mRNA_F-serratus_M_contig7891.19148.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7891.19148.1
Unique NamemRNA_F-serratus_M_contig7891.19148.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7891.19148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7891contigF-serratus_M_contig7891:6737..6973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size138
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7891.19148.1prot_F-serratus_M_contig7891.19148.1Fucus serratus malepolypeptideF-serratus_M_contig7891 6737..6946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932342.875479-CDS-F-serratus_M_contig7891:6736..68231622932342.875479-CDS-F-serratus_M_contig7891:6736..6823Fucus serratus maleCDSF-serratus_M_contig7891 6737..6823 +
1690964262.4817307-CDS-F-serratus_M_contig7891:6736..68231690964262.4817307-CDS-F-serratus_M_contig7891:6736..6823Fucus serratus maleCDSF-serratus_M_contig7891 6737..6823 +
1622932342.894562-CDS-F-serratus_M_contig7891:6895..69461622932342.894562-CDS-F-serratus_M_contig7891:6895..6946Fucus serratus maleCDSF-serratus_M_contig7891 6896..6946 +
1690964262.497288-CDS-F-serratus_M_contig7891:6895..69461690964262.497288-CDS-F-serratus_M_contig7891:6895..6946Fucus serratus maleCDSF-serratus_M_contig7891 6896..6946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932342.912637-UTR-F-serratus_M_contig7891:6946..69731622932342.912637-UTR-F-serratus_M_contig7891:6946..6973Fucus serratus maleUTRF-serratus_M_contig7891 6947..6973 +
1690964262.5096164-UTR-F-serratus_M_contig7891:6946..69731690964262.5096164-UTR-F-serratus_M_contig7891:6946..6973Fucus serratus maleUTRF-serratus_M_contig7891 6947..6973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7891.19148.1

>prot_F-serratus_M_contig7891.19148.1 ID=prot_F-serratus_M_contig7891.19148.1|Name=mRNA_F-serratus_M_contig7891.19148.1|organism=Fucus serratus male|type=polypeptide|length=46bp
LPTLVSRNRHASGNAYCCSCVLRDVCWNPFSPNSRSPPLCPRFVK*
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mRNA from alignment at F-serratus_M_contig7891:6737..6973+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7891.19148.1 ID=mRNA_F-serratus_M_contig7891.19148.1|Name=mRNA_F-serratus_M_contig7891.19148.1|organism=Fucus serratus male|type=mRNA|length=237bp|location=Sequence derived from alignment at F-serratus_M_contig7891:6737..6973+ (Fucus serratus male)
TTGCCGACGCTGGTCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTG
CTGTAGTTGCGTCTTGCGTGATGTTTGCTGGAACCCAGTTTTCCCCGAAT
TTTTGGTCTTCTCGCTCTCCGCAGCAACTCGTATTGCTGTGGTATCCGCT
TGTACCCAGTTTTCCCCGAATTCTCGCTCTCCGCCGTTGTGTCCTCGTTT
TGTAAAATAAAATTTTCCCCCTCATCCATGCATGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7891:6737..6973+

>mRNA_F-serratus_M_contig7891.19148.1 ID=mRNA_F-serratus_M_contig7891.19148.1|Name=mRNA_F-serratus_M_contig7891.19148.1|organism=Fucus serratus male|type=CDS|length=276bp|location=Sequence derived from alignment at F-serratus_M_contig7891:6737..6973+ (Fucus serratus male)
TTGCCGACGCTGGTCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTG
CTGTAGTTGCGTCTTGCGTGATGTTTGCTGGAACCCATTGCCGACGCTGG
TCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTGCTGTAGTTGCGTC
TTGCGTGATGTTTGCTGGAACCCATTTTCCCCGAATTCTCGCTCTCCGCC
GTTGTGTCCTCGTTTTGTAAAATAATTTTCCCCGAATTCTCGCTCTCCGC
CGTTGTGTCCTCGTTTTGTAAAATAA
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