mRNA_F-serratus_M_contig785.19099.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig785.19099.1
Unique NamemRNA_F-serratus_M_contig785.19099.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig785.19099.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.310e-5
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 2 
Query:  236 MKQNLQQQLERLEKGNAASPGGTRQKALFAGLLEDVGGP 352
            MK NL+ QLE+LEK NAASPGG R K LFAGLL   G P
Sbjct:    1 MKDNLKLQLEKLEKDNAASPGGRRNKGLFAGLLGIDGAP 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR28_ECTSI2.310e-569.23DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:180581..181408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size363
Cds size135
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19099.1prot_F-serratus_M_contig785.19099.1Fucus serratus malepolypeptideF-serratus_M_contig785 180807..181408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932333.7291121-UTR-F-serratus_M_contig785:180580..1808061622932333.7291121-UTR-F-serratus_M_contig785:180580..180806Fucus serratus maleUTRF-serratus_M_contig785 180581..180806 +
1690964258.2068572-UTR-F-serratus_M_contig785:180580..1808061690964258.2068572-UTR-F-serratus_M_contig785:180580..180806Fucus serratus maleUTRF-serratus_M_contig785 180581..180806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932333.7555451-CDS-F-serratus_M_contig785:180806..1808571622932333.7555451-CDS-F-serratus_M_contig785:180806..180857Fucus serratus maleCDSF-serratus_M_contig785 180807..180857 +
1690964258.2231674-CDS-F-serratus_M_contig785:180806..1808571690964258.2231674-CDS-F-serratus_M_contig785:180806..180857Fucus serratus maleCDSF-serratus_M_contig785 180807..180857 +
1622932333.776368-CDS-F-serratus_M_contig785:181324..1814081622932333.776368-CDS-F-serratus_M_contig785:181324..181408Fucus serratus maleCDSF-serratus_M_contig785 181325..181408 +
1690964258.2469115-CDS-F-serratus_M_contig785:181324..1814081690964258.2469115-CDS-F-serratus_M_contig785:181324..181408Fucus serratus maleCDSF-serratus_M_contig785 181325..181408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig785.19099.1

>prot_F-serratus_M_contig785.19099.1 ID=prot_F-serratus_M_contig785.19099.1|Name=mRNA_F-serratus_M_contig785.19099.1|organism=Fucus serratus male|type=polypeptide|length=45bp
MPAMKQNLQQQLERLEKGNAASPGGTRQKALFAGLLEDVGGPLPL
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mRNA from alignment at F-serratus_M_contig785:180581..181408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig785.19099.1 ID=mRNA_F-serratus_M_contig785.19099.1|Name=mRNA_F-serratus_M_contig785.19099.1|organism=Fucus serratus male|type=mRNA|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig785:180581..181408+ (Fucus serratus male)
AGGAGCATTTGGGGAACGCATATTCGGAGGGGTCTCCAGGAGGAAAAAGG
CAGTTCTTGATCGGCGAGAGGAGAGGCGTGAAGGTTGGAGCTGTGGGGAA
CGGTGCGCACGCTTGAGCTGATATCGTTCACCGTACACGCGAGCACCGCC
AACCCCATCGAGATTCCACGGCCACCACGCCTGCTGCGGCCTCCAGGAAA
GACGAGAAGAATCGTGTGGAACAATCATGCCTGCCATGAAGCAAAACCTC
CAGCAGCAGCTTGAAAGGCTTGAAAAGGTGCGATGCAATTGTTGCAGGAG
AAAAGGCGCTCATCTCAGGGAGGGTGAGAGTGCTGTGACGCATGGTAGAT
GATTATGTTGTTCGATCTCGAGCTGCTTACGCTAGATTACACCGTCGGCA
TAACTTCCACGTTTACGCCGCGTCGTGCGCGCTACTTCGAAGTACCCTAC
CTGTGTGCTTTTTGGCACTACGGTAAATGCTGTAAACGGTGTATGTATGT
TTACCTAGTGCTACACACGCTTGAGTTCTCCCTGCGGTCCTTTGATTGTA
ATATATGCCACCGTCGTGTCAGAGCGAACGAGCCAACTAGATTATAGTGC
TATACTTTGAGGCCTCGTTAGTATGAGGTTGATCGCTGGAACCACGTGTG
TTGATTTTCGCGCGGTTTCCCGTCACCACCGCCACCGCTACACCGCCCTC
TCCTTTCCTGTGCTCCATCCCACCGCCGCGGCTGAGACGATCAGGGGAAC
GCCGCGAGTCCCGGAGGTACCCGTCAAAAAGCTCTCTTCGCGGGGCTGCT
TGAGGACGTAGGTGGCCCGCTGCCACTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig785:180581..181408+

>mRNA_F-serratus_M_contig785.19099.1 ID=mRNA_F-serratus_M_contig785.19099.1|Name=mRNA_F-serratus_M_contig785.19099.1|organism=Fucus serratus male|type=CDS|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig785:180581..181408+ (Fucus serratus male)
ATGCCTGCCATGAAGCAAAACCTCCAGCAGCAGCTTGAAAGGCTTGAAAA
GATGCCTGCCATGAAGCAAAACCTCCAGCAGCAGCTTGAAAGGCTTGAAA
AGGGGAACGCCGCGAGTCCCGGAGGTACCCGTCAAAAAGCTCTCTTCGCG
GGGCTGCTTGAGGACGTAGGTGGCCCGCTGCCACTCGGGAACGCCGCGAG
TCCCGGAGGTACCCGTCAAAAAGCTCTCTTCGCGGGGCTGCTTGAGGACG
TAGGTGGCCCGCTGCCACTC
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