mRNA_F-serratus_M_contig7807.19064.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7807.19064.1
Unique NamemRNA_F-serratus_M_contig7807.19064.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7807.19064.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.300e-5
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:   82 VGVCLTQPCVLDDGFFLEGGSRIL 153
            VGVCLT+PCVLD GFFLEGG R+L
Sbjct: 1052 VGVCLTEPCVLDVGFFLEGGHRVL 1075
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BLAST of mRNA_F-serratus_M_contig7807.19064.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 4.310e-5
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:   82 VGVCLTQPCVLDDGFFLEGGSRIL 153
            VGVCLT+PCVLD GFFLEGG R+L
Sbjct: 1184 VGVCLTEPCVLDVGFFLEGGHRVL 1207
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7807.19064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN1_9PHAE4.300e-583.33CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LI57_ECTSI4.310e-583.33CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7807contigF-serratus_M_contig7807:9687..10141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.3462477-CDS-F-serratus_M_contig7807:9686..97671622932326.3462477-CDS-F-serratus_M_contig7807:9686..9767Fucus serratus maleCDSF-serratus_M_contig7807 9687..9767 +
1690964254.4909115-CDS-F-serratus_M_contig7807:9686..97671690964254.4909115-CDS-F-serratus_M_contig7807:9686..9767Fucus serratus maleCDSF-serratus_M_contig7807 9687..9767 +
1622932326.3766034-CDS-F-serratus_M_contig7807:10059..101401622932326.3766034-CDS-F-serratus_M_contig7807:10059..10140Fucus serratus maleCDSF-serratus_M_contig7807 10060..10140 +
1690964254.5021062-CDS-F-serratus_M_contig7807:10059..101401690964254.5021062-CDS-F-serratus_M_contig7807:10059..10140Fucus serratus maleCDSF-serratus_M_contig7807 10060..10140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7807.19064.1prot_F-serratus_M_contig7807.19064.1Fucus serratus malepolypeptideF-serratus_M_contig7807 9687..10140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7807.19064.1

>prot_F-serratus_M_contig7807.19064.1 ID=prot_F-serratus_M_contig7807.19064.1|Name=mRNA_F-serratus_M_contig7807.19064.1|organism=Fucus serratus male|type=polypeptide|length=54bp
RGDRRDGLLRLLVTYLAAAPLARSVHEVGVCLTQPCVLDDGFFLEGGSRI
LALA
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mRNA from alignment at F-serratus_M_contig7807:9687..10141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7807.19064.1 ID=mRNA_F-serratus_M_contig7807.19064.1|Name=mRNA_F-serratus_M_contig7807.19064.1|organism=Fucus serratus male|type=mRNA|length=455bp|location=Sequence derived from alignment at F-serratus_M_contig7807:9687..10141+ (Fucus serratus male)
CGTGGTGATCGTCGTGATGGGTTACTGCGACTGCTTGTTACATATCTTGC
AGCAGCTCCGCTCGCTCGCTCGGTGCACGAGGTATGGAGTTTTTCCGACT
TGTTAACAACACCTTTGTTCATTTCGCGTGCATTTTAACAGCGTTAACAT
CTTGGTTAAATTGAATGGTACCACGCAAATGCTTCTGGTTGGGCACCCCA
AGAGTATAATAAAAGAATGCGGACAAAAATGCATGCTTGAGCTACATCAA
CCCAGAACCCCCGAGGCTCTTCTTATCTCGTCTCACCGCAGCCGTCGATC
GAACCGAACTCCCAACCAACTTACCACCGTCCACCACCTCCAAATATTTC
CCCATCGCCTTTAACGGTAAAAGGTTGGAGTCTGTCTGACGCAGCCGTGC
GTGCTGGACGACGGATTCTTCCTCGAGGGCGGTTCTCGTATTCTGGCCCT
CGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7807:9687..10141+

>mRNA_F-serratus_M_contig7807.19064.1 ID=mRNA_F-serratus_M_contig7807.19064.1|Name=mRNA_F-serratus_M_contig7807.19064.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig7807:9687..10141+ (Fucus serratus male)
CGTGGTGATCGTCGTGATGGGTTACTGCGACTGCTTGTTACATATCTTGC
AGCAGCTCCGCTCGCTCGCTCGGTGCACGAGCGTGGTGATCGTCGTGATG
GGTTACTGCGACTGCTTGTTACATATCTTGCAGCAGCTCCGCTCGCTCGC
TCGGTGCACGAGGTTGGAGTCTGTCTGACGCAGCCGTGCGTGCTGGACGA
CGGATTCTTCCTCGAGGGCGGTTCTCGTATTCTGGCCCTCGCCGTTGGAG
TCTGTCTGACGCAGCCGTGCGTGCTGGACGACGGATTCTTCCTCGAGGGC
GGTTCTCGTATTCTGGCCCTCGCC
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