mRNA_F-serratus_M_contig785.19100.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig785.19100.1
Unique NamemRNA_F-serratus_M_contig785.19100.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig785.19100.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.900e-25
Identity = 72/174 (41.38%), Postives = 96/174 (55.17%), Query Frame = 1 
Query:  292 RKTKQEVRRMSDAHRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTRDELRCIGNWRGDAKLANHGDSLLKTIKEFLEENEVALKGSFPMEDPTELGKEVEFPVGGTQDFEDGHQSIDNDDDASWGGGEVEGAEGESGLPLSCDDESGGSC--SKFFKAPHSG 807
            +K ++ ++RMSD HR   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T +EL  IG+WRG+ KLA HG+SLL  IK ++++N + L+G FP  D  E+ K  EF  GG           DNDD      G                D   G+   SKFF  PHSG
Sbjct:   81 KKKRETLKRMSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ-EI-KPPEFTQGGGMSGISDRDDGDNDDGLPCSFGAGTDXXXXXXXXXXXXDAGYGTTTSSKFFPQPHSG 251
[Close]
BLAST of mRNA_F-serratus_M_contig785.19100.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.490e-23
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:  292 RKTKQEVRRMSDAHRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTRDELRCIGNWRGDAKLANHGDSLLKTIKEFLEENEVALKGSFPMED 600
            +KT++ ++RMSD HR   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T +EL  IG+WRG+ KLA HG+SLL  IK ++++N + L+G FP  D
Sbjct: 1287 KKTRETLKRMSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGD 1388
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE1.900e-2541.38HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI6.490e-2350.49DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:197216..201806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons8
Model size1098
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19100.1prot_F-serratus_M_contig785.19100.1Fucus serratus malepolypeptideF-serratus_M_contig785 198835..201620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932333.8349552-UTR-F-serratus_M_contig785:197215..1973171622932333.8349552-UTR-F-serratus_M_contig785:197215..197317Fucus serratus maleUTRF-serratus_M_contig785 197216..197317 +
1690964258.2695024-UTR-F-serratus_M_contig785:197215..1973171690964258.2695024-UTR-F-serratus_M_contig785:197215..197317Fucus serratus maleUTRF-serratus_M_contig785 197216..197317 +
1622932333.8570645-UTR-F-serratus_M_contig785:197847..1979281622932333.8570645-UTR-F-serratus_M_contig785:197847..197928Fucus serratus maleUTRF-serratus_M_contig785 197848..197928 +
1690964258.279993-UTR-F-serratus_M_contig785:197847..1979281690964258.279993-UTR-F-serratus_M_contig785:197847..197928Fucus serratus maleUTRF-serratus_M_contig785 197848..197928 +
1622932333.87466-UTR-F-serratus_M_contig785:198461..1985921622932333.87466-UTR-F-serratus_M_contig785:198461..198592Fucus serratus maleUTRF-serratus_M_contig785 198462..198592 +
1690964258.2884176-UTR-F-serratus_M_contig785:198461..1985921690964258.2884176-UTR-F-serratus_M_contig785:198461..198592Fucus serratus maleUTRF-serratus_M_contig785 198462..198592 +
1622932333.8950067-UTR-F-serratus_M_contig785:198830..1988341622932333.8950067-UTR-F-serratus_M_contig785:198830..198834Fucus serratus maleUTRF-serratus_M_contig785 198831..198834 +
1690964258.297805-UTR-F-serratus_M_contig785:198830..1988341690964258.297805-UTR-F-serratus_M_contig785:198830..198834Fucus serratus maleUTRF-serratus_M_contig785 198831..198834 +
1622932334.0734286-UTR-F-serratus_M_contig785:201620..2018061622932334.0734286-UTR-F-serratus_M_contig785:201620..201806Fucus serratus maleUTRF-serratus_M_contig785 201621..201806 +
1690964258.3613393-UTR-F-serratus_M_contig785:201620..2018061690964258.3613393-UTR-F-serratus_M_contig785:201620..201806Fucus serratus maleUTRF-serratus_M_contig785 201621..201806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932333.9194353-CDS-F-serratus_M_contig785:198834..1989451622932333.9194353-CDS-F-serratus_M_contig785:198834..198945Fucus serratus maleCDSF-serratus_M_contig785 198835..198945 +
1690964258.307424-CDS-F-serratus_M_contig785:198834..1989451690964258.307424-CDS-F-serratus_M_contig785:198834..198945Fucus serratus maleCDSF-serratus_M_contig785 198835..198945 +
1622932333.942503-CDS-F-serratus_M_contig785:199266..1993331622932333.942503-CDS-F-serratus_M_contig785:199266..199333Fucus serratus maleCDSF-serratus_M_contig785 199267..199333 +
1690964258.3173192-CDS-F-serratus_M_contig785:199266..1993331690964258.3173192-CDS-F-serratus_M_contig785:199266..199333Fucus serratus maleCDSF-serratus_M_contig785 199267..199333 +
1622932333.9772148-CDS-F-serratus_M_contig785:199681..1998031622932333.9772148-CDS-F-serratus_M_contig785:199681..199803Fucus serratus maleCDSF-serratus_M_contig785 199682..199803 +
1690964258.328282-CDS-F-serratus_M_contig785:199681..1998031690964258.328282-CDS-F-serratus_M_contig785:199681..199803Fucus serratus maleCDSF-serratus_M_contig785 199682..199803 +
1622932333.998795-CDS-F-serratus_M_contig785:200494..2005581622932333.998795-CDS-F-serratus_M_contig785:200494..200558Fucus serratus maleCDSF-serratus_M_contig785 200495..200558 +
1690964258.3397708-CDS-F-serratus_M_contig785:200494..2005581690964258.3397708-CDS-F-serratus_M_contig785:200494..200558Fucus serratus maleCDSF-serratus_M_contig785 200495..200558 +
1622932334.0451071-CDS-F-serratus_M_contig785:201390..2016201622932334.0451071-CDS-F-serratus_M_contig785:201390..201620Fucus serratus maleCDSF-serratus_M_contig785 201391..201620 +
1690964258.3501315-CDS-F-serratus_M_contig785:201390..2016201690964258.3501315-CDS-F-serratus_M_contig785:201390..201620Fucus serratus maleCDSF-serratus_M_contig785 201391..201620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig785.19100.1

>prot_F-serratus_M_contig785.19100.1 ID=prot_F-serratus_M_contig785.19100.1|Name=mRNA_F-serratus_M_contig785.19100.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MSDAHRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTRD
ELRCIGNWRGDAKLANHGDSLLKTIKEFLEENEVALKGSFPMEDPTELGK
EVEFPVGGTQDFEDGHQSIDNDDDASWGGGEVEGAEGESGLPLSCDDESG
GSCSKFFKAPHSGARDGARGGGGGAGAGEGLAGDQGLLVHDLLEMTL*
back to top

mRNA from alignment at F-serratus_M_contig785:197216..201806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig785.19100.1 ID=mRNA_F-serratus_M_contig785.19100.1|Name=mRNA_F-serratus_M_contig785.19100.1|organism=Fucus serratus male|type=mRNA|length=4591bp|location=Sequence derived from alignment at F-serratus_M_contig785:197216..201806+ (Fucus serratus male)
CGAGGAGCGAAGAAGCGGGGCGAGGCAGCCGGGACGGGGGGCGCGAACGC
TGGGAGGGAGGAGGAAAGGGTGAAATCTTCGACTACGCCGACGCCTCGCA
AGGTATCAAAGGGTCGACGGGCTCGCAGCGGATCGATCTCTCTCTGATTG
ACGGGTTTTATGTGTCGTTATACAGTCCTTCGATACGCGAGTGGAAATAT
CGACGAGGGCGCCTAGGATATTTTGATAGTATCCAGTCAAGCTTCGTTGT
GGTGCAGGGTCACACGTGTTTCTATTTTGGAGATGTCGCTTTTTTCGAGT
ATTTCTTGCACCATTTCCGCTTTCTCTTTGTATGGAGAGTACGTCGTACG
TTCTTTCCTTCCGAATGGTGTTTTCTACCTTGTGACCACGGGCTGGGTTT
TTTTACATCAGCTTATGTGAGAATTCAATCAATCAATCAAAAAGGGTGCT
GCTTTGCTTCCAAGAGGATGGTCCGGATCCCGAATCTTTCGCGAGCGCCT
TTTGTGCGTGTGTGATTTTTGGGTGTCTTTGGTCTGCCATGGTGGTCTGC
CATGGTGTCTGCCATAGTGGTCCCGGCGGTTGTTCCCCAGTGCTGACTCG
TCTCTTTCCCGCCGCGACGTCGTCCCGTGCAGAGAAAGAGCCCAGGAAGC
TCCCGCGCGGCGCTGTGTGTATCCCCAGACGCCATCAGCGTAGGAAGCAG
CACCAACCCTCAGGTACTGACGGAATGTAAGGGTGTCTGTAAGGTTGGGA
CTGCCTCGTGAGCCGCGGTATCGCGGTGCGCGCCTCAAAATATAGAGCAC
ACCCTTTGGATCATTTTTGTCAGGCACCTTGAATGACAGGGTATATGCTG
TGTGTTTTAGTTAGCGGGGAGGGGATGAAAATCTCTCTCTCGCTTTTCTT
GGCCAAAGAGGCAGCAGCGACGCCTCAAGATTGGAAGGGGGGGGGGGGGG
GGGGGGCACCATAAATCATCCCCTGGGGCTTTACTCTATTGTAGTTTACC
CTGCGGGAGTGTAAACAAGTCCTGGCGCGCTCAGTGGAGAACGTGGCGAG
CATAAGAGCGCGTTTGGTTATCTGGGCCTCTGCTTGTACGTGACGTCGTG
AATCGAAAATGGAGGGAGCATCGGCAGGCGCCGTTGTTTGAAGCGATGCG
TATCTCACCGCCCGTTGCCTTTCGCACGCGATGCTCAAAACCTCGAGAAC
CTGAACTTGGGCTTGGTGTAAATGTCATTGAATCACTTGAACACAGAGCG
AGGTGGAGGCATTCGACAGCGACGAAGACGATGACTTCGAAGCGATCAGC
ATCTCAAGGACCAAGAAATCGAAAACGTCGCTGACGACCCCTCCCGCCTc
CCCCCGGAAGACGAAGCAAGAAGTGAGGTAGGAAGCGGCGTGATCCTGGC
ACTGCGGAGGGGGTACCCCTGGATGGTCTTGGGTGATCCCGGCAGAGCAT
GGGCGTGTCGTGTACCGCTCTTTGGACGCGGCAGTTGTAGCAGCATCTCA
AGCTTTGTCGGTGAATACGCGCGCCCGGGGATAAAGGAGAATGATAGTGA
AGCGTCGGTTGATTGTCTCGCCCGATCTGTGTCTGCAACCCGTGCCCCTT
TTTGTGTTCCCACAGGAGGATGAGCGACGCGCACCGGAAGGCGCTCAAGA
AGGTGCTGGTCAAGTGGCGGGAGAACCGCGTCAACGAGTTCAAGTACACG
CGCTACTTCCACGTCCTTCCCGAGCCCGAGGTACAGCACGGCATCCTCCT
TTGACCCACAAATATTCTTGAGTTATAGGGGGGTAATAAGCCAAGACAAG
GCTTTGAGAGAAGAGAGGAGGCACCTCACCAAGTGGATAGCAGCCATTTG
TCCGTACCCTTGGCTGTGCCTCAACTTACGCGCGTGCATAAATTGCATAA
AACCGTGGCTTATTAGCAGTCAAACCAATCAGCTGCCAAGTACTGAAAGC
ACGGACGACCGTAGGAATACGCGGTGTTCACTGCTGCTGGTTGCCCGGGC
CCCTGACTCCCATCACCCGTGCGGTCGGCTGCCTGCACCCCACGACCACA
GGTCCTGGAGATCATTCACAAGGTCCCCACCACTCGAGACGAGTTGCGCT
GCATCGGAAACTGGAGAGGCAAGAACGGTGGCGCGTAGTGTCTCGCCACG
ACTTATTCCTCTCTCGCACGACGCGTGCATGCCGATCCTCGCTTCATCGT
TCGCGGGGGCGGTTTGCTTGACACCCTCATTTGTCGCACATCCTATCGAT
GTTTTTTCCGGAACGTAGGCGTAAATGCTCGCGACGTGACGGGCGTCAAC
GGGCAACTAAGTTGGGCGCGTGTTCTCTTCGTCATACAGCAGCAGTAACA
GCAAAAACTCCGATCTTGGAGATTTCGAGGGGAGATATAAAGGTTGGGGA
AATGCTCCTCGACTCCCCGGTACACCCGTCTGACGAGCCTCCTCGGGGGT
TGCACCACTTTTTCAGGTGACGCGAAGCTTGCGAACCACGGCGATTCTCT
GCTGAAGACGATCAAGGAGTTTCTGGAAGAGAACGAGGTCGCGCTCAAGG
GGTCCTTCCCGATGGAAGACCCAACAGAACTAGGAAAGGTGGGTTAGTGT
AGCTGAGAAGCTCCCTTGAAACGACCGCTGCACGGTAGACACCGCGGTTC
ACCAGATGTGCGTGACAAAGAAACGTTTACGAGAAATAACCCAGAGTTTG
AATCTCGGGGGAAATAATACACACGCACACACACACACCCATGGCAAAGA
CGGCAAAACGGATAGATAGATAGATCCCCTACAGGGCCAGTGTTGCCGGG
TGGGCGTGGGAGGGAGAGGGGAGTGTTACCGTCGGTGGGGGAAGACTGGT
AACTTGACCAATCACGTTTTATTGCCCTATCGCCAAAAAAGGGAAACACA
AAAATGTAAATAATTTTTTGGGGGCTACGGTCAAATTCATTAGTCTAACC
TGGTGTACATCGGTATCGCTTGCGTGGTTGCTTCCATTTTATCCAATCTG
GCCCGAGGTGTGTGATGCATCGGTCCGTCCGTTCGAGGTGACGACCCACG
GTCGACGGTCGTGACTACACGCCGGAGCTGGCTGCTCCGATCGGGATAAA
ATACGCTTACTGGCCTTTGAATCGCCTCGGGCTAATCAGTCCCTACCGGA
CGTGTATTGTGTGTGTGTAGTTCTAAAATAATGAAGAAACGTCGGGAAAA
AAAATCATGTCCATGTACGATGTTTCTCGGACGCTTTTCGTTCTTTTCCC
GCCGGTCGTGATGATCTCTCATCTCTCAGGAGGTAGAGTTCCCTGTTGGA
GGCACTCAAGACTTCGAGGACGGCCATCAATCCATAGACAATGGTGAGCA
GCGCGACCGTTACCGCGTGGTCGCAGTCGGCGCCCTAGGCAACGGCTCTT
CCAGTACTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAATGCCGTCCTT
CCGTAGAAAACATGGGCTTTACCCACAACGGTTGGTATTCCACCAGTTTC
CTTCCGTACTTGTAGCAGAATACAGGGCTGCGGTTGGCGGTTGGCCTTCT
GCGTACAACATTATTGCTTTTCGATGGGACACACTAATCGACCAGAGCTC
GCAATGTTTTTTTTTGTGTTTTTGATAGTGCCCTCGTCGCCCGGGTGGTC
TAGTAGGTAACCTGCACACCTCCTAGTTCGGAGGTCGTGAGTTCGATTCT
TGGCTAAATCAGGATTTTAATTCTTGCTTCCGTAGCGGAAAGCGTGAAAA
CGTGAGTAGTAGGTAAAGTTCAACCATTGGTTGACGAGTCGTAAGAGTGC
TGAACTTGCATCGCGATAAAAAAAGTCGTGAGGGACACACTAATCGACCA
GAGAGAGCTCGAAATGTTTTCTGTATTTTTAATAGTGACCCCCTCCAATT
TCAGGTGGAACCCACGCTTGAAGCGGCAAAACCGCTTCATTTTAATCGTA
GCGCGCGGAATGAAACGTAAATATCCAAATAAAAAAACATTGTGTTGTGG
AAGGCTCTGCGTTGGCTTTGTGTGCTCTGTGCTCTGCCTGTCTTATCTCG
CCAATTAATAATCTCTCTGTTTGTCTTTGACTTTTTTTTCTATGGGTGTC
TACGATGTGGTATGTGTGTGTGTGTGTGTGTGTAAGCGGTCTGGCCATAT
GCTCCCTCGCGCGCCCCCGTAACAGACGACGATGCTTCTTGGGGAGGCGG
CGAGGTGGAGGGCGCAGAAGGGGAGAGCGGGTTGCCCCTGTCCTGCGACG
ACGAAAGCGGGGGTTCTTGCTCAAAGTTTTTCAAGGCACCGCACAGCGGC
GCTCGTGATGGGGCGAGAGGGGGTGGCGGCGGCGCCGGTGCTGGAGAGGG
CCTCGCGGGCGATCAAGGTCTCCTCGTCCACGACTTGCTCGAGATGACCT
TGTGAAATTAGACGATTGAGTTTGAGGGTACGGTCGGGAATACGCCTTGG
AAGATTGCGCCGACAGAGAAATACCAACCTGTGATCATCGGGGGGATGGA
TCTATTGCGCCATGGCGTGCACCCCGAGCGACATTTTTATGTAACATGCT
TGCCTTGCATTGCCTTGCCGTGACTACAACCACTTCCCGGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig785:197216..201806+

>mRNA_F-serratus_M_contig785.19100.1 ID=mRNA_F-serratus_M_contig785.19100.1|Name=mRNA_F-serratus_M_contig785.19100.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig785:197216..201806+ (Fucus serratus male)
ATGAGCGACGCGCACCGGAAGGCGCTCAAGAAGGTGCTGGTCAAGTGGCG
GGAGAACCGCGTCAACGAGTTCAAGTACACGCGCTACTTCCACGTCCTTC
CCGAGCCCGAGATGAGCGACGCGCACCGGAAGGCGCTCAAGAAGGTGCTG
GTCAAGTGGCGGGAGAACCGCGTCAACGAGTTCAAGTACACGCGCTACTT
CCACGTCCTTCCCGAGCCCGAGGTCCTGGAGATCATTCACAAGGTCCCCA
CCACTCGAGACGAGTTGCGCTGCATCGGAAACTGGAGAGGTCCTGGAGAT
CATTCACAAGGTCCCCACCACTCGAGACGAGTTGCGCTGCATCGGAAACT
GGAGAGGTGACGCGAAGCTTGCGAACCACGGCGATTCTCTGCTGAAGACG
ATCAAGGAGTTTCTGGAAGAGAACGAGGTCGCGCTCAAGGGGTCCTTCCC
GATGGAAGACCCAACAGAACTAGGAAAGGTGACGCGAAGCTTGCGAACCA
CGGCGATTCTCTGCTGAAGACGATCAAGGAGTTTCTGGAAGAGAACGAGG
TCGCGCTCAAGGGGTCCTTCCCGATGGAAGACCCAACAGAACTAGGAAAG
GAGGTAGAGTTCCCTGTTGGAGGCACTCAAGACTTCGAGGACGGCCATCA
ATCCATAGACAATGGAGGTAGAGTTCCCTGTTGGAGGCACTCAAGACTTC
GAGGACGGCCATCAATCCATAGACAATGACGACGATGCTTCTTGGGGAGG
CGGCGAGGTGGAGGGCGCAGAAGGGGAGAGCGGGTTGCCCCTGTCCTGCG
ACGACGAAAGCGGGGGTTCTTGCTCAAAGTTTTTCAAGGCACCGCACAGC
GGCGCTCGTGATGGGGCGAGAGGGGGTGGCGGCGGCGCCGGTGCTGGAGA
GGGCCTCGCGGGCGATCAAGGTCTCCTCGTCCACGACTTGCTCGAGATGA
CCTTGTGAACGACGATGCTTCTTGGGGAGGCGGCGAGGTGGAGGGCGCAG
AAGGGGAGAGCGGGTTGCCCCTGTCCTGCGACGACGAAAGCGGGGGTTCT
TGCTCAAAGTTTTTCAAGGCACCGCACAGCGGCGCTCGTGATGGGGCGAG
AGGGGGTGGCGGCGGCGCCGGTGCTGGAGAGGGCCTCGCGGGCGATCAAG
GTCTCCTCGTCCACGACTTGCTCGAGATGACCTTGTGA
back to top