mRNA_F-serratus_M_contig785.19106.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig785.19106.1
Unique NamemRNA_F-serratus_M_contig785.19106.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig785.19106.1 vs. uniprot
Match: D7FMW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMW4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.850e-28
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  247 LAVMDEATELPPFGFNIGILEQRLERRLGFEVAKSAIHECLLPYYNLREWEERYVMTTLGTEMEDFPGKGSGNHP 471
            +AV+DEATELPPFGFNI +LEQRL+ RLG E+A+SAI+ CL PYYNLREWE+RYV+T+LG+E+++F   GS  HP
Sbjct:    1 MAVLDEATELPPFGFNIAVLEQRLKHRLGLEIAQSAINACLSPYYNLREWEDRYVVTSLGSEVQEF---GSAGHP 72
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMW4_ECTSI2.850e-2868.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:292680..299365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002730.1
Exons2
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932332.8210416-CDS-F-serratus_M_contig785:292679..2930271622932332.8210416-CDS-F-serratus_M_contig785:292679..293027Fucus serratus maleCDSF-serratus_M_contig785 292680..293027 +
1690964257.8580282-CDS-F-serratus_M_contig785:292679..2930271690964257.8580282-CDS-F-serratus_M_contig785:292679..293027Fucus serratus maleCDSF-serratus_M_contig785 292680..293027 +
1622932332.8424454-CDS-F-serratus_M_contig785:299242..2993651622932332.8424454-CDS-F-serratus_M_contig785:299242..299365Fucus serratus maleCDSF-serratus_M_contig785 299243..299365 +
1690964257.871539-CDS-F-serratus_M_contig785:299242..2993651690964257.871539-CDS-F-serratus_M_contig785:299242..299365Fucus serratus maleCDSF-serratus_M_contig785 299243..299365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19106.1prot_F-serratus_M_contig785.19106.1Fucus serratus malepolypeptideF-serratus_M_contig785 292680..299365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig785.19106.1

>prot_F-serratus_M_contig785.19106.1 ID=prot_F-serratus_M_contig785.19106.1|Name=mRNA_F-serratus_M_contig785.19106.1|organism=Fucus serratus male|type=polypeptide|length=157bp
RPYNSSFSQCRIFKGGILEQALNMADRHHYPRTDRKGSTACREGASSSSS
SSSTTAIITSTASPFASTKRITTAAELSLPETLAVMDEATELPPFGFNIG
ILEQRLERRLGFEVAKSAIHECLLPYYNLREWEERYVMTTLGTEMEDFPG
KGSGNHP
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mRNA from alignment at F-serratus_M_contig785:292680..299365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig785.19106.1 ID=mRNA_F-serratus_M_contig785.19106.1|Name=mRNA_F-serratus_M_contig785.19106.1|organism=Fucus serratus male|type=mRNA|length=6686bp|location=Sequence derived from alignment at F-serratus_M_contig785:292680..299365+ (Fucus serratus male)
AGGCCTTACAATTCTTCATTTTCCCAGTGTAGAATTTTCAAGGGGGGTAT
ACTTGAACAGGCGCTCAACATGGCAGATCGTCATCACTATCCACGGACTG
ATCGAAAAGGGTCGACGGCATGCCGGGAAGGTGCGAGCAGTAGCAGCAGC
AGCAGCAGCACTACTGCCATCATCACCTCCACAGCCTCGCCGTTCGCGAG
CACGAAGCGAATCACGACAGCTGCAGAGCTGAGCCTACCCGAAACGCTTG
CGGTGATGGACGAGGCGACGGAGCTCCCGCCCTTCGGATTTAACATCGGG
ATACTGGAGCAGCGGTTGGAGCGACGCCTTGGGTTTGAAGTCGCCAAGGT
GCTGCTCCTCGGTGGCCGTAGAGTTTTTCCGCTTTTTGCTGTGTACCAGT
AGCTCTCTTCTATCATAGCTCTAGTTGTACCTAGTTGTACCCTAGGTGTA
CTGTTTGTAGACCATGCGTTTTCGTTACAGTCATGATGCTCTCCCGTTTT
TTGCCGGTGGGCCTACAAAGTGCAACAGGTTTTGTCTTGTGCAGCCTATT
ATGATCCTATTAATACCTAAACGCGTTGACATTTCCCCCCCTGCCTCCGG
GGGATACTCAGAAAGTCTACGGTAGATGCGTTCAGATTTTTTCTTTCAAA
CTACCTGCACAGCACTTAGTAAACCCTACTGGTACCAGTCTGACAAAAAA
TTTAACCCACATTTGGGATACAAAAAATATAAGCCACATTTGCAAATGAA
GCCATGGGGTTCATCGAAAACATACCAGTACTTTATAATCGTACGTATCG
TCCATCCAGAGAGGACAAATTGTTGAGGAATCCATTTTTGGAGATGACCT
TTTTTCGAGTATTTCTTGTACCATTTCCGATTTTCTTTGTATGGAGATAC
GAAAACGTTCTTTCCTTCCGAATGGTGTTTTTCGACCTTGTGACCACGGG
CTGGGTTTTTTGATCAGCTTAAAAACAATCAATCAATCAATCAATCAAGA
TAATCAATCTTTTTTCCTGATTTTTTTTTTTTTTTTTTTTCGAAAAATTC
AGATCGAAAAACGCCGTTTTTCGTTTTCGACTTTTGCGTTTTCTTTTTTT
CCCTGTTCAGCAGATCGGGCGGGATTTCAGAAAAGCTAAATGTTTTTTTC
TGATGGCAAAAATCCTGAATCGAAAAACGCAACAAACGTTTTTCGTTATC
GATCCTGCGTTTTCGATCTCCATTAGTTGATCGGGGGGCCAGTTATCATT
GAAACCCATATTTTGCGCAATTTTGCGCAATTTTCCCAGTCAGGAATTTT
TGGGGTTTTACTGAGCTCGTGCAGGTGCGAAAATTCAAAATCCGAGTTTT
TTTACACTTGTTTCTACTATAGTATTTTAGGTACTTTTAGCCATGAAAAT
AACTGCCTTTTGGGATCATTCTAAATATGAATTGCTCTTCAACCGGCGGA
AAGAAAAATGTTCGTCTCCGAGGTGTACTCAGGTTTTATTAGTGCACACA
CGACCAACAACAAAAAAAATGAAACTTTTTTTTGTGAAAACAAAAAGGTC
TACTGGTAGGTGCGTTCTGTATTTTCTTCAAAAAAGGTCAACAGGTGAGC
TCCCCGGGGCTCGAAACCATGACCTCTGATTCATAGTCTATCAACGTACA
ATTTGTTGTCTCCCGAAAGTGGCTTATATTTTTTGTCGGACTGTATTATA
TTACCATATATAGAGGTTCTTCGTCAGCTTTCTTCTATGTGTGTATCCCC
TTTGTACAATAAAAGTACATGCCCACCTGTAACAGTAGTGGTGGGTGAAT
AGACAGAACCCGTTACTCAACCTACCTTGAGGAGTGATACTACTACTGTC
TCTCTGAAGGTAGACTCTCGGCGGCGAACGCCATCGATACGTGATTTGCG
TAACCTGGTACACCCGGGACTAACCCGATGGCGTTTGACGAGATGTTCGA
CGGACTCAGTCGCGAGAAGCGAGAGGAAGGGCATGAAGCCCTTGAGTACC
GGAAGCACCAGATTATGCCTGGTTGTGGAGAATCAGCGGGCTGACGCGGG
ACGGGACGGCCGAACTTGTTTCGGGAGACCAAATTCTCGGAAGCGTTTTC
CCTGCCCAGCTGACCTGGCGACTACAGTACCGGCCCGGCCCACTCACAAG
AAACACCTATTTCGAGCAAAGCTTAAACCTTATTGCCCCCGCGGATGCAA
GCGCAGTTTCTTATTTTACCATTATTTCTTATTCCTAGCCAAGAATATTA
TTGCACCTATTTCTTATTTCCCGTTTTTTGTTTCCAGCGCTGTAATTTCA
TCTTCCTTCTTATACGGCAGTCATTGCTTTTTTCTTCTCCATCATGTGGT
CGTTGTCATTCTTAAGACGAATTTTCGTTGCCAGTACTACCGCACCTGTG
TCACCACACGTCTATGTGACACCTGTTCCGTAGTACCAGGTACGGTACTA
CAGTAGAACCAGTCAGCTGTTGTGCAGACAGGTACGTGTGTACCGTACGT
ACAGACAGCCGCGAGGCCATTATTTTCTTGTTCCCACGTCCAACCCCATA
TACATATATCTTGTTTCCTATCACCGGGAGCACGATATTGATGGATTTCT
TGCTACTCCGTTTCTTATCGTTCTTCTTCTTTTGAGCGCAATTTCTTACG
GCTCATTTCTTATTTAATAAAAAAACTTACGAGTGGGTCGGTACTGTTCT
ATACCAGGCTAATCCCCAGTCTGCTAAAAGATGTGGCCAACAACAGACAG
TACCAAATTTAAAATTTCCCCCCGGTTCAAGCATACGCCTCTGAAATCGC
AACGTAACAGTTCGGTTAGATCCTTCGTACACGTCGTCGATCAATGGTTT
GAGGTTTTAAGCTCTACTCGAGGGTAAAGTGCCCGCTACCAGTACGGAAG
TCAAGAAAACCGTGGATTGTCGCTTGAGACTCGAACTCACAAAGTCTGCA
CAATAGGACTATTATAGATAACTACACTATTAATAAGTACAACAGAGTGG
GTATAAAGAAAAATCTGAACGCATCTAGATATATACTATTAATAGTAGAC
CTTCTGAGTAGCAAACCTAAAATAATAGGTGCGTTCTGTATTTTCTTCAA
AAAATAAAATAAAATAAATTACCAATTACCGGTATCATTTTTTTCATATT
TGTTTTTTTTCGAGTAAATATTTTTCTTTGGATTTACGTTCGAGTGACAA
GAAGTACCATTGTACTTCACAATGATTTTCTTTAGACAAATATCATACTT
ACCGGACATGGAGGCGTGAAGGTATTAATATAATAGTGAGTTGCTGTCCT
GGGAAGTAATGTGCAGAGAGTGGGCATGTTGAAAGTAACTAAAAAGTTGT
TACTTGCTTACAGACCGTGTTATAAAGCGGGCTGGCAAGCTCAGAGACAA
AAAAAGTTGTTACTTGCTTACAGACCGTGTTATTGCTTTTCAAAAATAAC
TTGAGCATAATATACGAGTATGTATTAACACTGCAGTCACCAGAACCCTC
CGAAAGCATCCATCGTTACAATATAACTGCGACCGCGAACATCGCAATGC
AAATATGCTCGAGTTGTGAGTATCTTCCCCATTTGACGTGTTCCACAATA
TTACATTATACTGCTCTGTAGCACCTACCAGGTACCCCGTATGGTGTTGC
GTACCTCTATAGGTCTTTTCAGCCTTGGCCACCTTTTCCCGTTTTTTTTT
TTTGCGAGTACTGACTGTATGTGCGTATTTTTTTTGTCCATCCATTCGTC
GCCCGAGTGGTCTAGTAGGTAACCTGCGTATCTGCTAGTCCGTAAGTCGT
GAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTTCTTTCTTTCGTAACGG
AAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTGATGAGTTG
TAAGAGTGCTGAACTTGCCTCGCGATAAAAATTGCAAGGCGTGAACCGGG
GAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTAATTAGAGGC
CCATCGGTATATATATATTCATCACATGGTGGGCAGCCAACAAGGTGGTT
ACAAGACTCTCGCTTGTGGTTAGTGCAAGTGAAATTTGATACCAGTAGTA
TGAAAATATACCTGGTAATGATTAATGATTGTGTGTGGCCATCACCTTCA
TCCAGCAAATAAATGGGTATGGCTGTTTGCCCCACCGGTGGGGCAAATAA
AATATGCAACAACCAACCGTTGTTGTGTTCACACTTATAGCCGATGGACC
TCTAATTACCATCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCC
GGTGCACGCCTTGCAATTTTTATCGCGATGCAAGTTCAGCACTCTTACAA
CTCGTCAACCAATGGTTGAGTGTTATGACGTTACTTTCAACATGCCCACT
TCATACCACATGACCAATAGTGGGTGTGGGAAAGAGAGGCGTATATTAAT
TGGTCCATAGTGACTTGCTAAGGCAGCAGTCGTTCGGAACTACCTTGAGA
TTTACTGGCCCTGTGCCGACGGACTCTCGGCAGTGAACGCCATCGGTACG
CAATATTGCGTGACCCGATAAACTTGGGACTTACCCGATGGCGTATGGCG
GTTTAATCCGTATGATTGCCAATCCTGCTGGCGGTCAGTGGAACAAAGGA
AAACTGTTTTTTTTTTCCCCTCCTGCCCGTTTGCGCCAGAGAATCTGGTC
TCGCGAGACAGGTTCGGCTGTCCCGTCCCACGCCAGCCCGCCCATTCTCC
ATATCCGGGCTGAAGCTGATGCTTACTCGCGGGACTTTCCCCCCCCCCCC
GCTTTCCGAGACGGTGTCGCATCTACACCGCCAAACGCCCGAAGGACCAG
TCCCAAGTTTTATACGGCCGCGCAAAAAATGCGTACCGATAAGGTCCACC
GCCGAGAGACCGCCGGCACAGGGCCAGCTGTTCCCCAAGGTTAGCTCGAG
GAACTGTGCGGTACCAGGTTACCCCATGGACCACTTCGTGTGCGCCCCGC
TTCTACCACATCCAACTAACTATTAATAACTACCTGGTACAAGTACTGAT
CCAGTGAAGTATGTGCGATTCTGGAGGCATAAAATATTTCCGAATCCTCC
CCCAACAGGGATGATTTAGATTTGAATATTTAAGAGCACTTTGCTCGAAT
CGTCTGCTGCGTATGGTAGTCATTACTATCGCGCTTCCCCCTTTGAAAAG
AGCTAGTGTTCGTCTTTCTAAGACAAAGCATCGCATAGACCATCCCCAAA
TAAGACATCAAACGTTCCGACATTTTTTTCCCCCTGACTGGGGGATGCTC
GGAAGGTCTCTAGGCGCGTTCCAGTTTTTTCTTTAAACCGAAAACAGGCT
TTCTGGGAAAAGTGGCCAAAATGTGACTAAACTAAAGATACCAAAACCAG
GCAAAAGACTAAAATATAAACTTCGGGGTGTCCAAAAAAACAAAATAAAG
GTTGGTAAGGAACAGCCCTCCCCATGCCAGCGACGGTTTACAAGCCGACT
CCGCGCCTTTCAGTCCTTCTTTATTCCCCTCTCAAGGAGTGGCTGGTCTG
ACAATTTCCGCATGGATCTCATGATTTTCGCAAGCCTGTCTCGCGCATTT
TGTTTATTTTTATTTGGTGTATTCGGCCGCTGTAAGACACACTTGTGTTT
TCTCGTTTTCGTTGAAAACAACCCCCACTTTCCTCCATAACATTACATAT
AACATTCGTCGCCCGAGTGGTATATTAGTAGTAGGTAACCTGCATACCTG
CTAGTGCGGCATTCGTGAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTT
TTTTCTTTCGTAACGGAAAGCGTGAGAATGTCAGTAAGTAAAATCCAACC
ATTGGTTGACGAGTTGTAAGAGGTGCTGAACTTGCATCGCGATAAAAATT
GAAAGGCGTGAACCGGGGAGAGATGGGAAGATCATTTTTTGTGACCACAG
GCAGGATGGTAATTAGAGGTCCATCGGCTAAAAGTGTGATAGATTAAACG
GCCCAGTCGAAACGGTGGCGGTGCATAGAGCGGCGAATAATCCTACGGAC
AGCACATGACCATGCGTCATGGTTGTCCCGAGACGATTACCCCGTGCACC
GCGTGATTCCTTCACCTTCGGCGTAATGGGTGCCAACCCAAGCCATCCCC
GGTAGCCGGAGACTAACTAACCTCTTGAACTGTAGGGGGCGCCACTTACA
AAAGTCTAGGCCAGGGTGGCGTGTTTCCCAACCCATCTACACTAGCGTAC
ACACTTTACACGTGCGCGGTGCGAGCGCTAAGCTTTTTTCTCGTGACTTG
TTTCTGCACCACGAGTTGTGCGTATTCGAGTCTCTCTATGACCACGACGG
GAAGTTAATCTTGACTGAAGTTGAAGTTGAACGATAGAACCCAAAAGCAC
GGCGATGTGTGCTCGCTTTCGATGCCCGACGTCTCGGATCCACGCTTTAA
ACCGATTTTTTTTTTTTCAACTCGGAAATGATGCCTATCTTCCCCCGCTG
GCCGACTCTCCCCTATTCCTGCCTGCGTGTGTATGCCTTGTCTTTTCGAT
TGAATAAAAAAAGTCGGCAATACACGAGTGCCTGCTGCCGTATTACAATC
TGAGAGAGTGGGAAGAGCGCTACGTGATGACGACGCTGGGCACGGAGATG
GAAGATTTCCCGGGCAAGGGCAGCGGGAACCACCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig785:292680..299365+

>mRNA_F-serratus_M_contig785.19106.1 ID=mRNA_F-serratus_M_contig785.19106.1|Name=mRNA_F-serratus_M_contig785.19106.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig785:292680..299365+ (Fucus serratus male)
AGGCCTTACAATTCTTCATTTTCCCAGTGTAGAATTTTCAAGGGGGGTAT
ACTTGAACAGGCGCTCAACATGGCAGATCGTCATCACTATCCACGGACTG
ATCGAAAAGGGTCGACGGCATGCCGGGAAGGTGCGAGCAGTAGCAGCAGC
AGCAGCAGCACTACTGCCATCATCACCTCCACAGCCTCGCCGTTCGCGAG
CACGAAGCGAATCACGACAGCTGCAGAGCTGAGCCTACCCGAAACGCTTG
CGGTGATGGACGAGGCGACGGAGCTCCCGCCCTTCGGATTTAACATCGGG
ATACTGGAGCAGCGGTTGGAGCGACGCCTTGGGTTTGAAGTCGCCAAGAG
GCCTTACAATTCTTCATTTTCCCAGTGTAGAATTTTCAAGGGGGGTATAC
TTGAACAGGCGCTCAACATGGCAGATCGTCATCACTATCCACGGACTGAT
CGAAAAGGGTCGACGGCATGCCGGGAAGGTGCGAGCAGTAGCAGCAGCAG
CAGCAGCACTACTGCCATCATCACCTCCACAGCCTCGCCGTTCGCGAGCA
CGAAGCGAATCACGACAGCTGCAGAGCTGAGCCTACCCGAAACGCTTGCG
GTGATGGACGAGGCGACGGAGCTCCCGCCCTTCGGATTTAACATCGGGAT
ACTGGAGCAGCGGTTGGAGCGACGCCTTGGGTTTGAAGTCGCCAAGTCGG
CAATACACGAGTGCCTGCTGCCGTATTACAATCTGAGAGAGTGGGAAGAG
CGCTACGTGATGACGACGCTGGGCACGGAGATGGAAGATTTCCCGGGCAA
GGGCAGCGGGAACCACCCCTCGGCAATACACGAGTGCCTGCTGCCGTATT
ACAATCTGAGAGAGTGGGAAGAGCGCTACGTGATGACGACGCTGGGCACG
GAGATGGAAGATTTCCCGGGCAAGGGCAGCGGGAACCACCCC
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