mRNA_F-serratus_M_contig79.19150.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19150.1
Unique NamemRNA_F-serratus_M_contig79.19150.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:84007..91948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19150.1prot_F-serratus_M_contig79.19150.1Fucus serratus malepolypeptideF-serratus_M_contig79 84048..91948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.140962-UTR-F-serratus_M_contig79:84006..840471622932343.140962-UTR-F-serratus_M_contig79:84006..84047Fucus serratus maleUTRF-serratus_M_contig79 84007..84047 +
1690964262.6233444-UTR-F-serratus_M_contig79:84006..840471690964262.6233444-UTR-F-serratus_M_contig79:84006..84047Fucus serratus maleUTRF-serratus_M_contig79 84007..84047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.1592565-CDS-F-serratus_M_contig79:84047..840871622932343.1592565-CDS-F-serratus_M_contig79:84047..84087Fucus serratus maleCDSF-serratus_M_contig79 84048..84087 +
1690964262.6349688-CDS-F-serratus_M_contig79:84047..840871690964262.6349688-CDS-F-serratus_M_contig79:84047..84087Fucus serratus maleCDSF-serratus_M_contig79 84048..84087 +
1622932343.1779296-CDS-F-serratus_M_contig79:91778..919481622932343.1779296-CDS-F-serratus_M_contig79:91778..91948Fucus serratus maleCDSF-serratus_M_contig79 91779..91948 +
1690964262.6448927-CDS-F-serratus_M_contig79:91778..919481690964262.6448927-CDS-F-serratus_M_contig79:91778..91948Fucus serratus maleCDSF-serratus_M_contig79 91779..91948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19150.1

>prot_F-serratus_M_contig79.19150.1 ID=prot_F-serratus_M_contig79.19150.1|Name=mRNA_F-serratus_M_contig79.19150.1|organism=Fucus serratus male|type=polypeptide|length=70bp
MVNEREKRVDEEEDEEDDALYPIEVGLGCKVAVLRMMSEGTLKEVGFWDE
RIHAPPKGGTAMLTAVHIK*
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mRNA from alignment at F-serratus_M_contig79:84007..91948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19150.1 ID=mRNA_F-serratus_M_contig79.19150.1|Name=mRNA_F-serratus_M_contig79.19150.1|organism=Fucus serratus male|type=mRNA|length=7942bp|location=Sequence derived from alignment at F-serratus_M_contig79:84007..91948+ (Fucus serratus male)
TCTCCTGACCGCAACGCAAAAGGGAGGAATAAGAGAAAAAAATGGTCAAC
GAGAGGGAAAAGCGGGTGGATGAAGAAGAAGGTGGGAGTAATACATCTAT
AGCACTTGAAAAAAAGGTTACACAGAGGTAATATTAACAGTTGACCGTCC
TCTTGATTCAATTTATGCAGTATGATACTTTTTACGGAGTACTGGTATGA
ATTAACACTTTCCGGTTCGAAATTATCGTATGGTCTACGCTGCTTGTTAA
TAAAAAGACGAGGAGGACGATGCCCTGTATCCCATTGAAGTGGGTCTAGG
CTGCAAAGTCGCTGTGTTACGCATGATGAGCGAGGGAACGCTGAAGGAGG
TGGGCTTCTGGGACGAGAGGATATATGCACCTCCCAAGGGTGGAACTGCA
ATGCTAACTGCCATCCATATCAAGTAAGTCGTTATCCCTCCGCGCATAGA
AATGAGAAAGCGCGACTACCGCTGCGCGCAACACAGATCGTTTTATACAT
ATCATATTATTCGTGCAGATCACGTAAAAGTTGGTGTTCCAAATAATGTC
TTCTTATGAGTTGCATGAACACACACATTCTGTTCACTTTGGCTCATTCG
AGTAGCGTTGCGATGACACATTTTCAACTAATTATTCCGCACAGGGATGA
TGCTGCTAGACAAAAGGCCATGCGCGATGCCATGTCTCGTAGAAGTGCAT
CCAGCGCGAAAAAGGAGAGGTCCAAGTCCAAGGTGGGCAGCACGGCCAGA
AACAGCGGCCATTCTCCTGAAATTCGCACGGAGGACGAGAAACCGAAGAC
AAGTTATTCGGACGTTGGAGACAAGTGAGTCGGTATGCCTACGCGCAAAG
CAATGAGAAGCGTGACTCCTGCTGCGCGCAACACGAGCACATATTGTTTC
GTATATAATGGTTTTGACTTTTGTATCGGGTAGCGTTGCGATGACGCGTT
TCCAATTAACTCCGCGCAGGGATCGCGGCAGAAAAAGACAGAGGACTAGT
AAAATTGTTCAAAATGCGAGCGCAAAGAGCGTTAAATCTAAGGCGGGCAG
CACGGCCAGCAACAGCGACAATACTCCAGAAATCCTCCCGATGCACGAGA
CCCCAAACATAAGCTTTGAGGACACTGGGAACGACGATTCCGTCGATGAG
GTGTTTATATGCAGCTAAAACACGATGTTCAGCCACGGTCGGTCAGGGAT
GCATATATAACATCTTGATGAGGTCGGGCGCACAGCCCTGCTGGGGTTCA
ACACATATCTTCGTTATAGTCCGGGAGCTCGCTTAGCGTGCTCCAGAATA
TACCATACACTTATATCCTTACACACAGAGAGAGGGAAACACAAGGGAAG
GTAGTAGTACGTGGGCAGTACAGTAATCTGACAGGGAGATATTGAATCCA
TTCCCATGTAAGTAACACATGAATACTACTGTAACTCCCATACTGAAACT
GTCGAATCGCTCATACTCGTTCATCCCCCTCGATGAAATCAGTTTCCGGT
CCCAAATGCTTAATTTCCCCCTTGGTTCTTGAACCACTGTGTCATATATC
AATTTCAAACAAAGCATCCCCCTTAACTACGGAGTATCTGAGTATCTCCC
TCAATTCAAAGAATCCTATTCAAATTCCAGTACATTATTACCAGAAAGAA
TTAAAAAATATTTTTACATCGCTACCGGGGATTGAACCCTTGATTAGTGA
GCTACGCCTTAATATACCAAACCAAAGCATTTCCGAGATTAAAAAAACTT
GAGTAGTCAAGATGAGATTTGAACCCTGGACGAACTGCAATGTATGTCAA
CGTATAATTTATGGAGTCAGCGAATTCACTGAACAATTTCCCAAAATTAA
CGAATGACTTAAGTCCATTTCTACCGAAAATACTTACGTATTTACTTCTG
TCGTATCGGAATTGATTTCATCTTTTCCGTTTTCTCCTCTTTAGAATACA
CCAGTATTTATTTCTGTGTCGTATCGGAATTAATTTAATATTTTCCGTTT
TCTCCTCTTAAGAATACAAAGTCAGTTACCGTATATTCGAATATTGCAAA
CAACTGACGTATGGCATATGCTTTACCGAAAATGCGAAAATATCAGCTTG
CAACTTCAACTAATGCTGTACCTGACGCACGTTCCTACGCCTTGAACCCA
AATGATAAAACTAGATTCGAAGTGATTTTGTGACAGCGTCAGGTGTCATT
TCAAACTAATGCAGGCAACATTATTCTGACCTAATCCAGGTTCCGCATGA
GGACAATTCATCATGCATTATCAGAAATTTGGAGCAAAAAGGTGATTTAG
TTATCAAGGTATGGCAATCAAACGAAATTGCAGAGGTCAAAAACTGCTAA
GGGGCGTTTTACACCTCAAACAGACGTTTCCAAATTCCAACAAGCAAACT
TTCCAAACTTTGGAAAGTTTGGAAAATCATTTTACACCTATTATGTCAGC
TAGTGGTTGGAAAAGGCAACCCCGCTCAAAAAAGTATGATACGCCTCGGC
ATTTTGAACACCTTTGCCTGTTGAAACCTCAGGACTCATAAACACCACAG
AGATACAACACTACACAAGAACGCGGCTAGTAGATGTCAATAGATCGAAG
AGCAGACCGCGATGATAGAGCTTTTTAAAAAAATCAGAACGCGCCTAGAC
TATACCTTCTGAGCTGTTGTAGGGTCTACAGCAGTACCCTAGTACAACAT
GATTATCAAATTGAAATAAATAAATAAACTCATATTGTCCCTGGTGCCAC
ACGAGTTTTTATTTTTACTCGAGCTTCGAATCTCTACCATTAACAATATG
TGTCTCGTTGGGAATAAGTTCAGTAGTATATCCTGTAAATTTGTATGTAG
ATCAACGCTTTGACATTTTTCCCCTTTAAAAAGGTCTAGGTGCTGTTCTG
ATTTTCTTTAAACAACGTCACTGTATCTATTTTGGCTTCGTGTGAATGTG
TTCGGTGTGGCGCAAAACATGCTTTAAAATACCGATACTTTCTCTTTGAT
ATTACCCTCAGGTCAACAAGTTGATCGCTCCTGTCATAGACGAACAAGAC
GCTGAAGATGATGAAATGAAGCAAAGTTTGTTTGTAAAAAGCAACTATAA
TGATTTTTCAATGCACGCAATGGGGCTAAGTTTGTTATCAAATGCAAAGC
GCCGAAAATGAACTCAACGGGGGTCAACAAACCTCCTTTAAAACGCTAAA
CGACCTTAAGGCTGTAGTCTAGACGGTAGGAGGTTTGCTCGCCTCGAGGC
GTGTTTTTTGCTGGTTACCGTTCGTTTTTTTTTGTTCCTGGACGATGAAC
TCAGACAAAATATCCCTTTAAACACGCGAATAAAAATAAATCTCGCGAGG
ATTGCTGGAAATATTTACCTGGTATAAAATAGTGTGCAGCAGTAGGAGTG
CCCGGGTACAGAGCACGGACTCGCGTAAGGTGCACACACAGCGAAACATC
GCGGAAGGAGAAGAGAGATCCCCGAAGCGTGCCCGCAACAAAAAGCCTAT
GTTCCCACCTGAACATTTTGACATTTTTTCCCCCCTGACTGCGGGATGCT
CAGAAGGTCTAGGCGCGTTCTAGTTTTTCTATAAAAACCCGAAGGTGCCC
CCGGTAAATAGGCTCACCGTAATCTGTTGTTTCTCAAAACATAATAAATA
CTCCGTTTTACTCATTATCCCGGGTTACACAGTACAAAACATGTTGTGTT
CCAAAACATAATTACCGATGATGTACTGCCGTGGAACCTTGTTACAAAAA
TGTTTACAGTCTATAGGCGAGAAAATATGTTGTGCGTCAAAACATAGCCA
CTGCTGTACCGGTACTACTGGAGCAACCTGAAGTAATTGTAGAAAAAACG
TAAGTTATACTAGTATACACTGCGTTGCAAATTTTAATGACAATCTAACC
GCTTTGTACAGCACACGCGGCCATCTTGCTCCTTTCTCAGCCGCTCAGCT
GTCTAACATGTACCTGGTACTGGTATAAAATAGTGTGCAGCAGTAGGAGT
GCCCGGGTACAGAGCACGGACTCGCGTAAGGTGCATCCACAGCAAACCAT
CGCGGTAGGAGAAGAGAGATCCCCGAAGCGTGCCCGCAACAAAAAGCCTA
TGTTCCCACCTGAACGTTTTGACATTTTCCCCCCTGACTGCGGGAAGCTC
AGAAGGTCTAGGCGCGTTCTAGTTTTTCTATAAAAACCCGAAGGTGCCCC
GGTAAATAGGCTCACCGTAGAAAATCTGTTGTTTCTCAAAACATAATAAA
TACTCCGTTTTACTCATGGTCCCGGGTTACACAATACAAAATATGTTGTG
TTTCAAAACATAATTACCGATGATGTACTGCCATGGAACCTGTTCCTGTA
CAAAAATGTTTACAGTCTAATATATAGACGAGAAAATATGTTGTGTGTCA
AAACGTAGCCACTGCTGTACCGGTACTACTGAAGCAACCTGAAGTAGTTG
TAGAAAAAACGTGTAAGTTATACTAGTATACACTGCATTGCAAATTTCTT
TCAAATTTCAATCCCGGACAATCTAACCTCTTTGTACCTATCAATACCGA
CGAGAAGGGAACATGAAAAACACAACACTGGCACAGCCATACGGACAGCC
AAGAGCGGTTTCTAACGCACGTGCGTACAATTTGTCCAGGCGGCAGACAA
TATGCACGCGACGCGGCGATGCAGCTGCTGTGTATTATCGCTGTATGTAC
CTACAATTTGAGGTCATATGATATATAATATGTATACAAACAGCAGACAA
GCCGTACGGCGAGGATAAAAACACCTTCAACTATACACATGTAATATTAA
TAGTATTGTAGTTACATGTACCTGTGACTCCAAACAAACAACAGGTATAT
TTAAAGCTGGAAAAACTGATATTTTACATATGCGGTATTGCAAAATTCAA
GCCCGGCGAGCTGGAGATAACGCATTGCCATACCATAAATGGGTCGAGCC
GGATGTAAGGTATCTTTCTTATTGAGGGCGTAAGAGTCGTTAGCGAGAGG
ATTGCCCCTGTTTGGCGCGTCAAAGATGACCACTTCGGGTCCCGGATGGA
CCAACTGCGGCATAAGACGTTATTTTGACAAAAATGTCGACCGTGCCTGC
TGTACAGCATTTTTGAAGCTCGTTGTTCTTCAGGCACAACGACAACACCT
CAAGGGTTCGATATACCACTGCTGTGGTGGTCCAGGGGACATGTGGCGCA
GGTGAATGCTGTTTTTGGGGGAACCCGTACAGGATGCGGAGCAATTGGGA
GTTTTTTTGTCTACAGGTAACAGTAGCGAATTTTGGTGAGTTTTGTGATC
ACAAAGGTCAATTTTTATCCGGCCATGCCACACCCGCGAAGGAGATAGAA
ACTTGAATCCCCAGAGTATTGTACTAGGTTCAATATTCTGCCTTCACAAT
GCACTATCTCCACGCCGCATAGCTTCAAAAGGCGCTCTACAGGTTGAGTG
CAGGATTCCCTCCAATTTGAGGTTCAGCCGCAAGGGCTGACTTTTCCGAC
GACGAATTTGAGCGACACAGGGCATGTTCAAGCATAAAAACTTCAGCCGA
CGAGCCCTCTGATGTACCTTCACACGCACGCACCTTCAGGGGCCCCGGGC
TGTTGATTTGAGCAAGCACCCTCCCCAGCTGTGTTCGCGCGCGCCGCGAG
CCAGCATGTTTGTGGGCATATGGTGGCTCCCAATTGGTACAGACATTGTA
CCGCATGAAATTGTTTTTATAATAAATTTGAAACAAGTTTGTTGAATGGT
TGAAAAGCGGGGGTCCGGGGATTTTTTCACTAGACTACAGCCTTAAGAGT
GGCAAACTCCGGAAATGGCGTCTCAATCCTCACCAACTCCAGAAGCATTC
CAACGTCGTACGTCTCCGGGAGCAGACGACTCTGAGAACGTGGAGTGGGA
GGCCATACATCCATCCCGGTACCCGCGCCTTCGCCGAAGACCCGCTTAGA
CAACCTGTCAGCGAATCCTTTTGTAAAAATAGGATTGTTGTCCAATTTAC
TTCCAGATCGTCCGTGCGATTTCTTGCAGATATCTATAAGAATAGTGGCG
TACTCCTCTACGAGTGCTGGTATGGCACGCGTTGGCCCGAACGGTGTAAT
CTCCCTCTCGTCGCATGCTCGTTTGTATCGCCGATTACGACCCTTCTCCA
GAGTTGTTTCGCCTTCCTTTCGGTACCCTTCGACGTGGCCCGCATCAACA
TAGTTTCTCTTGGTTACTTTCGCTAGGAACCCGTTTTTGCGCTGCTGAAG
ATACACCATGCCAGTTTTCGCTCCTCTTGAATCAGCGCGCTTTTTGGTGT
TGACGTTGAGTGTCTTCAGACTTTCAGAGAAGTCGTGACTTGGACAATCA
GCAAATATCCCCAGCAGCATCGCTTCAACGATGTAGGCCATGACTTCCTC
CTCGATGAGGAACGACTCAAGTCTCCGATGCGCTCGACGGCCTTTGTCTG
TCTCCGCGCAGTTAGCCTGGATAATGCCCGAGCTGCCTCACCGTCGTGTT
TAGATATAGTAATTCTTTCGCGTTGGTCTCTTTACGCCCCTTGCTATCGA
GCAAGGGGCATAAAGAGAGCAACGCAGAACAAATTACTACATCTGAACAC
GACGGTGAGGCAGCTCGGGCATTATTCAGGTTAACTGCGCAGAGACAGAC
AAAGGCCGTCGAGCGCATCGCAGACTTGGGCGTCACGCGTCGTCTCTGCA
AGGAAATCTCGTTCCTCGTCGAGGAGGAAGTCATGGCCTACATCGTTGAA
GCGATGCTGCTGGGGATATTTGCTGATTGTCCAAGTCACGACTTCTCTGA
AAGTCTGAAGACACTCAACGTCAACACCAAAAAGCGCGCTGATTCATGAA
ACTGGCGTGGTGTATCCTCAGCAGCGCAAAAACGGGTTCCTAGCGAAAGT
AACCACCAAGATAAACTATGTTGATGCGGGCCACGTCGAAGGGTACCGAA
AGGAAGGCGAAACAACTCTGGAGAAGGGTCGTCGTAATCGGCGATACAAA
CGAGCATGCGACGAGCGGGAGATTACACCGGTCTGGGCCAACGCGTGCCA
TACCAGCACTCGTAGAGGAGTACGCCACTATTCTTATAGATATCTGCAAG
AAATCGCACGGACGATCTGGAAGTAAATTGGACTACAATCTTATCTTTAC
AAAAGGATTCGCTGACAGGTTGTCTAAGCGGGTCTTCGGCGAAGGCGCGG
GTACCGGGATGGATGTATGGCCTCCCACTCCACGTCCCCAGAGTCGTCTG
CTCCCGGAGACGTACGACGTTGGAATGCTTCTGGAGTTGGTGAGGATTGA
GACGCCATTTCCGGAGTTTGCCACTCTTAAGGTCGTTTAGCGTTTTAAAT
GGAGGTTTGTTGACCCCCGTTGAGTTCATTTTCGGCGCCTTGCATTTGAT
GACAAACTTAGCCCCATTGCGTGCATTGAAAAATCATTTTATTAATAGTT
GCTTTTTACAAACTCGTAAAGGTCGAGATCCTCGAACGAATCTTGTCTGA
GCGGAAACTCGATAGTCTCCTGACCGCAACGCAAAAGGGAGGAATAAGAG
AAAAAAATGGTCAACGAGAGGGAAAAGCGGGTGGATGAAGAGGAAGGTGG
GAGTAATACATCTATAGCACTTGAAAAAAAGGTTACACAGAGGTAATATT
AACAGTTGACCGTCCTCTTGATTCAATTTATGCAGTATGATACTTTTTAC
GGAGTACTGGTATGAATTAACACTTTCCGGTTCGAAATTATCGTATGGTC
TACGCTGCTTGTTAATAAAAAGACGAGGAGGACGATGCCCTGTATCCCAT
TGAAGTGGGTCTAGGCTGCAAAGTCGCTGTGTTACGCATGATGAGCGAgG
GAACGCTGAAGGAGGTGGGCTTCTGGGACGAGAGGATACATGCACCTCCC
AAGGGTGGAACTGCAATGCTAACTGCCGTCCATATCAAGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:84007..91948+

>mRNA_F-serratus_M_contig79.19150.1 ID=mRNA_F-serratus_M_contig79.19150.1|Name=mRNA_F-serratus_M_contig79.19150.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig79:84007..91948+ (Fucus serratus male)
ATGGTCAACGAGAGGGAAAAGCGGGTGGATGAAGAAGAAGATGGTCAACG
AGAGGGAAAAGCGGGTGGATGAAGAAGAAGACGAGGAGGACGATGCCCTG
TATCCCATTGAAGTGGGTCTAGGCTGCAAAGTCGCTGTGTTACGCATGAT
GAGCGAgGGAACGCTGAAGGAGGTGGGCTTCTGGGACGAGAGGATACATG
CACCTCCCAAGGGTGGAACTGCAATGCTAACTGCCGTCCATATCAAGTAA
ACGAGGAGGACGATGCCCTGTATCCCATTGAAGTGGGTCTAGGCTGCAAA
GTCGCTGTGTTACGCATGATGAGCGAgGGAACGCTGAAGGAGGTGGGCTT
CTGGGACGAGAGGATACATGCACCTCCCAAGGGTGGAACTGCAATGCTAA
CTGCCGTCCATATCAAGTAA
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