mRNA_F-serratus_M_contig7801.19061.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7801.19061.1
Unique NamemRNA_F-serratus_M_contig7801.19061.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: A0A8K0NUE5_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NUE5_LADFU)

HSP 1 Score: 53.5 bits (127), Expect = 3.490e-6
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   64 IKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMN-DVKEAVSKLGNGKAVG-------FRRCL 300
            IK+ASG+++R+   +  RWKE+F +LLN ++P L     DG E       LA +     +VK A+ K+ NGKAVG        R+CL
Sbjct:  118 IKDASGVIIREDGDVRKRWKEYFHKLLNEENPRLRNEEGDGNE-------LAVQDMSRVEVKAALKKVKNGKAVGADQIPVEIRKCL 197          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: A0A3B3HUN9_ORYLA (Reverse transcriptase domain-containing protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3HUN9_ORYLA)

HSP 1 Score: 52.0 bits (123), Expect = 1.670e-5
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   28 ELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            ++ G R   +  +++ SG LL   PSI  RW E F ELLN  + T+DAS++D IEQLP    L    T  ++  A+     GK+ G
Sbjct:  189 KIYGPRSKTTHPVRSKSGALLTSTPSIKGRWVEHFSELLNQPT-TVDASLIDDIEQLPTDVSLDLPITEEELDIALKNTKLGKSPG 273          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: UPI001F5F87EB (uncharacterized protein LOC124805420 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F87EB)

HSP 1 Score: 51.6 bits (122), Expect = 1.730e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   61 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  D  E L    P   EP++ ++KE++ KL   KA G
Sbjct:  147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPG 218          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: UPI001F5E8EE8 (uncharacterized protein LOC124719790 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E8EE8)

HSP 1 Score: 51.6 bits (122), Expect = 1.790e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   61 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  D  E L    P   EP++ ++KE++ KL   KA G
Sbjct:  147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPG 218          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: UPI001F5F24CA (uncharacterized protein LOC124777988 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F24CA)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   61 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  D  E L    P   EP++ ++KE++ KL   KA G
Sbjct:  147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPG 218          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: UPI001F5FE6C3 (uncharacterized protein LOC124795698 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5FE6C3)

HSP 1 Score: 51.6 bits (122), Expect = 2.060e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   61 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  D  E L    P   EP++ ++KE++ KL   KA G
Sbjct:  196 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPG 267          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: UPI001F5F0EE2 (uncharacterized protein LOC124719631 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F0EE2)

HSP 1 Score: 51.6 bits (122), Expect = 2.300e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   61 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  D  E L    P   EP++ ++KE++ KL   KA G
Sbjct:  831 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPG 902          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: UPI001F5E4078 (uncharacterized protein LOC124718771 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E4078)

HSP 1 Score: 51.2 bits (121), Expect = 3.030e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   61 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVG 285
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  D  E L    P   EP++ ++KE++ KL   KA G
Sbjct:  472 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISISQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPG 543          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: A0A6P8H386_ACTTE (uncharacterized protein LOC116287377 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H386_ACTTE)

HSP 1 Score: 48.5 bits (114), Expect = 5.520e-5
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   52 KSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPT--LDASILDGIEQLPEHAPLAA-EPTMNDVKEAVSKLGNGKAVGF 288
            +ST ++N +G  L  K  +   W E F+E+ N + P   + +   +G E       +A  EPT+ +VKEAV KL NGKA+G 
Sbjct:   18 QSTAVENKNGNFLSMKSEVQATWMEHFKEVPNREQPANPITSEEENGFEFSAVMEEIAVNEPTIGEVKEAVKKLKNGKALGI 99          
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA)

HSP 1 Score: 50.1 bits (118), Expect = 7.560e-5
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1
Query:    7 YQDIKSLELEGKRGCKSTYIKNASGM-LLRDKPSILLRWKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVGF 288
            Y  +KS++  G      T +K A G+ +L+D+ S+L RW E F  LLN  S   D +ILD + +LP    L   PT  +V  AV  L N K+ G 
Sbjct:   26 YNAVKSID--GPTNHCITPLKTADGLRVLKDQSSVLERWAEHFNTLLNRDSEA-DHTILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGM 117          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7801.19061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8K0NUE5_LADFU3.490e-639.08Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A3B3HUN9_ORYLA1.670e-538.37Reverse transcriptase domain-containing protein n=... [more]
UPI001F5F87EB1.730e-541.33uncharacterized protein LOC124805420 n=1 Tax=Schis... [more]
UPI001F5E8EE81.790e-541.33uncharacterized protein LOC124719790 n=1 Tax=Schis... [more]
UPI001F5F24CA1.900e-541.33uncharacterized protein LOC124777988 n=1 Tax=Schis... [more]
UPI001F5FE6C32.060e-541.33uncharacterized protein LOC124795698 n=1 Tax=Schis... [more]
UPI001F5F0EE22.300e-541.33uncharacterized protein LOC124719631 n=1 Tax=Schis... [more]
UPI001F5E40783.030e-541.33uncharacterized protein LOC124718771 n=1 Tax=Schis... [more]
A0A6P8H386_ACTTE5.520e-536.59uncharacterized protein LOC116287377 n=1 Tax=Actin... [more]
A0A8M1KV33_CLUHA7.560e-537.89zinc finger protein 883-like n=1 Tax=Clupea hareng... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7801contigF-serratus_M_contig7801:2427..2732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.2191207-CDS-F-serratus_M_contig7801:2426..27321622932326.2191207-CDS-F-serratus_M_contig7801:2426..2732Fucus serratus maleCDSF-serratus_M_contig7801 2427..2732 -
1690964254.4542036-CDS-F-serratus_M_contig7801:2426..27321690964254.4542036-CDS-F-serratus_M_contig7801:2426..2732Fucus serratus maleCDSF-serratus_M_contig7801 2427..2732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7801.19061.1prot_F-serratus_M_contig7801.19061.1Fucus serratus malepolypeptideF-serratus_M_contig7801 2427..2732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7801.19061.1

>prot_F-serratus_M_contig7801.19061.1 ID=prot_F-serratus_M_contig7801.19061.1|Name=mRNA_F-serratus_M_contig7801.19061.1|organism=Fucus serratus male|type=polypeptide|length=102bp
ELYQDIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNA
KSPTLDASILDGIEQLPEHAPLAAEPTMNDVKEAVSKLGNGKAVGFRRCL
W*
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mRNA from alignment at F-serratus_M_contig7801:2427..2732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7801.19061.1 ID=mRNA_F-serratus_M_contig7801.19061.1|Name=mRNA_F-serratus_M_contig7801.19061.1|organism=Fucus serratus male|type=mRNA|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig7801:2427..2732- (Fucus serratus male)
GAACTGTACCAGGACATCAAGTCGTTGGAGCTGGAAGGGAAGAGGGGATG TAAATCAACTTACATTAAGAACGCTTCTGGCATGTTGTTGCGGGACAAGC CGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTGAACGCG AAATCGCCAACGCTCGACGCCTCTATCCTCGACGGCATCGAGCAGTTGCC CGAACACGCCCCGCTTGCGGCCGAGCCCACGATGAACGATGTGAAGGAGG CAGTGAGCAAGCTGGGGAACGGCAAGGCTGTCGGCTTTCGTAGATGTCTG TGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7801:2427..2732-

>mRNA_F-serratus_M_contig7801.19061.1 ID=mRNA_F-serratus_M_contig7801.19061.1|Name=mRNA_F-serratus_M_contig7801.19061.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig7801:2427..2732- (Fucus serratus male)
GAACTGTACCAGGACATCAAGTCGTTGGAGCTGGAAGGGAAGAGGGGATG
TAAATCAACTTACATTAAGAACGCTTCTGGCATGTTGTTGCGGGACAAGC
CGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTGAACGCG
AAATCGCCAACGCTCGACGCCTCTATCCTCGACGGCATCGAGCAGTTGCC
CGAACACGCCCCGCTTGCGGCCGAGCCCACGATGAACGATGTGAAGGAGG
CAGTGAGCAAGCTGGGGAACGGCAAGGCTGTCGGCTTTCGTAGATGTCTG
TGGTGAGAACTGTACCAGGACATCAAGTCGTTGGAGCTGGAAGGGAAGAG
GGGATGTAAATCAACTTACATTAAGAACGCTTCTGGCATGTTGTTGCGGG
ACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTG
AACGCGAAATCGCCAACGCTCGACGCCTCTATCCTCGACGGCATCGAGCA
GTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGATGAACGATGTGA
AGGAGGCAGTGAGCAAGCTGGGGAACGGCAAGGCTGTCGGCTTTCGTAGA
TGTCTGTGGTGA
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