mRNA_F-serratus_M_contig7895.19149.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7895.19149.1
Unique NamemRNA_F-serratus_M_contig7895.19149.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7895.19149.1 vs. uniprot
Match: A0A6H5JI08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI08_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.660e-55
Identity = 128/291 (43.99%), Postives = 177/291 (60.82%), Query Frame = 1 
Query:    1 FGHLDSLVDDIKK---ELDRLESHLRQLRLRAESDATEASQVKSELEAAQAERMSLQKRIGLLTRKNEDLATENAKLLEEKCDFQRSMANNEAKLKQDEDDLRRAQHEFVQDLEKANLAYSRNRAVMNTLLGRKGVGCAEFPSPDEVDNMKQAAAKTEAILSKGH--QGERRLMGANPYGPQRPSRKVRNKTSAGASIGQSKSQRRGXXXXXXXKGRDYDMDNHRRQQQ--------RISELEHEGPKPNVLAQVAHLEETCSRQAEYIGQLEEYANSVEAANAQLMQQQQ 834
            FGHL SLVDDI K   E  +LES LRQ R+RA+++  +ASQ+K ELE A A+R+SLQ+ IGLL+R+NEDL  E AKL E+  DFQRSM NNEAKLK++E DL++AQ  FV+ LEK+N +YSR+RAVMNTL+GR G+GCAE PSP+E++  +  AA+   + ++ H  + E + +        R  + +R +  +    G       G        G++                    I+ LE+E         +A L +TC+RQ EY+ QLEEYANSVEA N  L ++Q+
Sbjct:    4 FGHLGSLVDDINKKDGERLKLESQLRQQRMRADAEEAKASQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKKAQRGFVESLEKSNASYSRHRAVMNTLVGRNGMGCAEIPSPEELEAFRGLAARAAELQARLHAVEAESQALKQEAATSSRKQQVLRREIDSFKRNGAGGKSSAGSPRVDKGSGKNKQQTXXXXXXXXXXXXXXXHITALENE---------IARLNDTCNRQMEYMSQLEEYANSVEAINEDLRKEQE 285
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BLAST of mRNA_F-serratus_M_contig7895.19149.1 vs. uniprot
Match: D8LN29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN29_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.440e-54
Identity = 124/276 (44.93%), Postives = 163/276 (59.06%), Query Frame = 1 
Query:    1 FGHLDSLVDDIKK---ELDRLESHLRQLRLRAESDATEASQVKSELEAAQAERMSLQKRIGLLTRKNEDLATENAKLLEEKCDFQRSMANNEAKLKQDEDDLRRAQHEFVQDLEKANLAYSRNRAVMNTLLGRKGVGCAEFPSPDEVDNMKQAAAKTEAILSKGHQGERRLMGANPYGPQRPSRKVRNKTSAGASIGQSKSQRRGXXXXXXXKGRDYDMDNHRRQQQRISELEHEGPKPNVLAQVAHLEETCSRQAEYIGQLEEYANSVEAANAQL 819
            FGHL SLVDDI K   E  +LES LRQ R+RA+++  + SQ+K ELE A A+R+SLQ+ IGLL+R+NEDL  E AKL E+  DFQRSM NNEAKLK++E DL+ AQ  FV  LEK+N +YSR+RAVMN L+GR GVGCAE PSP+E++  +  AA+   + ++ H  E                    K  A AS                             ++Q++ + E +  K      +A L++TC+RQ EY+ QLEEYANSVEA N  L
Sbjct:    4 FGHLGSLVDDINKRDGERLKLESQLRQQRMRADAEEAKVSQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKEAQRGFVDSLEKSNASYSRHRAVMNNLVGRNGVGCAEIPSPEELEAFRGLAARAAELQARLHAVEAESQAL--------------KQEAAASS----------------------------RKQKVLQREIDSFK------IARLDDTCNRQMEYMSQLEEYANSVEAINEDL 231
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7895.19149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI08_9PHAE1.660e-5543.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN29_ECTSI1.440e-5444.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7895contigF-serratus_M_contig7895:5640..8595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size840
Cds size840
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932342.967902-CDS-F-serratus_M_contig7895:5639..56901622932342.967902-CDS-F-serratus_M_contig7895:5639..5690Fucus serratus maleCDSF-serratus_M_contig7895 5640..5690 +
1690964262.5249183-CDS-F-serratus_M_contig7895:5639..56901690964262.5249183-CDS-F-serratus_M_contig7895:5639..5690Fucus serratus maleCDSF-serratus_M_contig7895 5640..5690 +
1622932342.9868321-CDS-F-serratus_M_contig7895:6189..63521622932342.9868321-CDS-F-serratus_M_contig7895:6189..6352Fucus serratus maleCDSF-serratus_M_contig7895 6190..6352 +
1690964262.5434992-CDS-F-serratus_M_contig7895:6189..63521690964262.5434992-CDS-F-serratus_M_contig7895:6189..6352Fucus serratus maleCDSF-serratus_M_contig7895 6190..6352 +
1622932343.0029502-CDS-F-serratus_M_contig7895:6527..66751622932343.0029502-CDS-F-serratus_M_contig7895:6527..6675Fucus serratus maleCDSF-serratus_M_contig7895 6528..6675 +
1690964262.5616543-CDS-F-serratus_M_contig7895:6527..66751690964262.5616543-CDS-F-serratus_M_contig7895:6527..6675Fucus serratus maleCDSF-serratus_M_contig7895 6528..6675 +
1622932343.0161958-CDS-F-serratus_M_contig7895:6983..70971622932343.0161958-CDS-F-serratus_M_contig7895:6983..7097Fucus serratus maleCDSF-serratus_M_contig7895 6984..7097 +
1690964262.574246-CDS-F-serratus_M_contig7895:6983..70971690964262.574246-CDS-F-serratus_M_contig7895:6983..7097Fucus serratus maleCDSF-serratus_M_contig7895 6984..7097 +
1622932343.0697157-CDS-F-serratus_M_contig7895:7346..74131622932343.0697157-CDS-F-serratus_M_contig7895:7346..7413Fucus serratus maleCDSF-serratus_M_contig7895 7347..7413 +
1690964262.5845983-CDS-F-serratus_M_contig7895:7346..74131690964262.5845983-CDS-F-serratus_M_contig7895:7346..7413Fucus serratus maleCDSF-serratus_M_contig7895 7347..7413 +
1622932343.0843675-CDS-F-serratus_M_contig7895:8057..82111622932343.0843675-CDS-F-serratus_M_contig7895:8057..8211Fucus serratus maleCDSF-serratus_M_contig7895 8058..8211 +
1690964262.5987-CDS-F-serratus_M_contig7895:8057..82111690964262.5987-CDS-F-serratus_M_contig7895:8057..8211Fucus serratus maleCDSF-serratus_M_contig7895 8058..8211 +
1622932343.1015089-CDS-F-serratus_M_contig7895:8452..85951622932343.1015089-CDS-F-serratus_M_contig7895:8452..8595Fucus serratus maleCDSF-serratus_M_contig7895 8453..8595 +
1690964262.6122103-CDS-F-serratus_M_contig7895:8452..85951690964262.6122103-CDS-F-serratus_M_contig7895:8452..8595Fucus serratus maleCDSF-serratus_M_contig7895 8453..8595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7895.19149.1prot_F-serratus_M_contig7895.19149.1Fucus serratus malepolypeptideF-serratus_M_contig7895 5640..8595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7895.19149.1

>prot_F-serratus_M_contig7895.19149.1 ID=prot_F-serratus_M_contig7895.19149.1|Name=mRNA_F-serratus_M_contig7895.19149.1|organism=Fucus serratus male|type=polypeptide|length=280bp
FGHLDSLVDDIKKELDRLESHLRQLRLRAESDATEASQVKSELEAAQAER
MSLQKRIGLLTRKNEDLATENAKLLEEKCDFQRSMANNEAKLKQDEDDLR
RAQHEFVQDLEKANLAYSRNRAVMNTLLGRKGVGCAEFPSPDEVDNMKQA
AAKTEAILSKGHQGERRLMGANPYGPQRPSRKVRNKTSAGASIGQSKSQR
RGDGGGDGGKGRDYDMDNHRRQQQRISELEHEGPKPNVLAQVAHLEETCS
RQAEYIGQLEEYANSVEAANAQLMQQQQV*
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mRNA from alignment at F-serratus_M_contig7895:5640..8595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7895.19149.1 ID=mRNA_F-serratus_M_contig7895.19149.1|Name=mRNA_F-serratus_M_contig7895.19149.1|organism=Fucus serratus male|type=mRNA|length=2956bp|location=Sequence derived from alignment at F-serratus_M_contig7895:5640..8595+ (Fucus serratus male)
TTCGGGCATCTTGATTCCCTCGTGGACGACATCAAGAAAGAGCTTGACCG
TGTCAAGGCAAGCAAAGAACGCTGCGGTCGATGTTTCCCAAGGGAAGGGC
GCCTTGCCAATGTCAGCAGGCGTGGTATCGCAAGACATAAACGATCTTCA
CAAATCTATATGTGAAGTGGTGGGGCAAGCGCGACGTGTTCCTCGTATTC
ATATCGGCACTCTGTGTGTGTATAGCTAGAGGAATGGGCGTCTACACCGA
CTTCAATAGTCATGTTTCCTAACGGCGATTCTTTGGCTTCTTCATATGGC
TCATGCCAATGGCTTGATCTTTCCTGCGGAGCGACTCGCTCTTAGTCAAA
GTTGAAACATTGTGGTGATCTCATTGACATCCCCTGTCTCTTTCGCCCGT
TATAATCACACAGGCCTCGGTGGACATAGGCTCGATTTCTCCCGCTGTTT
CTGTCTGGGGGTTCTCTAACCTAGCCTCCCTCAGTTCGTCTTCTACCCCC
CCCCCCATCCACTAATGGGTATACTCTTCTATTGTCCGCGTTAACTTTAG
CTCGAGTCACATCTGCGACAGCTTCGCCTGAGGGCCGAGTCAGATGCCAC
GGAGGCCTCTCAAGTCAAGTCGGAGCTCGAAGCGGCACAAGCCGAGCGTA
TGTCACTACAAAAACGGATTGGTCTTCTCACACGGAAGAACGAAGATCTT
GCTACGGAGAACGGTCAGCTCTGTTATAATGTGGCGTAAAATATATGAAG
CCCGCATCATACATCATACTGTATGTGTAGGCCACCCTTCAAGTTACCGC
TTGAACAGCTCTTTGGATGCGGACCTTTCCTGAGATGTGCTGATATCATT
CGTTGTTCTGAACTGATCACCCCCCCTTTTCTATTCAGCCAAGCTCCTTG
AAGAGAAATGCGACTTTCAACGATCGATGGCCAACAACGAGGCCAAGCTC
AAGCAGGACGAGGACGACTTGCGCCGGGCGCAGCACGAATTCGTCCAAGA
TCTGGAAAAGGCCAACCTTGCGTACTCGCGCAACCGGTGGGTTTTTTAAC
CTCCTGTAGGCTTGAGGGGTACGACTTCATCTCTGACGTGACATCGTGCA
GCTCTAAGTGCTACTGACGCGGCTCCCTGAAGATGCTGTTGTTGGATGCA
TCACTTGGCAGAGATAGACGATTTTAATTCAATTTACTTTTTGCACTGAT
GTGGGCATCTTTGTGTGCCTGAAGGTATCGCCCGATGGGGTGTAGGGCTC
CGTAAAATGGAAGATGCACTCATCGTCGTGCATCTCCCTTCGGCCAGGCC
CAGGGATTAAGTTAAAAACGTCATTCAGCGTATTCGTCTATCAGGGCTGT
CATGAATACGCTTCTCGGTCGGAAAGGGGTCGGCTGTGCCGAGTTTCCGT
CCCCAGATGAGGTGGATAATATGAAGCAGGCTGCGGCAAAGACGGAGGCG
ATTCTCAGGTAGAAATTTGTTGGCTCGAACTCCATGTCCCTCTCAACAGG
GTAGCCTTTGGGCGCCCGATGTAGATCATCTGACCCCCAAAATCTCTAAA
GGGCGCGATTGAACGTCCAGGTCGCGCTTCGTATCAGGAGTAATATTCAT
ATTATGAGACAAATTCATCATCACTCGAAAACTTGCCTTTTCGCCAGGCC
CACACTGATGTCTCTATCTCTGTAAGAACTTTAATTATCAGGCAATTTTC
TAGAGAGTAAGGGGCATCAGGGAGAAAGAAGACTCATGGGCGCTAATCCG
TATGGGCCTCAAAGACCAAGTCGTGTCCGAACGTAGCTTCGTGTTGATGC
CTTTGTGTCGGCAGGGCAGCGGAGTTGGAGGCCCGGCCCTGAGCTGCAGG
ACAGTAAGCTAGAAAAGAGTTTGTTTCTCTTCAGGTGATCTGTTTGTTTC
TCTTCAGGTGATCTGCTTGTTTCTCTTCAGGTGATCTGTTTGTTTCTCTT
CAGATCTGCCGATCTGCTTGTTTCTCTTCAGGTGAGTGCTCTTCAGGTGA
AAGCTTGTTTCTCTTCAGGTGCCCTTTAGAAGGTGAGTTTCTCTTCAGTT
TGTTTCTCTTCAGGTGATCTGCTTTCAGGTGATCTGCTTGAAAAAAACAT
AACATAACCTAACCGGGGGTTACAAAACTGCAGCACAGATATTTCAGTAA
GTTTCTAAACCTTTTTGACTTAGGGCACATACTGCTATGTTTTATCGAGA
CTCGAAACGTCGCCAAAATCTGATGGTGTTAGTTATGCCAAACAATCGTC
TCCTTGCCCAAAATATAGCCATTCGGGGGTAATCAAGCCGCCGGCAATCA
CATAGCATGCAATTTAGTGATTGACGATAGCACACGCGATTGATACCAGA
CTATTTTCTGTCATATCCTTGGAGTCTACAGCCCCATAGACATGCACTAA
TGCTCATGATCACAGGAGAAGGTACGGAACAAAACGAGCGCTGGCGCCAG
TATCGGCCAGTCCAAAAGTCAGAGGAGAGGCGACGGAGGCGGTGATGGTG
GCAAGGGTAGGGACTATGACATGGACAATCACAGACGCCAGCAGCAACGA
ATTTCCGAGCTAGAGCATGAGGGTTTGTTAAAACTAAACATTTTTCTTGT
GTAGTACTTTATAAACTGAACCCACGCTGTGCGTCGATACCTTTGGAGTT
ATGGCATGGCAACAACAGGAAAACTTTGATGACGCAGGCCAGAATCCATC
ATCAACCCAAGGCTCGCCAGGAAACTCGACAGGCCGGTTTTGGCCGTGAT
ATATGACCGTGGCTAGAAGAATAGTCATAACCTCCAGGGAAATAGCAAAT
CGTCGGTTATCAGGCCCAAAACCGAACGTTCTCGCTCAGGTTGCGCATCT
AGAGGAAACGTGCAGCAGGCAGGCCGAGTACATCGGTCAACTCGAAGAGT
ACGCCAATAGCGTCGAGGCTGCCAATGCACAGCTGATGCAACAGCAACAG
GTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7895:5640..8595+

>mRNA_F-serratus_M_contig7895.19149.1 ID=mRNA_F-serratus_M_contig7895.19149.1|Name=mRNA_F-serratus_M_contig7895.19149.1|organism=Fucus serratus male|type=CDS|length=1680bp|location=Sequence derived from alignment at F-serratus_M_contig7895:5640..8595+ (Fucus serratus male)
TTCGGGCATCTTGATTCCCTCGTGGACGACATCAAGAAAGAGCTTGACCG
TTTCGGGCATCTTGATTCCCTCGTGGACGACATCAAGAAAGAGCTTGACC
GTCTCGAGTCACATCTGCGACAGCTTCGCCTGAGGGCCGAGTCAGATGCC
ACGGAGGCCTCTCAAGTCAAGTCGGAGCTCGAAGCGGCACAAGCCGAGCG
TATGTCACTACAAAAACGGATTGGTCTTCTCACACGGAAGAACGAAGATC
TTGCTACGGAGAACGCTCGAGTCACATCTGCGACAGCTTCGCCTGAGGGC
CGAGTCAGATGCCACGGAGGCCTCTCAAGTCAAGTCGGAGCTCGAAGCGG
CACAAGCCGAGCGTATGTCACTACAAAAACGGATTGGTCTTCTCACACGG
AAGAACGAAGATCTTGCTACGGAGAACGCCAAGCTCCTTGAAGAGAAATG
CGACTTTCAACGATCGATGGCCAACAACGAGGCCAAGCTCAAGCAGGACG
AGGACGACTTGCGCCGGGCGCAGCACGAATTCGTCCAAGATCTGGAAAAG
GCCAACCTTGCGTACTCGCGCAACCGCCAAGCTCCTTGAAGAGAAATGCG
ACTTTCAACGATCGATGGCCAACAACGAGGCCAAGCTCAAGCAGGACGAG
GACGACTTGCGCCGGGCGCAGCACGAATTCGTCCAAGATCTGGAAAAGGC
CAACCTTGCGTACTCGCGCAACCGGGCTGTCATGAATACGCTTCTCGGTC
GGAAAGGGGTCGGCTGTGCCGAGTTTCCGTCCCCAGATGAGGTGGATAAT
ATGAAGCAGGCTGCGGCAAAGACGGAGGCGATTCTCAGGGCTGTCATGAA
TACGCTTCTCGGTCGGAAAGGGGTCGGCTGTGCCGAGTTTCCGTCCCCAG
ATGAGGTGGATAATATGAAGCAGGCTGCGGCAAAGACGGAGGCGATTCTC
AGTAAGGGGCATCAGGGAGAAAGAAGACTCATGGGCGCTAATCCGTATGG
GCCTCAAAGACCAAGTCGTTAAGGGGCATCAGGGAGAAAGAAGACTCATG
GGCGCTAATCCGTATGGGCCTCAAAGACCAAGTCGTAAGGTACGGAACAA
AACGAGCGCTGGCGCCAGTATCGGCCAGTCCAAAAGTCAGAGGAGAGGCG
ACGGAGGCGGTGATGGTGGCAAGGGTAGGGACTATGACATGGACAATCAC
AGACGCCAGCAGCAACGAATTTCCGAGCTAGAGCATGAGGAAGGTACGGA
ACAAAACGAGCGCTGGCGCCAGTATCGGCCAGTCCAAAAGTCAGAGGAGA
GGCGACGGAGGCGGTGATGGTGGCAAGGGTAGGGACTATGACATGGACAA
TCACAGACGCCAGCAGCAACGAATTTCCGAGCTAGAGCATGAGGGCCCAA
AACCGAACGTTCTCGCTCAGGTTGCGCATCTAGAGGAAACGTGCAGCAGG
CAGGCCGAGTACATCGGTCAACTCGAAGAGTACGCCAATAGCGTCGAGGC
TGCCAATGCACAGCTGATGCAACAGCAACAGGTGTGAGCCCAAAACCGAA
CGTTCTCGCTCAGGTTGCGCATCTAGAGGAAACGTGCAGCAGGCAGGCCG
AGTACATCGGTCAACTCGAAGAGTACGCCAATAGCGTCGAGGCTGCCAAT
GCACAGCTGATGCAACAGCAACAGGTGTGA
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