mRNA_F-serratus_M_contig788.19135.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig788.19135.1
Unique NamemRNA_F-serratus_M_contig788.19135.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.670e-83
Identity = 155/402 (38.56%), Postives = 229/402 (56.97%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   E      FP+RE VG+LMW           AVRAVAR+C +P L H    M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW S  Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+  +  E          Q AD LTK L    F
Sbjct:   58 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 451          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 3.370e-83
Identity = 156/401 (38.90%), Postives = 230/401 (57.36%), Query Frame = 1
Query:    4 LRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            LRHFD +QAF+++D+DE++++ +PE      G + +LNK++YGL QA R W++     +  +GF Q  AD CVFR + +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+    IP   G   LS+ D+ +      E+  +P+RE +G+LMW           AVRAVAR+C +P   H +  + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW S  Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+     E          QHAD LTK L    F
Sbjct:   35 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 3.070e-81
Identity = 156/401 (38.90%), Postives = 230/401 (57.36%), Query Frame = 1
Query:    4 LRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            LRHFD +QAF+++D+DE++++ +PE      G + +LNK++YGL QA R W++     +  +GF Q  AD CVFR + +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+    IP   G   LS+ D+ +      E+  +P+RE +G+LMW           AVRAVAR+C +P   H +  + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW S  Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+     E          QHAD LTK L    F
Sbjct:  209 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.230e-77
Identity = 155/402 (38.56%), Postives = 229/402 (56.97%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   E      FP+RE VG+LMW           AVRAVAR+C +P L H    M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW S  Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+  +  E          Q AD LTK L    F
Sbjct: 1394 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1787          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.240e-77
Identity = 155/402 (38.56%), Postives = 229/402 (56.97%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   E      FP+RE VG+LMW           AVRAVAR+C +P L H    M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW S  Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+  +  E          Q AD LTK L    F
Sbjct: 1180 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1573          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.320e-77
Identity = 155/402 (38.56%), Postives = 229/402 (56.97%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   E      FP+RE VG+LMW           AVRAVAR+C +P L H    M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW S  Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+  +  E          Q AD LTK L    F
Sbjct: 1248 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1641          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 2.310e-77
Identity = 153/402 (38.06%), Postives = 229/402 (56.97%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   +      FP+RE VG+LMW           AVRAVAR+C +P L H    M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW S  Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + +FEDN+GAI+LA N  ++  +KHIDV+HH +R+  +  E          Q AD LTK L    F
Sbjct:  888 DLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATD------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 1281          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.300e-77
Identity = 155/401 (38.65%), Postives = 230/401 (57.36%), Query Frame = 1
Query:    4 LRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASED---------QHADLLTKPLDVKKF 1146
            LRHFD +QAF+++D+DE++++ +PE      G + +LNK++YGL QA R W++     +  +GF Q  AD CVFR + +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+    IP   G   LS+ D+ +      E+  +P+RE +G+LMW           AVRAVAR+C +P   H +  + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW S  Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+     E          QHA+ LTK L    F
Sbjct:  730 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDF 1122          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6H5J9U0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U0_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 4.000e-75
Identity = 151/402 (37.56%), Postives = 227/402 (56.47%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMW----------RAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDA---------SEDQHADLLTKPLDVKKF 1146
            +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   +      FP+RE VG+LMW           AVRAVAR+C +P L H    M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW S  Q+     T+EAEYVAL   +K++LFLRQ+  FM P + +  + VF+DN+GAI+LA N  ++  +KHIDV+HH +R+  +          S  Q AD LTK L    F
Sbjct:  528 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGKSVPMSSGV-KLSDFDADEVATD------FPFRELVGSLMWLATQTRPGIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALG-XMKEILFLRQIWRFMLPQVGMPCIPVFDDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKKISVIHVPSPYQRADFLTKSLPEDTF 920          
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.670e-74
Identity = 154/410 (37.56%), Postives = 237/410 (57.80%), Query Frame = 1
Query:    1 ELRHFDAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALMWRA----------VRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDASE---------DQHADLLTKPLDVK 1140
            E+   D + AFL   ++EEIY+E+PE  +E             V  L +++YGL QA R WN      + ++GFE A ADPCV+ +  +GE E +V ++VDD+L  ++ +A +    A + +KF++KD+G A +  G  I  + + R L   Q  Y ES++K+F  +  K  + P   G   L+KADEPQ  E+K +MK  PYR  VG+LM+ A          V  ++RF +NPG  H    +K+ +YLL TK+ GI Y G   G  +EAY+D+++    D RRSVSG +LML    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    +VGA+ ++EDN+GA+ LA N     RTKHID+++H +R+   +SE         +Q AD +TK L  K
Sbjct:   11 EIDQCDVDTAFLYGKMEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGLSSK 416          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig788.19135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE1.670e-8338.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.370e-8338.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.070e-8138.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE1.230e-7738.56Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE1.240e-7738.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE1.320e-7738.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE2.310e-7738.06Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5K2R1_9PHAE3.300e-7738.65Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J9U0_9PHAE4.000e-7537.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA5.670e-7437.56Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig788contigF-serratus_M_contig788:72595..73767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue1.3e-58
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1146
Cds size1146
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932340.1958327-CDS-F-serratus_M_contig788:72594..726491622932340.1958327-CDS-F-serratus_M_contig788:72594..72649Fucus serratus maleCDSF-serratus_M_contig788 72595..72649 -
1690964261.1282766-CDS-F-serratus_M_contig788:72594..726491690964261.1282766-CDS-F-serratus_M_contig788:72594..72649Fucus serratus maleCDSF-serratus_M_contig788 72595..72649 -
1622932340.2105982-CDS-F-serratus_M_contig788:72676..737671622932340.2105982-CDS-F-serratus_M_contig788:72676..73767Fucus serratus maleCDSF-serratus_M_contig788 72677..73767 -
1690964261.1408312-CDS-F-serratus_M_contig788:72676..737671690964261.1408312-CDS-F-serratus_M_contig788:72676..73767Fucus serratus maleCDSF-serratus_M_contig788 72677..73767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig788.19135.1prot_F-serratus_M_contig788.19135.1Fucus serratus malepolypeptideF-serratus_M_contig788 72595..73767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig788.19135.1

>prot_F-serratus_M_contig788.19135.1 ID=prot_F-serratus_M_contig788.19135.1|Name=mRNA_F-serratus_M_contig788.19135.1|organism=Fucus serratus male|type=polypeptide|length=382bp
ELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGR
CWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKD
QATMDRFAAELGQKFKLKDMGDAVYYRGCHITRNRKTRELKFDQHLYVES
MVKRFDVKKEAIIPAASGAPTLSKADEPQNPEEKKEMKMFPYREAVGALM
WRAVRAVARFCKNPGLAHKKEVMKIFQYLLHTKEWGITYGGQGCGLCMEA
YTDSDFGACLDTRRSVSGAVLMLAKGAISWHSWMQEVTAAGTSEAEYVAL
SEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKH
IDVKHHLVRDASDASEDQHADLLTKPLDVKKF
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mRNA from alignment at F-serratus_M_contig788:72595..73767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig788.19135.1 ID=mRNA_F-serratus_M_contig788.19135.1|Name=mRNA_F-serratus_M_contig788.19135.1|organism=Fucus serratus male|type=mRNA|length=1173bp|location=Sequence derived from alignment at F-serratus_M_contig788:72595..73767- (Fucus serratus male)
GAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGA CGAGGAGATATACATAGAGATCCCTGAGGAGTTCCAGGAGTTTCCGGGGG CAGTGGGACGGCTTAACAAGGCCATTTACGGACTCGTACAGGCGGGGAGG TGCTGGAATAATAAGTTCTGTGACGACATGACGGCGATTGGATTCGAGCA GGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGG AGATGGTGGTGGTCGTGCACGTAGACGACATCCTTGCCCACGCAAAAGAC CAAGCGACGATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTAAGTT GAAGGACATGGGGGACGCTGTATACTACAGGGGTTGTCACATCACCAGGA ACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTGTACGTAGAGTCA ATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCATAATACCGGCTGCGTC GGGGGCGCCGACGCTCTCAAAGGCGGATGAGCCGCAAAACCCAGAGGAGA AGAAAGAGATGAAGATGTTTCCGTACCGAGAGGCAGTGGGGGCGCTCATG TGGCGCGCCGTACGCGCTGTGGCTAGGTTCTGCAAAAACCCTGGGCTGGC ACACAAGAAGGAAGTGATGAAGATCTTCCAGTATCTTCTTCACACGAAAG AATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTGCATGGAAGCA TATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGACGGTCGGTTTC AGGTGCGGTGTTGATGTTGGCCAAGGGAGCGATCAGTTGGCACTCGTGGA TGCAAGAAGTAACAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTA TCGGAGGTAGTAAAGGATGTACTATTTTTGAGACAGGTGCAGGAGTTCAT GGAACCGTCGATGAGGGTCGGTGCGGTAAATGTATTTGAAGATAATGAGG GGGCCATCAAGCTGGCCACGAACAAGCATGCTAGCCGTAGGACTAAGCAC ATTGATGTGAAGCATCATCTGGTAAGGGACGCGTCTGACGCGTAAAGGGT AAGAGTATCGTACGTAAGGTCGGAAGATCAACACGCGGATTTGCTCACGA AACCGCTAGACGTGAAAAAGTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig788:72595..73767-

>mRNA_F-serratus_M_contig788.19135.1 ID=mRNA_F-serratus_M_contig788.19135.1|Name=mRNA_F-serratus_M_contig788.19135.1|organism=Fucus serratus male|type=CDS|length=2292bp|location=Sequence derived from alignment at F-serratus_M_contig788:72595..73767- (Fucus serratus male)
GAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGA
CGAGGAGATATACATAGAGATCCCTGAGGAGTTCCAGGAGTTTCCGGGGG
CAGTGGGACGGCTTAACAAGGCCATTTACGGACTCGTACAGGCGGGGAGG
TGCTGGAATAATAAGTTCTGTGACGACATGACGGCGATTGGATTCGAGCA
GGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGG
AGATGGTGGTGGTCGTGCACGTAGACGACATCCTTGCCCACGCAAAAGAC
CAAGCGACGATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTAAGTT
GAAGGACATGGGGGACGCTGTATACTACAGGGGTTGTCACATCACCAGGA
ACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTGTACGTAGAGTCA
ATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCATAATACCGGCTGCGTC
GGGGGCGCCGACGCTCTCAAAGGCGGATGAGCCGCAAAACCCAGAGGAGA
AGAAAGAGATGAAGATGTTTCCGTACCGAGAGGCAGTGGGGGCGCTCATG
TGGCGCGCCGTACGCGCTGTGGCTAGGTTCTGCAAAAACCCTGGGCTGGC
ACACAAGAAGGAAGTGATGAAGATCTTCCAGTATCTTCTTCACACGAAAG
AATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTGCATGGAAGCA
TATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGACGGTCGGTTTC
AGGTGCGGTGTTGATGTTGGCCAAGGGAGCGATCAGTTGGCACTCGTGGA
TGCAAGAAGTAACAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTA
TCGGAGGTAGTAAAGGATGTACTATTTTTGAGACAGGTGCAGGAGTTCAT
GGAACCGTCGATGAGGGTCGGTGCGGTAAATGTATTTGAAGATAATGAGG
GGGCCATCAAGCTGGCCACGAACAAGCATGCTAGCCGTAGGACTAAGCAC
ATTGATGTGAAGCATCATCTGGTAAGGGACGCGTCTGACGCGAGCTGCGC
CATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGAGGAGAT
ATACATAGAGATCCCTGAGGAGTTCCAGGAGTTTCCGGGGGCAGTGGGAC
GGCTTAACAAGGCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAAT
AATAAGTTCTGTGACGACATGACGGCGATTGGATTCGAGCAGGCAAAGGC
GGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGATGGTGG
TGGTCGTGCACGTAGACGACATCCTTGCCCACGCAAAAGACCAAGCGACG
ATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTAAGTTGAAGGACAT
GGGGGACGCTGTATACTACAGGGGTTGTCACATCACCAGGAACCGCAAGA
CGCGTGAGTTGAAGTTCGACCAACACCTGTACGTAGAGTCAATGGTAAAG
AGATTCGATGTCAAGAAGGAAGCCATAATACCGGCTGCGTCGGGGGCGCC
GACGCTCTCAAAGGCGGATGAGCCGCAAAACCCAGAGGAGAAGAAAGAGA
TGAAGATGTTTCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGCGCGCC
GTACGCGCTGTGGCTAGGTTCTGCAAAAACCCTGGGCTGGCACACAAGAA
GGAAGTGATGAAGATCTTCCAGTATCTTCTTCACACGAAAGAATGGGGGA
TTACGTACGGTGGACAGGGCTGTGGACTCTGCATGGAAGCATATACGGAT
TCGGATTTCGGAGCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGT
GTTGATGTTGGCCAAGGGAGCGATCAGTTGGCACTCGTGGATGCAAGAAG
TAACAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTA
GTAAAGGATGTACTATTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTC
GATGAGGGTCGGTGCGGTAAATGTATTTGAAGATAATGAGGGGGCCATCA
AGCTGGCCACGAACAAGCATGCTAGCCGTAGGACTAAGCACATTGATGTG
AAGCATCATCTGGTAAGGGACGCGTCTGACGCGTCGGAAGATCAACACGC
GGATTTGCTCACGAAACCGCTAGACGTGAAAAAGTTCGTCGGAAGATCAA
CACGCGGATTTGCTCACGAAACCGCTAGACGTGAAAAAGTTC
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