mRNA_F-serratus_M_contig7829.19075.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7829.19075.1
Unique NamemRNA_F-serratus_M_contig7829.19075.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: D8LIK1_ECTSI (Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIK1_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.960e-64
Identity = 95/121 (78.51%), Postives = 109/121 (90.08%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRMVTTLDY 363
            RNFSESYQAFSYV DV+TFSM+DK+SNQV+GS AMWAAQGKIKKKY+IDDEREAL++A+K WTDAL    GPF GGD+PNLGD CVFGCI+AIEGL+THKDVL+R+GV  WYQ MV+TLDY
Sbjct:  146 RNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDY 266          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A835YKS9_9STRA (Prostaglandin E synthase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.160e-44
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSRE-GVAPWYQRMVTTLDY 363
            R+F ESYQAFSYVQ V TFS LDK +NQ LGS AMW AQGKIKKKY+I+DEREALY AL+ WT  ++  K  F GG  PNLGD CVFGC++AIEGL+ H + +  E  +A WY RM+  L Y
Sbjct:  156 RSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKK--FSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQY 275          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: L1I519_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I519_GUITC)

HSP 1 Score: 136 bits (343), Expect = 7.460e-39
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRM 345
            R+FSESY+AFSYVQ+V TFS+LDK SN V G+TAMW AQGK+KKKY I+DER AL ++L  W DAL++    F+GG  PNL D CVFG ++A++G  T K V+    VA WY+RM
Sbjct:   22 RSFSESYEAFSYVQEVPTFSLLDKYSNHVAGATAMWLAQGKLKKKYKIEDERAALASSLSKWADALDNKL--FLGGSSPNLADLCVFGVLRAVDGSATQK-VIEDSPVADWYKRM 133          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A7S0MFA7_9CRYP (Prostaglandin E synthase 2 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFA7_9CRYP)

HSP 1 Score: 141 bits (355), Expect = 7.770e-39
Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRM 345
            R  SESYQAF YV  V  FS LDK+SN++ GS AMW AQGKIKKKY I DER AL A+L  WTDA+  GK  F+GG  PNL D CVFG +++IEGL TH  VL    V PWY+RM
Sbjct:  179 RTLSESYQAFGYVDSVPHFSFLDKVSNRMAGSLAMWLAQGKIKKKYGITDERAALRASLDRWTDAI--GKSDFLGGASPNLADLCVFGTLRSIEGLETHAIVLRETQVGPWYERM 291          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: W7TEG9_9STRA (Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEG9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.030e-37
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRM 345
            R+F ES+QAFSYV +V  FS LDK+SNQ +G+TAMWAAQGKIKKKY+I DER AL+ AL+ WT   E G+ PF+GG +PN+GD  V+ CI AIEGL+  KD+++   ++ WY R+
Sbjct:  273 RSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWT--REVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRV 385          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A0M0JG54_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JG54_9EUKA)

HSP 1 Score: 135 bits (340), Expect = 8.100e-37
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKG--PFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRM 345
            R+FSESYQAF YV  V  FSMLDK+SNQ++GS  MW AQGKIKKKY IDDER A+ A +  W   L  G G  PF GG +PN  D CVFGC+KAI+  + +K++++   + PWY R+
Sbjct:  157 RSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHW---LNEGVGSKPFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAETAIKPWYDRV 270          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A7S1XY88_9STRA (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY88_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.340e-36
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPW 333
            RN++ESYQAFSYV DV TFS +DKMSN  +GSTAMW AQGK+KKKY I+DER+AL++A+  + +AL  G   F+GG  PN+GD  VFG I+AIEG++   D+ S   + PW
Sbjct:  127 RNWNESYQAFSYVNDVPTFSSMDKMSNLAIGSTAMWLAQGKLKKKYGIEDERDALFSAVTKFEEAL--GDNAFLGGANPNMGDIAVFGVIRAIEGMDAFNDLQSETKIGPW 235          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A7S0HU74_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HU74_9CRYP)

HSP 1 Score: 135 bits (339), Expect = 1.380e-36
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRM 345
            R FSES+QAFSYVQ V TFS+LDK+SN V G+TAMW AQGK+K KY I DER+AL  AL  W DAL+  + PF+GG  PNL D CVFG ++A++G  T + V+    V+ WY RM
Sbjct:  164 RTFSESFQAFSYVQQVPTFSLLDKLSNHVAGATAMWLAQGKLKSKYKISDERQALALALAKWADALD--RKPFLGGSSPNLADLCVFGVLRAVDGSAT-QTVIEESPVSDWYGRM 275          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A7S0IJQ6_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IJQ6_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 2.510e-34
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGP--FMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRM 345
            R F+ES+QAF YV  V  FSM+DK+SNQV+G+ AMW AQGKIKKKY IDDE  A+  A+  W   L+ G G   F GG KP+LGD  V+GC+KAI+  +T  ++++  GV PWY+RM
Sbjct:  167 RTFAESFQAFGYVMQVPHFSMVDKLSNQVVGAFAMWMAQGKIKKKYAIDDEAAAVREAIAHW---LKEGVGEASFAGGQKPHLGDVAVYGCLKAIDRTSTFSEIMAETGVKPWYERM 280          
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Match: A0A7S2C557_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C557_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 2.720e-33
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDDEREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHKDVLSREGVAPWYQRMVTTLD 360
            R F E+Y+AF YV  V  FS LDK +NQ +GS  MW AQGKIKKKY IDDEREA  + +  W      G  PF GG++PNL D  VFG +KAI+    H D+++   VAPWY+RM+  ++
Sbjct:  182 RTFGEAYEAFGYVWGVPHFSQLDKAANQAIGSFFMWMAQGKIKKKYGIDDEREAFVSGVNKWMSEAV-GTTPFAGGERPNLADVAVFGLLKAIDRTAAHSDIMAATSVAPWYERMLEAVE 300          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7829.19075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK1_ECTSI1.960e-6478.51Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxI... [more]
A0A835YKS9_9STRA6.160e-4462.30Prostaglandin E synthase 2 n=1 Tax=Tribonema minus... [more]
L1I519_GUITC7.460e-3959.13Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0MFA7_9CRYP7.770e-3961.74Prostaglandin E synthase 2 n=1 Tax=Cryptomonas cur... [more]
W7TEG9_9STRA4.030e-3758.26Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae... [more]
A0A0M0JG54_9EUKA8.100e-3755.56Prostaglandin E synthase 2 n=1 Tax=Chrysochromulin... [more]
A0A7S1XY88_9STRA1.340e-3657.66Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phae... [more]
A0A7S0HU74_9CRYP1.380e-3658.26Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0IJQ6_9EUKA2.510e-3454.70Prostaglandin E synthase 2 n=1 Tax=Calcidiscus lep... [more]
A0A7S2C557_9EUKA2.720e-3350.83Prostaglandin E synthase 2 n=1 Tax=Haptolina brevi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7829contigF-serratus_M_contig7829:4215..5509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue1.9e-51
Seed eggNOG ortholog2880.D8LIK1
KEGG rclassRC00672
KEGG koko:K05309
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3029@1,KOG3029@2759
EC5.3.99.3
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size366
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7829.19075.1prot_F-serratus_M_contig7829.19075.1Fucus serratus malepolypeptideF-serratus_M_contig7829 4215..5509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932328.7530138-CDS-F-serratus_M_contig7829:4214..42381622932328.7530138-CDS-F-serratus_M_contig7829:4214..4238Fucus serratus maleCDSF-serratus_M_contig7829 4215..4238 +
1690964255.7435386-CDS-F-serratus_M_contig7829:4214..42381690964255.7435386-CDS-F-serratus_M_contig7829:4214..4238Fucus serratus maleCDSF-serratus_M_contig7829 4215..4238 +
1622932328.7726765-CDS-F-serratus_M_contig7829:4668..47281622932328.7726765-CDS-F-serratus_M_contig7829:4668..4728Fucus serratus maleCDSF-serratus_M_contig7829 4669..4728 +
1690964255.7613406-CDS-F-serratus_M_contig7829:4668..47281690964255.7613406-CDS-F-serratus_M_contig7829:4668..4728Fucus serratus maleCDSF-serratus_M_contig7829 4669..4728 +
1622932328.791522-CDS-F-serratus_M_contig7829:5227..55091622932328.791522-CDS-F-serratus_M_contig7829:5227..5509Fucus serratus maleCDSF-serratus_M_contig7829 5228..5509 +
1690964255.7710474-CDS-F-serratus_M_contig7829:5227..55091690964255.7710474-CDS-F-serratus_M_contig7829:5227..5509Fucus serratus maleCDSF-serratus_M_contig7829 5228..5509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7829.19075.1

>prot_F-serratus_M_contig7829.19075.1 ID=prot_F-serratus_M_contig7829.19075.1|Name=mRNA_F-serratus_M_contig7829.19075.1|organism=Fucus serratus male|type=polypeptide|length=122bp
RNFSESYQAFSYVQDVETFSMLDKMSNQVLGSTAMWAAQGKIKKKYDIDD
EREALYAALKAWTDALESGKGPFMGGDKPNLGDFCVFGCIKAIEGLNTHK
DVLSREGVAPWYQRMVTTLDY*
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mRNA from alignment at F-serratus_M_contig7829:4215..5509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7829.19075.1 ID=mRNA_F-serratus_M_contig7829.19075.1|Name=mRNA_F-serratus_M_contig7829.19075.1|organism=Fucus serratus male|type=mRNA|length=1295bp|location=Sequence derived from alignment at F-serratus_M_contig7829:4215..5509+ (Fucus serratus male)
AGAAATTTCTCGGAATCTTACCAGGTGTGCGGGCCAATCACGTCGAATCT CAGTGCCGAAAACATTAAAAGAGAGCACCCCACCGATTGCTTTCAAGACA CTCGGAGTCCTGAATCCTTAAAAAACGTTTTCTCTCTTACACAAAGTTCT GGAGGGTTAATCTTGGCAGTGGTTTGAGATGAGAGGCGGTAAGGCTCAAA ACGATCTTAGACCTAGCCCCGAAATCCTGAGGTGTTGATGCATCCCACCA AACCATGACGCTCCATCGGTAGGGTGCGCTTGTTACTGAGACAACCTCTA ATGCAAGCGACTTTCTGAAAGACCCATTCGGGCAACTCGTTTTTCAGGTC TCCTCCCGAGCCTCGAGCCTCGGTGGCTGTGGATTAACCGCTTACGAGTA GTTTCGCCTCGTAACCTCTTGTGACCGTCGCCCGTCGCGCGATCTTCTAC GCAGGCGTTTTCGTACGTGCAAGACGTCGAAACGTTCAGTATGCTGGATA AGATGTCGAATCAGGTAAAAAAAAACTCAGATTTGCGACAAACCCACTTG TGTCCATTCCCTTGTTAGGTTTGTCTCTAATTCTGGAGAGAAAAAACGGG AAGATTTTGCCCTTAATTCATTTACGGTTTATTTTTTCCCCCTACACACG ATTCACACGCAAGGATCGGGAATCAACCTGGACTGAAATCGAGGACAGCA AATCAGACTACAGTACATTGTTCTAGATTGCCTGAACTGCCGAGCAACGG ACTGTATCGCAAGTGCTCCTTGTCCGTGAATATTAGTGAAAATAACTGGA GGAGGCGTGTCGCTTGCAAACCTTCGCCTGTCGGCTGCTTACACTCGACA AAATATTTGGGGTATCGATCGGCTGCCCGAACTCCCCGCTCCTTCATCGC CACATTGCGTCGTAGAAAACTCCAATTTCGTTGTCGTCGCACACACTTTC CGAGCCCCCGGCGCAGTATCTGACGACGGCAGGAAAACGCACGTACAAAC GAACCATTAATAGGTGCTGGGATCGACAGCCATGTGGGCGGCTCAGGGCA AGATTAAGAAGAAGTACGACATCGACGATGAGCGAGAGGCACTGTACGCC GCGCTGAAGGCCTGGACCGACGCGCTCGAGAGCGGGAAGGGCCCTTTCAT GGGGGGGGACAAGCCAAACCTCGGCGACTTTTGCGTGTTCGGGTGCATCA AGGCCATCGAGGGGCTAAATACGCACAAGGACGTTCTCTCCAGGGAAGGG GTTGCGCCGTGGTACCAGCGGATGGTGACCACGCTGGATTATTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7829:4215..5509+

>mRNA_F-serratus_M_contig7829.19075.1 ID=mRNA_F-serratus_M_contig7829.19075.1|Name=mRNA_F-serratus_M_contig7829.19075.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig7829:4215..5509+ (Fucus serratus male)
AGAAATTTCTCGGAATCTTACCAGAGAAATTTCTCGGAATCTTACCAGGC
GTTTTCGTACGTGCAAGACGTCGAAACGTTCAGTATGCTGGATAAGATGT
CGAATCAGGCGTTTTCGTACGTGCAAGACGTCGAAACGTTCAGTATGCTG
GATAAGATGTCGAATCAGGTGCTGGGATCGACAGCCATGTGGGCGGCTCA
GGGCAAGATTAAGAAGAAGTACGACATCGACGATGAGCGAGAGGCACTGT
ACGCCGCGCTGAAGGCCTGGACCGACGCGCTCGAGAGCGGGAAGGGCCCT
TTCATGGGGGGGGACAAGCCAAACCTCGGCGACTTTTGCGTGTTCGGGTG
CATCAAGGCCATCGAGGGGCTAAATACGCACAAGGACGTTCTCTCCAGGG
AAGGGGTTGCGCCGTGGTACCAGCGGATGGTGACCACGCTGGATTATTGA
GTGCTGGGATCGACAGCCATGTGGGCGGCTCAGGGCAAGATTAAGAAGAA
GTACGACATCGACGATGAGCGAGAGGCACTGTACGCCGCGCTGAAGGCCT
GGACCGACGCGCTCGAGAGCGGGAAGGGCCCTTTCATGGGGGGGGACAAG
CCAAACCTCGGCGACTTTTGCGTGTTCGGGTGCATCAAGGCCATCGAGGG
GCTAAATACGCACAAGGACGTTCTCTCCAGGGAAGGGGTTGCGCCGTGGT
ACCAGCGGATGGTGACCACGCTGGATTATTGA
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