACGCGTAGAAAAAAAA
AAAAAAAAAACAGAAAAACAGGTGCCAATCGTTTTCCGCTATTTTGCGTA
ACCCCGAACGACCACAAGCAGTAATCGGGCACTTATGAATTTCATCTCTT
GTCACAAAATGAGGAGACGGAGCACCGAAAAGACCCCCCCCCCCTCCCCT
CCTACCCCTTTTACTCCTTATCTGTCCCCTACCCCCTCTACCCTTTATCT
GTCCCTATCCCTCCTCTACCCTTTTTGATCCCTATCCCCTATCCCATTAT
ACCCCCTTTCTCTTAACAATCCTACCAGTCAACGTTCTATAACGCAAGAA
GCCTCGTCGGCCCCAGCGAAGGTGCCGACGGCGGCGGGGCTGCTACCAAC
AGTGGGTACGAAAATCCTTTTGTGGGCGTACGCGGGACGAATGCGAGCTC
GCCGAAGTCCTTCCCCAGGGCGGCGGCGCCGAGGGTCCTCGCCGGGAGCA
GCGGTGGCAGCGACGACGACGATGGAATGGAGCGGCTCTTGAACACGATA
CCGTTTAGCTCAGGAGGAGGAGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:177466..179340+

>mRNA_F-serratus_M_contig79.19154.1 ID=mRNA_F-serratus_M_contig79.19154.1|Name=mRNA_F-serratus_M_contig79.19154.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig79:177466..179340+ (Fucus serratus male)
GCCTACTCTTCTGGAGACAAGGGCTCCGTAGTAGAGCTGTACCGCATCTG
CCGATCGACGCAGGCCGATGACGCAGGGGCTACCTCGGTGAGCGGCGCGA
GGACTTCGACGGCAGAGCGGCGCCATCCCTACGGAGCTGTTGCGCTCAAC
CAGGCCTACTCTTCTGGAGACAAGGGCTCCGTAGTAGAGCTGTACCGCAT
CTGCCGATCGACGCAGGCCGATGACGCAGGGGCTACCTCGGTGAGCGGCG
CGAGGACTTCGACGGCAGAGCGGCGCCATCCCTACGGAGCTGTTGCGCTC
AACCAGTCAACGTTCTATAACGCAAGAAGCCTCGTCGGCCCCAGCGAAGG
TGCCGACGGCGGCGGGGCTGCTACCAACAGTGGGTACGAAAATCCTTTTG
TGGGCGTACGCGGGACGAATGCGAGCTCGCCGAAGTCCTTCCCCAGGGCG
GCGGCGCCGAGGGTCCTCGCCGGGAGCAGCGGTGGCAGCGACGACGACGA
TGGAATGGAGCGGCTCTTGAACACGATACCGTTTAGCTCAGGAGGAGGAG
GCTCAACGTTCTATAACGCAAGAAGCCTCGTCGGCCCCAGCGAAGGTGCC
GACGGCGGCGGGGCTGCTACCAACAGTGGGTACGAAAATCCTTTTGTGGG
CGTACGCGGGACGAATGCGAGCTCGCCGAAGTCCTTCCCCAGGGCGGCGG
CGCCGAGGGTCCTCGCCGGGAGCAGCGGTGGCAGCGACGACGACGATGGA
ATGGAGCGGCTCTTGAACACGATACCGTTTAGCTCAGGAGGAGGAGGC
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