mRNA_F-serratus_M_contig7881.19141.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7881.19141.1
Unique NamemRNA_F-serratus_M_contig7881.19141.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7881.19141.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.660e-17
Identity = 55/106 (51.89%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:    6 GRKMVLLAGLAEVMWRMPRASMGPRDGGTAILALRDL-ATDREREGNKSRR--FCYYFATFP-GKDAPGPSPGPSLARVLRALVYCQLRRGLFREVLETTRVVLGE 311
            G   VL   LAEVMWR+ RASM  RD  TAILAL  L A +    G  S R    YYFA+F  G  A     GP  ARVLRAL Y Q++RGL+R+ LET   VLG+
Sbjct:  642 GALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATAGGEASPREGLAYYFASFAKGGGARASRRGPGRARVLRALAYSQIQRGLYRDALETVGTVLGD 747
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BLAST of mRNA_F-serratus_M_contig7881.19141.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.150e-17
Identity = 55/110 (50.00%), Postives = 69/110 (62.73%), Query Frame = 3 
Query:    6 GRKMVLLAGLAEVMWRMPRASMGPRDGGTAILALRDL-ATDREREGNKSRR--FCYYFATFPGKD--APGPSPGPSLARVLRALVYCQLRRGLFREVLETTRVVLGERNS 320
            G  +VL    AEVMWR+ RASM  +D  TAILAL  L A +   +G  S R    YYFA+F  KD  A     GP  ARVLRAL + Q++RGL+R+ LET R+VLG+ +S
Sbjct:  618 GALVVLPVAPAEVMWRVARASMAAKDWPTAILALEGLVAAEATADGVASSREGLAYYFASF-AKDGGARASRRGPGRARVLRALAFSQIQRGLYRDALETVRMVLGDGSS 726
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7881.19141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1V4_9PHAE1.660e-1751.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU3_ECTSI4.150e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7881contigF-serratus_M_contig7881:10881..12062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932340.972753-CDS-F-serratus_M_contig7881:10880..110981622932340.972753-CDS-F-serratus_M_contig7881:10880..11098Fucus serratus maleCDSF-serratus_M_contig7881 10881..11098 -
1690964261.5050225-CDS-F-serratus_M_contig7881:10880..110981690964261.5050225-CDS-F-serratus_M_contig7881:10880..11098Fucus serratus maleCDSF-serratus_M_contig7881 10881..11098 -
1622932340.9885979-CDS-F-serratus_M_contig7881:11917..120621622932340.9885979-CDS-F-serratus_M_contig7881:11917..12062Fucus serratus maleCDSF-serratus_M_contig7881 11918..12062 -
1690964261.5171504-CDS-F-serratus_M_contig7881:11917..120621690964261.5171504-CDS-F-serratus_M_contig7881:11917..12062Fucus serratus maleCDSF-serratus_M_contig7881 11918..12062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7881.19141.1prot_F-serratus_M_contig7881.19141.1Fucus serratus malepolypeptideF-serratus_M_contig7881 10881..12062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7881.19141.1

>prot_F-serratus_M_contig7881.19141.1 ID=prot_F-serratus_M_contig7881.19141.1|Name=mRNA_F-serratus_M_contig7881.19141.1|organism=Fucus serratus male|type=polypeptide|length=121bp
AWGEKWCCWQDSRRSCGGCRGLRWGHVTGARRSWRCAILPLIENEKETKA
GGSATTLRPFRARTPPGHLPVPALPACYEPWCTVNFDVVCSGRSWRLPGW
FLASVTVKRNADWRAKTRRC*
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mRNA from alignment at F-serratus_M_contig7881:10881..12062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7881.19141.1 ID=mRNA_F-serratus_M_contig7881.19141.1|Name=mRNA_F-serratus_M_contig7881.19141.1|organism=Fucus serratus male|type=mRNA|length=1182bp|location=Sequence derived from alignment at F-serratus_M_contig7881:10881..12062- (Fucus serratus male)
GCGTGGGGAGAAAAATGGTGCTGCTGGCAGGACTCGCGGAGGTCATGTGG
CGGATGCCGAGGGCTTCGATGGGGCCACGTGACGGGGGCACGGCGATCCT
GGCGCTGCGCGATCTTGCCACTGATAGAGAACGAGAAGGAAACAAGTAAG
TTTTTGTTTTTGTTTTTGTTTTTTGTGATCCGTTACATTCTCATTTTAGC
GCCCCCATAAATCACCACCCTCGGTCGTCCAACTGAACGGACGAAAGTTA
TTTGTTTTTCGTGGCGGGGACTCGTGAATGTTTCTCGGTCGAAATAGAAA
AGTCTCGTTAACACCAAGTCAGGGGTCGAACGGGGACGGCGCATAAGGGG
GTCATTGTGCCTGTGTGTTGACTCTCTTGACTCCGCTCCTCGTTCTTTCG
TCAGTCGCATTTACAGCCGTCGCTGCGCCGCCGGTGGATGAGCGCTTACT
CACCCCGGCAGCCGCACGCCTGGTACTCAGACCGTCGTTGTTTCCGCTTT
CCCGTCGTCTTTACTCTCTCGGTAGAAATCGCTACGGTAATAAACATTGC
GAAAAGATCCCCTCGGTAGTTCTCCCTGAGAACCACGGCCGCTCTCGGCG
AGGCGGCGCCACGCCTTAAGCGTGTTACGATAGGGATTTCCGTCGCCTTC
CTCCGTTTCTTTCGATTTCCCCTCTGCCGATATCCAACCCTCCCCCCCCA
CCCCGAACACCCGGTTTCTCGCTGTCCAATCGGAACGGTGACTTCGTGAC
AATTACAAAGGCGTCTGCAAAAGTAGCCCCCCAAAAAGTTTAAACTATGG
TCGACTCTACCGAACGAAACTCTCCCCCCCCCCTCGCCCGCCTCCGTGAG
CGTTTTGTGAAAACAAAAACAAAAAAACGGGTACTTTCATACTTGATGCT
CCTGGTAAAACCAACTTATTCTCCCGGACATGCACGACACTTCCGTACGT
AACTTGTTCTTCAGAAGCCGGCGGTTCTGCTACTACTTTGCGACCTTTCC
GGGCAAGGACGCCCCCGGGCCATCTCCCGGTCCCAGCCTTGCCCGCGTGC
TACGAGCCCTGGTGTACTGTCAACTTCGACGTGGTCTGTTCCGGGAGGTC
CTGGAGACTACCCGGGTGGTTCTTGGCGAGCGTAACAGTCAAAAGGAATG
CCGATTGGCGGGCGAAGACGCGGCGATGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7881:10881..12062-

>mRNA_F-serratus_M_contig7881.19141.1 ID=mRNA_F-serratus_M_contig7881.19141.1|Name=mRNA_F-serratus_M_contig7881.19141.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig7881:10881..12062- (Fucus serratus male)
GCGTGGGGAGAAAAATGGTGCTGCTGGCAGGACTCGCGGAGGTCATGTGG
CGGATGCCGAGGGCTTCGATGGGGCCACGTGACGGGGGCACGGCGATCCT
GGCGCTGCGCGATCTTGCCACTGATAGAGAACGAGAAGGAAACAAGCGTG
GGGAGAAAAATGGTGCTGCTGGCAGGACTCGCGGAGGTCATGTGGCGGAT
GCCGAGGGCTTCGATGGGGCCACGTGACGGGGGCACGGCGATCCTGGCGC
TGCGCGATCTTGCCACTGATAGAGAACGAGAAGGAAACAAAAGCCGGCGG
TTCTGCTACTACTTTGCGACCTTTCCGGGCAAGGACGCCCCCGGGCCATC
TCCCGGTCCCAGCCTTGCCCGCGTGCTACGAGCCCTGGTGTACTGTCAAC
TTCGACGTGGTCTGTTCCGGGAGGTCCTGGAGACTACCCGGGTGGTTCTT
GGCGAGCGTAACAGTCAAAAGGAATGCCGATTGGCGGGCGAAGACGCGGC
GATGCTGAAAGCCGGCGGTTCTGCTACTACTTTGCGACCTTTCCGGGCAA
GGACGCCCCCGGGCCATCTCCCGGTCCCAGCCTTGCCCGCGTGCTACGAG
CCCTGGTGTACTGTCAACTTCGACGTGGTCTGTTCCGGGAGGTCCTGGAG
ACTACCCGGGTGGTTCTTGGCGAGCGTAACAGTCAAAAGGAATGCCGATT
GGCGGGCGAAGACGCGGCGATGCTGA
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