mRNA_F-serratus_M_contig788.19137.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig788.19137.1
Unique NamemRNA_F-serratus_M_contig788.19137.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.980e-32
Identity = 71/134 (52.99%), Postives = 89/134 (66.42%), Query Frame = 3 
Query:   78 IAFYLHRRNGIPFGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALETVRGPSGTSYSAVECHDVMPDYATLP-----SCMCKGELV-YNNACPYRGRSQTLTWFWLAALLWGGAVFRNV 461
            + FYL R++ I FG+ANLKVA LA+KSMP TV   +LMS +QVLW +++++AA GT+A+L TV G  GT+Y A  C DVM D  T       SCMC G +  YN+AC Y GR   L  FWLA+L WG  V RNV
Sbjct:  157 VRFYLKRQSRIRFGSANLKVAGLAVKSMPWTVRAGLLMSGVQVLWVLLSAMAAGGTIASLRTVTGLDGTTYKASSCSDVMLDPPTRGMVHHLSCMCGGHVASYNSACEYEGRGLWLALFWLASLTWGADVIRNV 290
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BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.670e-17
Identity = 60/154 (38.96%), Postives = 90/154 (58.44%), Query Frame = 3 
Query:   57 LVAFVFFIAFYLHRRNGIPFGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALE-TVRGPSGTSYSAVECHDVMPDYATLPS---------------CMCKGELVYNNA-CPYRGRSQ--TLTWFWLAALLWGGAVFRNV 461
            +VA+VF+       ++ + FGAANLKVAALA++SMP T+  A+ MSA+QV+W ++++ AA G+ AA    V G  GT+YS++EC D+     T+PS               C C GE++ +++ C + G      L  FWL ++ W  AV RNV
Sbjct:  261 IVAWVFW-----KNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDI-----TVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNV 404
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BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.410e-16
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 3 
Query:   57 LVAFVFFIAFYLHRRNGIPFGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALET-VRGPSGTSYSAVECHDVMPDYATLP----------SCMCKGELVYNNA-CPYRGRSQ--TLTWFWLAALLWGGAVFRNV 461
            +VA+VF+       ++ + FGAANLKVAALA++SMP T+  A+ MSA+QV+W ++++ AA G+ AA    V G  GT+YS++EC D+    +             SC C GE++ +++ C +        L  FWL ++ W  AV RNV
Sbjct:   64 IVAWVFW-----KNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSSGFPRWVLAAFWLGSVTWVIAVLRNV 207
[Close]
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.040e-11
Identity = 43/131 (32.82%), Postives = 75/131 (57.25%), Query Frame = 3 
Query:  114 FGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALE-TVRGPSGTSYSAVECHDVMPDYATLP----------SCMCKGELVYNNA-CPYRG---RSQTLTWFWLAALLWGGAVFRNV 461
            FGAA+L VAALA++SMP T++ A+ M A++V+W ++++++A G+  A    V    GT+YS + C D++   +             SC C GE++ +++ C + G   +   L  FW+ + +WG  V  +V
Sbjct:   84 FGAADLNVAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDV 214
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN10_ECTSI5.980e-3252.99Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM6_ECTSI2.670e-1738.96Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM4_ECTSI6.410e-1638.26Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM5_ECTSI3.040e-1132.82Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig788contigF-serratus_M_contig788:267526..268264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D7FN10
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size462
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig788.19137.1prot_F-serratus_M_contig788.19137.1Fucus serratus malepolypeptideF-serratus_M_contig788 267528..268264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932340.4823747-UTR-F-serratus_M_contig788:267525..2675271622932340.4823747-UTR-F-serratus_M_contig788:267525..267527Fucus serratus maleUTRF-serratus_M_contig788 267526..267527 +
1690964261.241551-UTR-F-serratus_M_contig788:267525..2675271690964261.241551-UTR-F-serratus_M_contig788:267525..267527Fucus serratus maleUTRF-serratus_M_contig788 267526..267527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932340.5076444-CDS-F-serratus_M_contig788:267527..2676591622932340.5076444-CDS-F-serratus_M_contig788:267527..267659Fucus serratus maleCDSF-serratus_M_contig788 267528..267659 +
1690964261.2612145-CDS-F-serratus_M_contig788:267527..2676591690964261.2612145-CDS-F-serratus_M_contig788:267527..267659Fucus serratus maleCDSF-serratus_M_contig788 267528..267659 +
1622932340.5266879-CDS-F-serratus_M_contig788:267937..2682641622932340.5266879-CDS-F-serratus_M_contig788:267937..268264Fucus serratus maleCDSF-serratus_M_contig788 267938..268264 +
1690964261.2703552-CDS-F-serratus_M_contig788:267937..2682641690964261.2703552-CDS-F-serratus_M_contig788:267937..268264Fucus serratus maleCDSF-serratus_M_contig788 267938..268264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig788.19137.1

>prot_F-serratus_M_contig788.19137.1 ID=prot_F-serratus_M_contig788.19137.1|Name=mRNA_F-serratus_M_contig788.19137.1|organism=Fucus serratus male|type=polypeptide|length=153bp
MVTVWALASYKIMIAGVFLVAFVFFIAFYLHRRNGIPFGAANLKVAALAI
KSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALETVRGPSGTSYSAVE
CHDVMPDYATLPSCMCKGELVYNNACPYRGRSQTLTWFWLAALLWGGAVF
RNV
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mRNA from alignment at F-serratus_M_contig788:267526..268264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig788.19137.1 ID=mRNA_F-serratus_M_contig788.19137.1|Name=mRNA_F-serratus_M_contig788.19137.1|organism=Fucus serratus male|type=mRNA|length=739bp|location=Sequence derived from alignment at F-serratus_M_contig788:267526..268264+ (Fucus serratus male)
CGATGGTGACGGTGTGGGCACTCGCAAGCTACAAGATCATGATTGCGGGG
GTGTTCTTGGTTGCGTTCGTCTTTTTCATTGCATTTTACTTGCACCGTCG
TAATGGCATTCCCTTTGGGGCGGCAAATCTTAAGGTGAGGAGACGTCGAG
CTTCGCTCGGCGTGGCATAATAGCGTAGTTTTTGTCATTCAGCGAGCCTC
CAATCGATGGGAGGATGGAGAGATACGTGCCTGCCTCGCCCCTTGCCGAA
AAAACGCACCAGTATACCGCAACACCGAGACGTCGAGCCCCCTCGGCGTG
GCATAGTTTAGTTTTGTCATTTTATCGAGACTCCGAACGACGGGAATGAA
TAGGAGATACGCGCCTTCCTCGTCCCATGCCGAAAAAAACGTTATGGTAC
TGAAACACGAAGGTGGCTGCGCTGGCGATCAAGTCGATGCCCCGGACCGT
TCACTTTGCAGTCCTCATGAGCGCGCTCCAAGTTTTGTGGGGGATAGTGA
CGTCCATTGCCGCGGCGGGGACCGTGGCCGCCCTCGAGACCGTGCGCGGG
CCGAGCGGGACCTCCTACAGCGCCGTAGAATGCCACGACGTGATGCCTGA
CTACGCAACGCTTCCATCCTGCATGTGCAAAGGCGAACTCGTCTACAACA
ACGCCTGTCCCTACCGCGGCCGGAGCCAGACCCTCACCTGGTTTTGGCTG
GCGGCCCTGCTCTGGGGCGGCGCCGTATTCCGAAACGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig788:267526..268264+

>mRNA_F-serratus_M_contig788.19137.1 ID=mRNA_F-serratus_M_contig788.19137.1|Name=mRNA_F-serratus_M_contig788.19137.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig788:267526..268264+ (Fucus serratus male)
ATGGTGACGGTGTGGGCACTCGCAAGCTACAAGATCATGATTGCGGGGGT
GTTCTTGGTTGCGTTCGTCTTTTTCATTGCATTTTACTTGCACCGTCGTA
ATGGCATTCCCTTTGGGGCGGCAAATCTTAAGATGGTGACGGTGTGGGCA
CTCGCAAGCTACAAGATCATGATTGCGGGGGTGTTCTTGGTTGCGTTCGT
CTTTTTCATTGCATTTTACTTGCACCGTCGTAATGGCATTCCCTTTGGGG
CGGCAAATCTTAAGGTGGCTGCGCTGGCGATCAAGTCGATGCCCCGGACC
GTTCACTTTGCAGTCCTCATGAGCGCGCTCCAAGTTTTGTGGGGGATAGT
GACGTCCATTGCCGCGGCGGGGACCGTGGCCGCCCTCGAGACCGTGCGCG
GGCCGAGCGGGACCTCCTACAGCGCCGTAGAATGCCACGACGTGATGCCT
GACTACGCAACGCTTCCATCCTGCATGTGCAAAGGCGAACTCGTCTACAA
CAACGCCTGTCCCTACCGCGGCCGGAGCCAGACCCTCACCTGGTTTTGGC
TGGCGGCCCTGCTCTGGGGCGGCGCCGTATTCCGAAACGTGGTGGCTGCG
CTGGCGATCAAGTCGATGCCCCGGACCGTTCACTTTGCAGTCCTCATGAG
CGCGCTCCAAGTTTTGTGGGGGATAGTGACGTCCATTGCCGCGGCGGGGA
CCGTGGCCGCCCTCGAGACCGTGCGCGGGCCGAGCGGGACCTCCTACAGC
GCCGTAGAATGCCACGACGTGATGCCTGACTACGCAACGCTTCCATCCTG
CATGTGCAAAGGCGAACTCGTCTACAACAACGCCTGTCCCTACCGCGGCC
GGAGCCAGACCCTCACCTGGTTTTGGCTGGCGGCCCTGCTCTGGGGCGGC
GCCGTATTCCGAAACGTG
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