mRNA_F-serratus_M_contig783.19076.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig783.19076.1
Unique NamemRNA_F-serratus_M_contig783.19076.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig783.19076.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.260e-17
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 2 
Query:   14 SPDFLPHNRISNLMHRGRRGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIAELKYIFRQCFRRGSGIASYSTKKDLVQCLTRLWESSSGRG 295
            +P F   NRISNLM R  RGKM   GSP+ GD+ +L+ AL    I  LSSK+ A+LK I+  CF    GI+ +  K  LVQC   LW S  G G
Sbjct:  131 APTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGG 224
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig783.19076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH0_ECTSI2.260e-1747.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig783contigF-serratus_M_contig783:256363..256924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932328.8424695-CDS-F-serratus_M_contig783:256362..2564311622932328.8424695-CDS-F-serratus_M_contig783:256362..256431Fucus serratus maleCDSF-serratus_M_contig783 256363..256431 -
1690964255.7812872-CDS-F-serratus_M_contig783:256362..2564311690964255.7812872-CDS-F-serratus_M_contig783:256362..256431Fucus serratus maleCDSF-serratus_M_contig783 256363..256431 -
1622932328.859262-CDS-F-serratus_M_contig783:256696..2569241622932328.859262-CDS-F-serratus_M_contig783:256696..256924Fucus serratus maleCDSF-serratus_M_contig783 256697..256924 -
1690964255.793849-CDS-F-serratus_M_contig783:256696..2569241690964255.793849-CDS-F-serratus_M_contig783:256696..256924Fucus serratus maleCDSF-serratus_M_contig783 256697..256924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig783.19076.1prot_F-serratus_M_contig783.19076.1Fucus serratus malepolypeptideF-serratus_M_contig783 256363..256924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig783.19076.1

>prot_F-serratus_M_contig783.19076.1 ID=prot_F-serratus_M_contig783.19076.1|Name=mRNA_F-serratus_M_contig783.19076.1|organism=Fucus serratus male|type=polypeptide|length=99bp
SYLRLSRLSPPQPHIELDAPGAKRENAASRFSRRRRREPALARTRRERHR
GPFKQDHRRAQVYLQTMLPPWKRNRQLFHQKRSRPVLDTPLGVFERKG*
back to top

mRNA from alignment at F-serratus_M_contig783:256363..256924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig783.19076.1 ID=mRNA_F-serratus_M_contig783.19076.1|Name=mRNA_F-serratus_M_contig783.19076.1|organism=Fucus serratus male|type=mRNA|length=562bp|location=Sequence derived from alignment at F-serratus_M_contig783:256363..256924- (Fucus serratus male)
TCATATCTGAGGCTCTCCCGACTTTCTCCCCCACAACCGCATATCGAACT
TGATGCACCGGGGGCGAAGAGGGAAAATGCCGCCTCGAGGTTCTCCCGAA
GACGGAGACGTGAACCAGCTCTTGCTCGCACTCGACGGGAGCGGCATCGA
GGCCCTTTCAAGCAAGACCATCGCCGAGCTCAAGTATATCTTCAGACAAT
GCTTCCGCCGTGGAAGCGGAATCGCCAGGTCAGTATTTTGATGATACATG
ATGCGGATGCGTAGAATAGTGTCGTACACTTCACAGCACGGGCATCGAGG
CCCTTTCAGGCAAGACCATCGCCGACCTCAAGTATATATTCAGACAATGC
TTCCGCAGTGGAAGCGGAATCGCCAGGTCAGTATTTTGATGATGACCTGA
TCGAGATACATGAGGCGGACGCGTAGAATAGTGTCGTACACTTCACAGCA
CGGTTGCACGTTTACCTTATGCAGACGCTCGGCGCCTTTACAGCTATTCC
ACCAAAAAAGATCTCGTCCAGTGCTTGACACGCCTCTGGGAGTCTTCGAG
CGGAAGGGGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig783:256363..256924-

>mRNA_F-serratus_M_contig783.19076.1 ID=mRNA_F-serratus_M_contig783.19076.1|Name=mRNA_F-serratus_M_contig783.19076.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig783:256363..256924- (Fucus serratus male)
TCATATCTGAGGCTCTCCCGACTTTCTCCCCCACAACCGCATATCGAACT
TGATGCACCGGGGGCGAAGAGGGAAAATGCCGCCTCGAGGTTCTCCCGAA
GACGGAGACGTGAACCAGCTCTTGCTCGCACTCGACGGGAGCGGCATCGA
GGCCCTTTCAAGCAAGACCATCGCCGAGCTCAAGTATATCTTCAGACAAT
GCTTCCGCCGTGGAAGCGGAATCGCCAGTCATATCTGAGGCTCTCCCGAC
TTTCTCCCCCACAACCGCATATCGAACTTGATGCACCGGGGGCGAAGAGG
GAAAATGCCGCCTCGAGGTTCTCCCGAAGACGGAGACGTGAACCAGCTCT
TGCTCGCACTCGACGGGAGCGGCATCGAGGCCCTTTCAAGCAAGACCATC
GCCGAGCTCAAGTATATCTTCAGACAATGCTTCCGCCGTGGAAGCGGAAT
CGCCAGCTATTCCACCAAAAAAGATCTCGTCCAGTGCTTGACACGCCTCT
GGGAGTCTTCGAGCGGAAGGGGTGACTATTCCACCAAAAAAGATCTCGTC
CAGTGCTTGACACGCCTCTGGGAGTCTTCGAGCGGAAGGGGTGA
back to top