mRNA_F-serratus_M_contig785.19101.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig785.19101.1
Unique NamemRNA_F-serratus_M_contig785.19101.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:203244..204254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1011
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19101.1prot_F-serratus_M_contig785.19101.1Fucus serratus malepolypeptideF-serratus_M_contig785 203562..204218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932332.9402115-UTR-F-serratus_M_contig785:203243..2035611622932332.9402115-UTR-F-serratus_M_contig785:203243..203561Fucus serratus maleUTRF-serratus_M_contig785 203244..203561 -
1690964257.8942132-UTR-F-serratus_M_contig785:203243..2035611690964257.8942132-UTR-F-serratus_M_contig785:203243..203561Fucus serratus maleUTRF-serratus_M_contig785 203244..203561 -
1622932333.0109284-UTR-F-serratus_M_contig785:204218..2042541622932333.0109284-UTR-F-serratus_M_contig785:204218..204254Fucus serratus maleUTRF-serratus_M_contig785 204219..204254 -
1690964257.9223864-UTR-F-serratus_M_contig785:204218..2042541690964257.9223864-UTR-F-serratus_M_contig785:204218..204254Fucus serratus maleUTRF-serratus_M_contig785 204219..204254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932332.9570034-CDS-F-serratus_M_contig785:203561..2042181622932332.9570034-CDS-F-serratus_M_contig785:203561..204218Fucus serratus maleCDSF-serratus_M_contig785 203562..204218 -
1690964257.9062626-CDS-F-serratus_M_contig785:203561..2042181690964257.9062626-CDS-F-serratus_M_contig785:203561..204218Fucus serratus maleCDSF-serratus_M_contig785 203562..204218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig785.19101.1

>prot_F-serratus_M_contig785.19101.1 ID=prot_F-serratus_M_contig785.19101.1|Name=mRNA_F-serratus_M_contig785.19101.1|organism=Fucus serratus male|type=polypeptide|length=219bp
MAQGRQIVIVPSAATAQTAQAEPPPCAFPRGLLGAEAEEASRPGFDSGGG
DFGGGCEDVEDGDGRQIDVGSGPVGEVPQGRTRSTAAVGSATFVGFSLKT
PVQTPHRLYQPIAPRFDAGGPPADQQRVWDTPILPSGKSGPVKSTRNRPH
RCQGCGHYKRAVPHYDPKNKGHKAVCNLPESERREPDFINRVRNRYDTSK
PCPCEACTAYIARLPGET*
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mRNA from alignment at F-serratus_M_contig785:203244..204254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig785.19101.1 ID=mRNA_F-serratus_M_contig785.19101.1|Name=mRNA_F-serratus_M_contig785.19101.1|organism=Fucus serratus male|type=mRNA|length=1011bp|location=Sequence derived from alignment at F-serratus_M_contig785:203244..204254- (Fucus serratus male)
GAGGAGGATGGTGATGATGGACACGCTAATTTCGGGATGGCCCAAGGTAG
GCAGATTGTCATCGTTCCAAGCGCAGCAACGGCGCAGACAGCTCAGGCCG
AACCGCCGCCTTGCGCCTTCCCCCGTGGTTTGCTTGGAGCAGAGGCGGAA
GAGGCAAGCAGACCTGGGTTTGACAGCGGAGGTGGTGATTTTGGCGGAGG
GTGTGAAGATGTTGAAGACGGCGATGGGCGCCAAATCGACGTGGGAAGTG
GGCCTGTGGGCGAGGTGCCGCAAGGGAGGACGCGGAGTACAGCTGCGGTT
GGCAGCGCAACGTTCGTTGGTTTTTCTTTAAAAACCCCAGTGCAAACTCC
TCATCGTTTGTACCAGCCTATAGCTCCCAGGTTTGATGCAGGCGGACCAC
CAGCTGATCAGCAGCGTGTCTGGGACACTCCTATCTTGCCATCGGGGAAA
TCTGGCCCTGTCAAGTCTACCCGAAATCGTCCACATCGGTGCCAGGGTTG
TGGCCACTACAAGCGTGCGGTGCCACATTATGACCCAAAGAACAAGGGGC
ATAAAGCAGTGTGCAACCTGCCCGAGAGCGAACGTAGAGAGCCTGACTTC
ATTAATCGCGTGAGGAACCGATACGACACAAGCAAGCCTTGCCCGTGCGA
AGCATGCACGGCGTACATCGCCAGGTTGCCTGGCGAGACATGATGGAAAG
TATTGACGGTTACTGTGGTGGGGGCCGTGGCAGTGGTAATGCTTTTATTA
ATAGTGTCCATGTGTTGTGTGGATGGGATGATAATACTCCAAGTGTCTGA
AGAAAAATTTCAACGCATCAAGGCCTTCTGAGCATCCCCCAGGCAGGGGG
GGAAATGTTTGTTGCTTTTATTTTTGTCGGTGTTGTTGGGTTTTGTTTCC
GCAAATCAAATTATATTTTGTATCGGTACAGCTATAAATTGTCAGATGGC
AAATGAAGTGGTACTAATAAATTAATTGGTAACGCGGGAGGAAAATCAAA
GCAAGAAACGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig785:203244..204254-

>mRNA_F-serratus_M_contig785.19101.1 ID=mRNA_F-serratus_M_contig785.19101.1|Name=mRNA_F-serratus_M_contig785.19101.1|organism=Fucus serratus male|type=CDS|length=1314bp|location=Sequence derived from alignment at F-serratus_M_contig785:203244..204254- (Fucus serratus male)
ATGGCCCAAGGTAGGCAGATTGTCATCGTTCCAAGCGCAGCAACGGCGCA
GACAGCTCAGGCCGAACCGCCGCCTTGCGCCTTCCCCCGTGGTTTGCTTG
GAGCAGAGGCGGAAGAGGCAAGCAGACCTGGGTTTGACAGCGGAGGTGGT
GATTTTGGCGGAGGGTGTGAAGATGTTGAAGACGGCGATGGGCGCCAAAT
CGACGTGGGAAGTGGGCCTGTGGGCGAGGTGCCGCAAGGGAGGACGCGGA
GTACAGCTGCGGTTGGCAGCGCAACGTTCGTTGGTTTTTCTTTAAAAACC
CCAGTGCAAACTCCTCATCGTTTGTACCAGCCTATAGCTCCCAGGTTTGA
TGCAGGCGGACCACCAGCTGATCAGCAGCGTGTCTGGGACACTCCTATCT
TGCCATCGGGGAAATCTGGCCCTGTCAAGTCTACCCGAAATCGTCCACAT
CGGTGCCAGGGTTGTGGCCACTACAAGCGTGCGGTGCCACATTATGACCC
AAAGAACAAGGGGCATAAAGCAGTGTGCAACCTGCCCGAGAGCGAACGTA
GAGAGCCTGACTTCATTAATCGCGTGAGGAACCGATACGACACAAGCAAG
CCTTGCCCGTGCGAAGCATGCACGGCGTACATCGCCAGGTTGCCTGGCGA
GACATGAATGGCCCAAGGTAGGCAGATTGTCATCGTTCCAAGCGCAGCAA
CGGCGCAGACAGCTCAGGCCGAACCGCCGCCTTGCGCCTTCCCCCGTGGT
TTGCTTGGAGCAGAGGCGGAAGAGGCAAGCAGACCTGGGTTTGACAGCGG
AGGTGGTGATTTTGGCGGAGGGTGTGAAGATGTTGAAGACGGCGATGGGC
GCCAAATCGACGTGGGAAGTGGGCCTGTGGGCGAGGTGCCGCAAGGGAGG
ACGCGGAGTACAGCTGCGGTTGGCAGCGCAACGTTCGTTGGTTTTTCTTT
AAAAACCCCAGTGCAAACTCCTCATCGTTTGTACCAGCCTATAGCTCCCA
GGTTTGATGCAGGCGGACCACCAGCTGATCAGCAGCGTGTCTGGGACACT
CCTATCTTGCCATCGGGGAAATCTGGCCCTGTCAAGTCTACCCGAAATCG
TCCACATCGGTGCCAGGGTTGTGGCCACTACAAGCGTGCGGTGCCACATT
ATGACCCAAAGAACAAGGGGCATAAAGCAGTGTGCAACCTGCCCGAGAGC
GAACGTAGAGAGCCTGACTTCATTAATCGCGTGAGGAACCGATACGACAC
AAGCAAGCCTTGCCCGTGCGAAGCATGCACGGCGTACATCGCCAGGTTGC
CTGGCGAGACATGA
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