mRNA_F-serratus_M_contig7851.19111.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7851.19111.1
Unique NamemRNA_F-serratus_M_contig7851.19111.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A8F0JZ14_9PHAE (Ribosomal protein S18 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ14_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.620e-46
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN
Sbjct:    1 MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A7D3QC30_SACLA (30S ribosomal protein S18, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A7D3QC30_SACLA)

HSP 1 Score: 125 bits (315), Expect = 3.850e-36
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:   25 KMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            K  KT+RQPFKLKP+ETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   12 KPTKTRRQPFKLKPNETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 84
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: D1J7B6_ECTSI (30S ribosomal protein S18, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.250e-34
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:   34 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            K +RQPFKLKP+ TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYL LLPFV SVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 107
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A7T8G5I0_SCYLO (30S ribosomal protein S18, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5I0_SCYLO)

HSP 1 Score: 119 bits (299), Expect = 2.080e-33
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:   34 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            K +RQPFKLKP+ TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 107
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A6B7EYX7_9PHAE (30S ribosomal protein S18 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYX7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.070e-32
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   34 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            K +RQPFKLKP+ TIDYKQVDILL+F TEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   34 KVRRQPFKLKPTATIDYKQVDILLAFCTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 103
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A8F0F760_9PHAE (Ribosomal protein S18 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F760_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.200e-31
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:   28 MVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            MVK KRQ FKLK  +TIDYKQVDILLSF T++GKI+SRRSTNLTLKQQRQLSKSIKRARYLRLLP V+S EN
Sbjct:    1 MVKNKRQTFKLKSKDTIDYKQVDILLSFLTDYGKIRSRRSTNLTLKQQRQLSKSIKRARYLRLLPLVLSPEN 72
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A1I9LVI1_9PHAE (30S ribosomal protein S18, chloroplastic n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVI1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.490e-29
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   34 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            K +R+P KLKP+  IDYKQVDILL+FSTEHGKIKSRR T LTLKQQRQLSKSIKRARYL LLPFV SVEN
Sbjct:   54 KVRREPLKLKPTARIDYKQVDILLAFSTEHGKIKSRRLTKLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 123
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A2R4QPW6_9PHAE (30S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.300e-26
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   34 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            K KRQ +K+K +E IDYKQVDILLSF TEHGKIK RRSTNLTLKQQRQLSK+IK AR L LLPFV S+E+
Sbjct:    4 KAKRQTYKIKSNERIDYKQVDILLSFLTEHGKIKPRRSTNLTLKQQRQLSKAIKTARSLNLLPFVTSLED 73
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A141BSF9_9PHAE (30S ribosomal protein S18, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSF9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.180e-26
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   34 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            KTKR  +KLKP+E IDYKQVDIL+SF TEHGKIKSRRST LTL+QQRQLS++IK AR L LLPFV S+E+
Sbjct:    8 KTKRNNYKLKPNEKIDYKQVDILVSFLTEHGKIKSRRSTELTLQQQRQLSRAIKTARSLNLLPFVTSLED 77
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A8E6D6A7_9PHAE (30S ribosomal protein S18, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6A7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.930e-18
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   13 VKQSKMVKTKRQ-PFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 243
            ++Q K  K K+  P K+    TIDYKQ+D+LLS  TE GKIK R+ T  TLKQQRQLSK++KRAR L LLPFV   E 
Sbjct:    1 MQQKKKSKNKKSTPIKITAKHTIDYKQIDLLLSCLTEQGKIKPRKITEFTLKQQRQLSKAVKRARILSLLPFVTVTEK 78
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZ14_9PHAE8.620e-46100.00Ribosomal protein S18 n=1 Tax=Desmarestia aculeata... [more]
A0A7D3QC30_SACLA3.850e-3690.4130S ribosomal protein S18, chloroplastic n=26 Tax=... [more]
D1J7B6_ECTSI7.250e-3490.0030S ribosomal protein S18, chloroplastic n=2 Tax=E... [more]
A0A7T8G5I0_SCYLO2.080e-3388.5730S ribosomal protein S18, chloroplastic n=4 Tax=S... [more]
A0A6B7EYX7_9PHAE1.070e-3287.1430S ribosomal protein S18 n=1 Tax=Cladosiphon okam... [more]
A0A8F0F760_9PHAE4.200e-3183.33Ribosomal protein S18 n=1 Tax=Protohalopteris sp. ... [more]
A0A1I9LVI1_9PHAE1.490e-2982.8630S ribosomal protein S18, chloroplastic n=2 Tax=P... [more]
A0A2R4QPW6_9PHAE2.300e-2677.1430S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSF9_9PHAE5.180e-2675.7130S ribosomal protein S18, chloroplastic n=13 Tax=... [more]
A0A8E6D6A7_9PHAE8.930e-1857.6930S ribosomal protein S18, chloroplastic n=1 Tax=I... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7851contigF-serratus_M_contig7851:3104..3349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog395961.Cyan7425_0902
Preferred namerpsR
KEGG koko:K02963,ko:K03111,ko:K15125
KEGG Pathwayko03010,ko03030,ko03430,ko03440,ko05133,map03010,map03030,map03430,map03440,map05133
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
EggNOG OGs1G7NE@1117,3KII5@43988,COG0238@1,COG0238@2
COG Functional cat.J
Best tax levelCyanothece
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00536,ko03011,ko03029,ko03032,ko03400
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932336.086189-CDS-F-serratus_M_contig7851:3103..33491622932336.086189-CDS-F-serratus_M_contig7851:3103..3349Fucus serratus maleCDSF-serratus_M_contig7851 3104..3349 +
1690964259.4688556-CDS-F-serratus_M_contig7851:3103..33491690964259.4688556-CDS-F-serratus_M_contig7851:3103..3349Fucus serratus maleCDSF-serratus_M_contig7851 3104..3349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7851.19111.1prot_F-serratus_M_contig7851.19111.1Fucus serratus malepolypeptideF-serratus_M_contig7851 3104..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7851.19111.1

>prot_F-serratus_M_contig7851.19111.1 ID=prot_F-serratus_M_contig7851.19111.1|Name=mRNA_F-serratus_M_contig7851.19111.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRST
NLTLKQQRQLSKSIKRARYLRLLPFVISVEN*
back to top

mRNA from alignment at F-serratus_M_contig7851:3104..3349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7851.19111.1 ID=mRNA_F-serratus_M_contig7851.19111.1|Name=mRNA_F-serratus_M_contig7851.19111.1|organism=Fucus serratus male|type=mRNA|length=246bp|location=Sequence derived from alignment at F-serratus_M_contig7851:3104..3349+ (Fucus serratus male)
ATGTCAAAAACAGTAAAGCAGTCAAAAATGGTAAAAACAAAACGACAACC
ATTCAAACTTAAACCAAGCGAAACAATTGACTATAAGCAAGTAGATATCT
TACTTTCATTTTCAACTGAGCATGGCAAAATAAAATCACGTCGTTCAACA
AATTTAACATTAAAACAACAAAGACAACTGTCCAAATCGATTAAACGAGC
TAGATATTTACGCTTATTACCCTTTGTTATATCAGTGGAAAATTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7851:3104..3349+

>mRNA_F-serratus_M_contig7851.19111.1 ID=mRNA_F-serratus_M_contig7851.19111.1|Name=mRNA_F-serratus_M_contig7851.19111.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig7851:3104..3349+ (Fucus serratus male)
ATGTCAAAAACAGTAAAGCAGTCAAAAATGGTAAAAACAAAACGACAACC
ATTCAAACTTAAACCAAGCGAAACAATTGACTATAAGCAAGTAGATATCT
TACTTTCATTTTCAACTGAGCATGGCAAAATAAAATCACGTCGTTCAACA
AATTTAACATTAAAACAACAAAGACAACTGTCCAAATCGATTAAACGAGC
TAGATATTTACGCTTATTACCCTTTGTTATATCAGTGGAAAATTAAATGT
CAAAAACAGTAAAGCAGTCAAAAATGGTAAAAACAAAACGACAACCATTC
AAACTTAAACCAAGCGAAACAATTGACTATAAGCAAGTAGATATCTTACT
TTCATTTTCAACTGAGCATGGCAAAATAAAATCACGTCGTTCAACAAATT
TAACATTAAAACAACAAAGACAACTGTCCAAATCGATTAAACGAGCTAGA
TATTTACGCTTATTACCCTTTGTTATATCAGTGGAAAATTAA
back to top