mRNA_F-serratus_M_contig78.19045.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig78.19045.1
Unique NamemRNA_F-serratus_M_contig78.19045.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: A0A6H5JK28_9PHAE (RL10P_insert domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK28_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 9.210e-52
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQ+PTKITKGQIEITT+VFLVP+GQKVGSSEAALL+KL I PFTYGLVI  VYD+GSVFDAAVLD+TD DM  KFA AC N+AAVSLELGFPTLASLPHSI+NAF
Sbjct:   20 LQVPTKITKGQIEITTQVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIECVYDNGSVFDAAVLDLTDEDMGNKFAAACGNVAAVSLELGFPTLASLPHSIANAF 124
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: D8LP25_ECTSI (60S acidic ribosomal protein P0 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP25_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.030e-50
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQ+PTKITKGQIEITT+VFLVP+GQKVGSSEAALL+KL I PFTYGLVI  VYD+GSVFDAAVLD+TD DM  KFA AC N+AAVSLELGFPTLASLPHSI+NAF
Sbjct:  104 LQVPTKITKGQIEITTQVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDEDMGNKFAAACGNVAAVSLELGFPTLASLPHSIANAF 208
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: A0A4D9D366_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D366_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.610e-41
Identity = 75/105 (71.43%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQI TKITKGQIEITT V ++ EG KVG+SEA LL+KL+ILPFTYGLVI ++YD+GS+FD  VLD+TDAD+  KFA A  N+AA+SL+LG+PTLASLPHSI+NAF
Sbjct:  142 LQIATKITKGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSLFDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAF 246
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: W7U6S0_9STRA (60s acidic ribosomal protein p0 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6S0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.990e-40
Identity = 75/105 (71.43%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQI TKITKGQIEITT V ++ EG KVG+SEA LL+KL+ILPFTYGLVI ++YD+GS+FD  VLD+TDAD+  KFA A  N+AA+SL+LG+PTLASLPHSI+NAF
Sbjct:  243 LQIATKITKGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSLFDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAF 347
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: A0A5D6XUU0_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUU0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.030e-39
Identity = 73/105 (69.52%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQIPTKI KGQIEI  EV L  +G KVG+SEA LL+KL+I PFTYGLVI SVYD+GS+FD AVLD+T+ D+  KF     NIAAVSLE+GFPTLAS+PHS++NAF
Sbjct:  141 LQIPTKIVKGQIEIINEVLLTKKGDKVGNSEAVLLQKLNIRPFTYGLVIQSVYDNGSLFDPAVLDLTEDDLTAKFVAGLRNIAAVSLEIGFPTLASIPHSVANAF 245
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: M4B8B5_HYAAE (60S acidic ribosomal protein P0 n=11 Tax=Peronosporaceae TaxID=4777 RepID=M4B8B5_HYAAE)

HSP 1 Score: 144 bits (362), Expect = 2.930e-39
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQI TKI KGQIEI +EV L  +G+KVG+SEAALL+KLDI PF+YGLVI  VYD+GS+FD AVLD+T+AD+  KF     N+AAVSLELG PTLAS+PHSI+NAF
Sbjct:  141 LQIATKIQKGQIEIVSEVMLTKKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAVSLELGLPTLASIPHSITNAF 245
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: D0NVM9_PHYIT (60S acidic ribosomal protein P0 n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NVM9_PHYIT)

HSP 1 Score: 144 bits (362), Expect = 2.990e-39
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQI TKI KGQIEI TEV L  +G+KVG+SEAALL+KLDI PF+YGLVI  VYD+GS+FD AVLD+T+AD+  KF     N+AA+SLELG PTLAS+PHSI+NAF
Sbjct:  141 LQIATKIQKGQIEIVTEVMLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAF 245
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: A0A835YRE1_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.250e-39
Identity = 73/105 (69.52%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQIPTKI KGQIEIT EV LV +G KVG+SEA LL +L I PFTYGLVI  VYD+GS+F+AAVLD+TD D+  +F  A  N+AA SL LG+PTLASLPHSI+NAF
Sbjct:  141 LQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAF 245
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: A0A0P6IAI3_9CRUS (60S acidic ribosomal protein P0 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6IAI3_9CRUS)

HSP 1 Score: 142 bits (357), Expect = 1.630e-38
Identity = 70/105 (66.67%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            L I TKI KGQIEI T+V +V +G+KVG+SEAALL+KL+I PF YGLVIS VYD+GS+FD AVLD+T+ D+  KFA    N+AA+SLE+GFPTLAS+PHS++NAF
Sbjct:  141 LSIGTKIAKGQIEIVTDVLMVKQGEKVGNSEAALLQKLNIRPFAYGLVISQVYDNGSLFDPAVLDLTEDDLCAKFAAGLRNVAAISLEIGFPTLASIPHSVANAF 245
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BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Match: F0WLB6_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLB6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.350e-38
Identity = 72/105 (68.57%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 LQIPTKITKGQIEITTEVFLVPEGQKVGSSEAALLKKLDILPFTYGLVISSVYDSGSVFDAAVLDITDADMVRKFANACANIAAVSLELGFPTLASLPHSISNAF 315
            LQI TKI KGQIEI +EV L+ EG+KVG+SEAALL+KL+I PF+YGLV+ SVYD+GSVFD AVLD+T+ D+  KF     N+AAVSLE+G PTLAS+PHSI+NAF
Sbjct:  141 LQIATKIQKGQIEIVSEVLLIKEGEKVGNSEAALLQKLNINPFSYGLVLVSVYDNGSVFDPAVLDLTEEDLFAKFIAGLRNVAAVSLEIGIPTLASIPHSIANAF 245
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig78.19045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK28_9PHAE9.210e-5283.81RL10P_insert domain-containing protein n=1 Tax=Ect... [more]
D8LP25_ECTSI1.030e-5083.8160S acidic ribosomal protein P0 n=1 Tax=Ectocarpus... [more]
A0A4D9D366_9STRA3.610e-4171.4360S acidic ribosomal protein P0 n=1 Tax=Nannochlor... [more]
W7U6S0_9STRA2.990e-4071.4360s acidic ribosomal protein p0 n=1 Tax=Nannochlor... [more]
A0A5D6XUU0_9STRA2.030e-3969.5260S acidic ribosomal protein P0 n=1 Tax=Pythium br... [more]
M4B8B5_HYAAE2.930e-3969.5260S acidic ribosomal protein P0 n=11 Tax=Peronospo... [more]
D0NVM9_PHYIT2.990e-3969.5260S acidic ribosomal protein P0 n=16 Tax=Peronospo... [more]
A0A835YRE1_9STRA6.250e-3969.5260S acidic ribosomal protein P0 n=1 Tax=Tribonema ... [more]
A0A0P6IAI3_9CRUS1.630e-3866.6760S acidic ribosomal protein P0 n=1 Tax=Daphnia ma... [more]
F0WLB6_9STRA2.350e-3868.5760S acidic ribosomal protein P0 n=1 Tax=Albugo lai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig78contigF-serratus_M_contig78:203920..204920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size461
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig78.19045.1prot_F-serratus_M_contig78.19045.1Fucus serratus malepolypeptideF-serratus_M_contig78 203961..204345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932323.0142634-UTR-F-serratus_M_contig78:203919..2039601622932323.0142634-UTR-F-serratus_M_contig78:203919..203960Fucus serratus maleUTRF-serratus_M_contig78 203920..203960 -
1690964253.0093224-UTR-F-serratus_M_contig78:203919..2039601690964253.0093224-UTR-F-serratus_M_contig78:203919..203960Fucus serratus maleUTRF-serratus_M_contig78 203920..203960 -
1622932323.0792193-UTR-F-serratus_M_contig78:204345..2044771622932323.0792193-UTR-F-serratus_M_contig78:204345..204477Fucus serratus maleUTRF-serratus_M_contig78 204346..204477 -
1690964253.051771-UTR-F-serratus_M_contig78:204345..2044771690964253.051771-UTR-F-serratus_M_contig78:204345..204477Fucus serratus maleUTRF-serratus_M_contig78 204346..204477 -
1622932323.1044204-UTR-F-serratus_M_contig78:204842..2049201622932323.1044204-UTR-F-serratus_M_contig78:204842..204920Fucus serratus maleUTRF-serratus_M_contig78 204843..204920 -
1690964253.0653772-UTR-F-serratus_M_contig78:204842..2049201690964253.0653772-UTR-F-serratus_M_contig78:204842..204920Fucus serratus maleUTRF-serratus_M_contig78 204843..204920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932323.0368743-CDS-F-serratus_M_contig78:203960..2039971622932323.0368743-CDS-F-serratus_M_contig78:203960..203997Fucus serratus maleCDSF-serratus_M_contig78 203961..203997 -
1690964253.0300035-CDS-F-serratus_M_contig78:203960..2039971690964253.0300035-CDS-F-serratus_M_contig78:203960..203997Fucus serratus maleCDSF-serratus_M_contig78 203961..203997 -
1622932323.056462-CDS-F-serratus_M_contig78:204172..2043451622932323.056462-CDS-F-serratus_M_contig78:204172..204345Fucus serratus maleCDSF-serratus_M_contig78 204173..204345 -
1690964253.040145-CDS-F-serratus_M_contig78:204172..2043451690964253.040145-CDS-F-serratus_M_contig78:204172..204345Fucus serratus maleCDSF-serratus_M_contig78 204173..204345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig78.19045.1

>prot_F-serratus_M_contig78.19045.1 ID=prot_F-serratus_M_contig78.19045.1|Name=mRNA_F-serratus_M_contig78.19045.1|organism=Fucus serratus male|type=polypeptide|length=70bp
MVRKFANACANIAAVSLELGFPTLASLPHSISNAFLPSWPSSSRAAKSTP
SPRRISSRRSLQTRAPSLQ*
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mRNA from alignment at F-serratus_M_contig78:203920..204920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig78.19045.1 ID=mRNA_F-serratus_M_contig78.19045.1|Name=mRNA_F-serratus_M_contig78.19045.1|organism=Fucus serratus male|type=mRNA|length=1001bp|location=Sequence derived from alignment at F-serratus_M_contig78:203920..204920- (Fucus serratus male)
CTCCAGATTCCCACGAAGATTACCAAGGGTCAAATCGAGATCACCACGGA
AGTTTTCCTCGTACCCGAGGGGCAGAAGGTCGGTTACGTTTGGCATGAAC
GGCACCTATCAAAACTATCGGTTGGTTACATGTGGGTTCGACCTGACTCT
ACAACACAGTTAAATACAGGATTGCCATATCAGGATGTATGTAGTGGGTC
GCGATTGAAGTGATTGTCCTTGACGCGTGACGCAACGGACCCGGTAACAT
AGACCATGAATAAATACTTAGTGTTCGCTTGAGGTTGCTAACCTACACCG
GGTGTTTGCCCTCACGCAGGCAAACGCGCCTGGGGTATCTCCTCCCCTAT
GCCCGCGGCAACTTTATAGCTAACGTTTTTTCGCTCTTCTTGGGTGACGC
GCTTGCACTGGGACAATAAAACGGTGCCGTACACACACCACAGGTAGGTA
GCTCTGAAGCCGCCTTGCTGAAGAAGCTCGACATTCTTCCCTTCACATAC
GGTCTGGTAATCAGCAGCGTCTACGACAGCGGATCCGTGTTCGATGCTGC
CGTGCTTGACATAACGGACGCCGACATGGTCCGCAAGTTTGCCAACGCCT
GCGCAAACATTGCTGCGGTGTCATTGGAGTTGGGTTTCCCGACCCTGGCG
TCGTTGCCTCACTCTATCTCAAACGCGTTTCTGCCCTCGTGGCCGTCGTC
ATCGAGGGCTGCGAAAAGTACTCCTTCTCCCAGGCGGATATCGTCAAGGT
TAGAACAGGGGCTTGTGATGTATCATTTTCTCACAAATTATAAAACCCCT
CAATTCATACCTTCAATGCAAACAATTTGCACGACACAAAATGGAGCTTT
AGGCCAATGAAAGTATAAAATATCGCCGTTAACATTGGCCATCCTTCCTC
GATGAAAACCCCGTTCACCGCAGGCGATCCTTGCAGACCCGAGCGCCTTC
GTTGCAGTGACCGACGGTGGCGGTTGAGATGCTACTGCCGATGCGCCGGC
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig78:203920..204920-

>mRNA_F-serratus_M_contig78.19045.1 ID=mRNA_F-serratus_M_contig78.19045.1|Name=mRNA_F-serratus_M_contig78.19045.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig78:203920..204920- (Fucus serratus male)
ATGGTCCGCAAGTTTGCCAACGCCTGCGCAAACATTGCTGCGGTGTCATT
GGAGTTGGGTTTCCCGACCCTGGCGTCGTTGCCTCACTCTATCTCAAACG
CGTTTCTGCCCTCGTGGCCGTCGTCATCGAGGGCTGCGAAAAGTACTCCT
TCTCCCAGGCGGATATCGTCAAGATGGTCCGCAAGTTTGCCAACGCCTGC
GCAAACATTGCTGCGGTGTCATTGGAGTTGGGTTTCCCGACCCTGGCGTC
GTTGCCTCACTCTATCTCAAACGCGTTTCTGCCCTCGTGGCCGTCGTCAT
CGAGGGCTGCGAAAAGTACTCCTTCTCCCAGGCGGATATCGTCAAGGCGA
TCCTTGCAGACCCGAGCGCCTTCGTTGCAGTGAGCGATCCTTGCAGACCC
GAGCGCCTTCGTTGCAGTGA
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