mRNA_F-serratus_M_contig78.19044.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig78.19044.1
Unique NamemRNA_F-serratus_M_contig78.19044.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: D8LP25_ECTSI (60S acidic ribosomal protein P0 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP25_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 1.300e-126
Identity = 187/242 (77.27%), Postives = 210/242 (86.78%), Query Frame = 1
Query:   22 MDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIA 747
            M KIR ALRG AT+LM KNTMIRK+IS + KDNPGHP EL+LP+V+GNVGFIFTNG+L +IR V+E HRVPAPARVGSIAP DV VPP  TG  P +T+FFQVLQ+PTKITKG+IEITT+VFLVP+GQKVGSSEAALLQ LS+ PFTYGLVI  VYD+GSVFDA VLD+TD DM  KFA AC N+AAVSLEL FPTLASLPHSI+NAFRALV VVIEGC+ YSF QADT+KAILA+PSAF A
Sbjct:    1 MAKIRYALRGSATVLMGKNTMIRKIISVFLKDNPGHPLELILPRVVGNVGFIFTNGELGDIRDVIEAHRVPAPARVGSIAPIDVMVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITTQVFLVPKGQKVGSSEAALLQKLSIRPFTYGLVIDCVYDNGSVFDAAVLDLTDEDMGNKFAAACGNVAAVSLELGFPTLASLPHSIANAFRALVGVVIEGCDTYSFDQADTIKAILADPSAFAA 242          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: A0A8D0Z1H1_PIG (RL10P_insert domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0Z1H1_PIG)

HSP 1 Score: 331 bits (848), Expect = 3.750e-110
Identity = 180/285 (63.16%), Postives = 206/285 (72.28%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEIT---------------------------TEVFLVPRGQKV-GSSEAALLQT--------LSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIA 747
            DNV S+ M KIR ALRG AT+LM KNTMIRK+ISTY KD+PGHP+ELLLPKV+GN+GFIFTNG+L  IR V+EEHRVPAPARVGS+APTDVKVPP  TG  P +T+FFQVLQ+PTKITKG+IEIT                              F    G  + G S  +  Q         L++ PFTYGL+I  VYD+GSVFDA VLD+TDADM  KFA AC+N+AAVSLEL FPTLASLPHSI+NAFRA+V VVIEGC  YSF QADTVKAILA+PSAF A
Sbjct:   31 DNVGSSQMAKIRFALRGTATVLMGKNTMIRKIISTYVKDHPGHPFELLLPKVVGNIGFIFTNGELGAIRDVIEEHRVPAPARVGSVAPTDVKVPPGPTGCDPGQTSFFQVLQVPTKITKGQIEITFAAACANVAAVSLELGFPTLASLPHSIANAFRAMVGVVIEGCSTYSFAQADTVKAILALNIRPFTYGLMIDCVYDNGSVFDAAVLDLTDADMANKFAAACANVAAVSLELGFPTLASLPHSIANAFRAMVGVVIEGCSTYSFAQADTVKAILADPSAFAA 315          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: A0A835YRE1_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE1_9STRA)

HSP 1 Score: 305 bits (782), Expect = 3.790e-101
Identity = 155/245 (63.27%), Postives = 192/245 (78.37%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPS 735
            DNV S  M +IRLALRG+A +L+ KNTMIRK+++ Y K NPGHPYE L+P+V GNVGFIFTNGDL ++R V+EE+RVPAPARVG++AP DV VPP  TG  P +T+FFQVLQIPTKI KG+IEIT EV LV +G KVG+SEA LL  LS+ PFTYGLVI  VYD+GS+F+A VLD+TD D+  +F  A  N+AA SL L +PTLASLPHSI+NAF+ALVAV ++ C   +F QA+  K +L  P+
Sbjct:   31 DNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQ-CPGVTFAQAEPFKKLLPAPA 274          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: D0NVM9_PHYIT (60S acidic ribosomal protein P0 n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NVM9_PHYIT)

HSP 1 Score: 305 bits (782), Expect = 9.290e-101
Identity = 156/254 (61.42%), Postives = 195/254 (76.77%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIAATGGG 762
            DNV S  M +IRL LRG+A +LM KNT++RKV + + K NPGHP EL +P + GNVGF+FTN DL+EIR V+E +RVPAPARVGSIAP DV VPP  TG+ P +T+FFQ LQI TKI KG+IEI TEV L  +G+KVG+SEAALLQ L + PF+YGLVI  VYD+GS+FD  VLD+T+AD+  KF     N+AA+SLEL  PTLAS+PHSI+NAF+ LVA+ +E CE++SF +A+  KA LA+PSAF  A   G
Sbjct:   31 DNVGSAQMQQIRLVLRGRAEVLMGKNTLMRKVFNNFVKKNPGHPLELFIPLLKGNVGFVFTNDDLSEIREVLESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVMLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVE-CEEFSFEKAEPYKAFLADPSAFAVAAPAG 283          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: A0A5D6XUU0_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUU0_9STRA)

HSP 1 Score: 303 bits (776), Expect = 7.070e-100
Identity = 156/249 (62.65%), Postives = 191/249 (76.71%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIA 747
            DNV SN + +IRLALR +A LLM KNT+IRKV + Y K NPGHP E  LP + GNVGF+FTN DLT++R V+E ++VPAPARVG++AP DV VP   TG+ P +T FFQ LQIPTKI KG+IEI  EV L  +G KVG+SEA LLQ L++ PFTYGLVI SVYD+GS+FD  VLD+T+ D+  KF     NIAAVSLE+ FPTLAS+PHS++NAF+ LVAVV+E  + +SF +AD  KA LANPSAF A
Sbjct:   31 DNVGSNQIQQIRLALRNRAELLMGKNTLIRKVFNNYVKKNPGHPLEQFLPLLKGNVGFVFTNEDLTQVREVLEANKVPAPARVGALAPIDVIVPAGPTGADPGQTGFFQALQIPTKIVKGQIEIINEVLLTKKGDKVGNSEAVLLQKLNIRPFTYGLVIQSVYDNGSLFDPAVLDLTEDDLTAKFVAGLRNIAAVSLEIGFPTLASIPHSVANAFKTLVAVVVE-LDSFSFAKADPYKAYLANPSAFAA 278          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: A0A6V2YPM3_HETAK (60S acidic ribosomal protein P0 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2YPM3_HETAK)

HSP 1 Score: 303 bits (776), Expect = 7.310e-100
Identity = 156/249 (62.65%), Postives = 197/249 (79.12%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIA 747
            DNV S+ M +IRLALRG+A +LM KNTM+RKVI+ + K NPGHP+E +  K+ GNVG +FTNGDL E+R+ +EE+RVPAPARVGSIAP +V VPP  TG  P +T+FFQVLQI TKI++G+IEI   V L+  G KVG+SEAALLQ L + PFTYGLVI S+YD+GS+FDA VLD+TDAD+  KF  A S +A+V LE+ +PTLAS+PHSI+NAF+ LVAV +E CE +SF +A+  KA LA+PSAF A
Sbjct:   29 DNVGSHQMQQIRLALRGEAEVLMGKNTMMRKVIAEFMKKNPGHPFEQISAKLRGNVGLVFTNGDLGEVRTKIEENRVPAPARVGSIAPVEVIVPPGPTGCDPGQTSFFQVLQIATKISRGQIEIVAPVSLLSAGDKVGNSEAALLQKLDIKPFTYGLVIDSIYDNGSLFDAKVLDLTDADLQAKFMAAVSKLASVCLEIGYPTLASMPHSIANAFKKLVAVAVE-CETFSFEKAEPYKAYLADPSAFAA 276          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: K3WAY4_GLOUD (60S acidic ribosomal protein P0 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAY4_GLOUD)

HSP 1 Score: 302 bits (774), Expect = 1.420e-99
Identity = 151/252 (59.92%), Postives = 194/252 (76.98%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIAATG 756
            DNV SN + +IR++LRG+A +LM KNT+IRKV S Y K NPGHP E ++P + GNVGF+FTN DL +IR V+E ++VPAPARVG++AP DV +PP  TG  P +T FFQ LQ+ TKI KG+IEI  EV L  +G+KVG+SEA LLQ L++ PFTYGLVI +VYD+GS+FD  VLD+T+ D+  KF     N+AAVSLE+ FPTLAS+PHS++NAF+ LVAVV+E  + +SF +AD  KA LA+PSAF AA G
Sbjct:   31 DNVGSNQIQQIRISLRGRAEILMGKNTLIRKVFSNYIKKNPGHPLEQVIPLLKGNVGFVFTNQDLNQIREVLESNKVPAPARVGAVAPIDVIIPPGPTGCDPGQTAFFQALQVGTKIQKGQIEIINEVLLTKKGEKVGNSEAVLLQKLNIRPFTYGLVIQTVYDNGSIFDPAVLDLTEDDLTAKFVAGLRNVAAVSLEIGFPTLASIPHSVANAFKTLVAVVVE-LDSFSFAKADPYKAYLADPSAFAAAAG 281          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: M4B8B5_HYAAE (60S acidic ribosomal protein P0 n=11 Tax=Peronosporaceae TaxID=4777 RepID=M4B8B5_HYAAE)

HSP 1 Score: 302 bits (774), Expect = 1.470e-99
Identity = 154/254 (60.63%), Postives = 194/254 (76.38%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIAATGGG 762
            DNV S  M +IRL LRG+  +LM KNT++RKV +++ K NPGHP E  +P + GNVGF+FTN DLTEIR V+E +RVPAPARVG+IAP DV VPP  TG+ P +T+FFQ LQI TKI KG+IEI +EV L  +G+KVG+SEAALLQ L + PF+YGLVI  VYD+GS+FD  VLD+T+AD+  KF     N+AAVSLEL  PTLAS+PHSI+NAF+ LVA+ +E CE++SF +A+  KA LA+PSAF  A   G
Sbjct:   31 DNVGSAQMQQIRLVLRGRGEVLMGKNTLMRKVFNSFVKKNPGHPLENFIPLLKGNVGFVFTNDDLTEIREVLESNRVPAPARVGAIAPVDVVVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVSEVMLTKKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAVSLELGLPTLASIPHSITNAFKDLVAIAVE-CEEFSFEKAEPYKAFLADPSAFAVAAPAG 283          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: F0WLB6_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLB6_9STRA)

HSP 1 Score: 301 bits (771), Expect = 4.330e-99
Identity = 151/253 (59.68%), Postives = 196/253 (77.47%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIAATGG 759
            DNV S  M +IR +LRG+A +LM KNT++RKV   + + NP HP E+++P + GN+GF+FTN DL +IRSV+E +RVPAPARVG++AP DV VPP STG  P +T+FFQ LQI TKI KG+IEI +EV L+  G+KVG+SEAALLQ L++ PF+YGLV+ SVYD+GSVFD  VLD+T+ D+  KF     N+AAVSLE+  PTLAS+PHSI+NAF++LVAV +E CE YSF +A+  KA LA+PSAF  A+ G
Sbjct:   31 DNVRSKQMQQIRQSLRGRAEILMGKNTLMRKVFGNFLRKNPNHPLEMVVPLIRGNIGFVFTNDDLNDIRSVLESNRVPAPARVGAVAPADVVVPPGSTGCDPGQTSFFQALQIATKIQKGQIEIVSEVLLIKEGEKVGNSEAALLQKLNINPFSYGLVLVSVYDNGSVFDPAVLDLTEEDLFAKFIAGLRNVAAVSLEIGIPTLASIPHSIANAFKSLVAVAVE-CETYSFEKAEPFKAYLADPSAFAVASSG 282          
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Match: A0A0P6IAI3_9CRUS (60S acidic ribosomal protein P0 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6IAI3_9CRUS)

HSP 1 Score: 301 bits (770), Expect = 5.930e-99
Identity = 152/252 (60.32%), Postives = 193/252 (76.59%), Query Frame = 1
Query:    1 DNVSSNHMDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVGFIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTFFQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGLVISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASLPHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIAATG 756
            DNV S+ M +IRL LRG+A LLM KNT++RKV S + K NPGHP E  +P + GNVGF+FTN DL +IR VVE ++VPAPARVG+IAP DV +P   TG  P +T+FFQ L I TKI KG+IEI T+V +V +G+KVG+SEAALLQ L++ PF YGLVIS VYD+GS+FD  VLD+T+ D+  KFA    N+AA+SLE+ FPTLAS+PHS++NAF+ LVA+ +E CE +SF +AD  KA LA+PSAF  A G
Sbjct:   31 DNVGSHQMQQIRLELRGRAELLMGKNTLMRKVFSNFIKKNPGHPLENFIPLLKGNVGFVFTNADLNQIREVVEGNKVPAPARVGAIAPVDVIIPAGPTGCDPGQTSFFQTLSIGTKIAKGQIEIVTDVLMVKQGEKVGNSEAALLQKLNIRPFAYGLVISQVYDNGSLFDPAVLDLTEDDLCAKFAAGLRNVAAISLEIGFPTLASIPHSVANAFKTLVAIAVE-CETFSFKKADPFKAYLADPSAFAVAAG 281          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig78.19044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP25_ECTSI1.300e-12677.2760S acidic ribosomal protein P0 n=1 Tax=Ectocarpus... [more]
A0A8D0Z1H1_PIG3.750e-11063.16RL10P_insert domain-containing protein n=1 Tax=Sus... [more]
A0A835YRE1_9STRA3.790e-10163.2760S acidic ribosomal protein P0 n=1 Tax=Tribonema ... [more]
D0NVM9_PHYIT9.290e-10161.4260S acidic ribosomal protein P0 n=16 Tax=Peronospo... [more]
A0A5D6XUU0_9STRA7.070e-10062.6560S acidic ribosomal protein P0 n=1 Tax=Pythium br... [more]
A0A6V2YPM3_HETAK7.310e-10062.6560S acidic ribosomal protein P0 n=2 Tax=Heterosigm... [more]
K3WAY4_GLOUD1.420e-9959.9260S acidic ribosomal protein P0 n=1 Tax=Globispora... [more]
M4B8B5_HYAAE1.470e-9960.6360S acidic ribosomal protein P0 n=11 Tax=Peronospo... [more]
F0WLB6_9STRA4.330e-9959.6860S acidic ribosomal protein P0 n=1 Tax=Albugo lai... [more]
A0A0P6IAI3_9CRUS5.930e-9960.3260S acidic ribosomal protein P0 n=1 Tax=Daphnia ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig78contigF-serratus_M_contig78:149237..151039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.9
Seed ortholog evalue4e-99
Seed eggNOG ortholog2880.D8LP25
Preferred nameRPP0
KEGG koko:K02941
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009409,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0015934,GO:0016020,GO:0022625,GO:0022626,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034059,GO:0036293,GO:0042221,GO:0042788,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0055044,GO:0070013,GO:0070482,GO:0071944,GO:1990904
EggNOG free text desc.ribosome biogenesis
EggNOG OGsCOG0244@1,KOG0815@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size798
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig78.19044.1prot_F-serratus_M_contig78.19044.1Fucus serratus malepolypeptideF-serratus_M_contig78 149237..151018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932322.8747911-CDS-F-serratus_M_contig78:149236..1493201622932322.8747911-CDS-F-serratus_M_contig78:149236..149320Fucus serratus maleCDSF-serratus_M_contig78 149237..149320 -
1690964252.9439552-CDS-F-serratus_M_contig78:149236..1493201690964252.9439552-CDS-F-serratus_M_contig78:149236..149320Fucus serratus maleCDSF-serratus_M_contig78 149237..149320 -
1622932322.8872964-CDS-F-serratus_M_contig78:149498..1498041622932322.8872964-CDS-F-serratus_M_contig78:149498..149804Fucus serratus maleCDSF-serratus_M_contig78 149499..149804 -
1690964252.9556816-CDS-F-serratus_M_contig78:149498..1498041690964252.9556816-CDS-F-serratus_M_contig78:149498..149804Fucus serratus maleCDSF-serratus_M_contig78 149499..149804 -
1622932322.901823-CDS-F-serratus_M_contig78:150129..1502011622932322.901823-CDS-F-serratus_M_contig78:150129..150201Fucus serratus maleCDSF-serratus_M_contig78 150130..150201 -
1690964252.9658349-CDS-F-serratus_M_contig78:150129..1502011690964252.9658349-CDS-F-serratus_M_contig78:150129..150201Fucus serratus maleCDSF-serratus_M_contig78 150130..150201 -
1622932322.933032-CDS-F-serratus_M_contig78:150491..1506861622932322.933032-CDS-F-serratus_M_contig78:150491..150686Fucus serratus maleCDSF-serratus_M_contig78 150492..150686 -
1690964252.976715-CDS-F-serratus_M_contig78:150491..1506861690964252.976715-CDS-F-serratus_M_contig78:150491..150686Fucus serratus maleCDSF-serratus_M_contig78 150492..150686 -
1622932322.9526818-CDS-F-serratus_M_contig78:150898..1510181622932322.9526818-CDS-F-serratus_M_contig78:150898..151018Fucus serratus maleCDSF-serratus_M_contig78 150899..151018 -
1690964252.9877596-CDS-F-serratus_M_contig78:150898..1510181690964252.9877596-CDS-F-serratus_M_contig78:150898..151018Fucus serratus maleCDSF-serratus_M_contig78 150899..151018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932322.967313-UTR-F-serratus_M_contig78:151018..1510391622932322.967313-UTR-F-serratus_M_contig78:151018..151039Fucus serratus maleUTRF-serratus_M_contig78 151019..151039 -
1690964252.9982154-UTR-F-serratus_M_contig78:151018..1510391690964252.9982154-UTR-F-serratus_M_contig78:151018..151039Fucus serratus maleUTRF-serratus_M_contig78 151019..151039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig78.19044.1

>prot_F-serratus_M_contig78.19044.1 ID=prot_F-serratus_M_contig78.19044.1|Name=mRNA_F-serratus_M_contig78.19044.1|organism=Fucus serratus male|type=polypeptide|length=259bp
MDKIRLALRGKATLLMRKNTMIRKVISTYCKDNPGHPYELLLPKVIGNVG
FIFTNGDLTEIRSVVEEHRVPAPARVGSIAPTDVKVPPSSTGSGPVETTF
FQVLQIPTKITKGKIEITTEVFLVPRGQKVGSSEAALLQTLSMLPFTYGL
VISSVYDSGSVFDAVVLDITDADMVRKFANACSNIAAVSLELDFPTLASL
PHSISNAFRALVAVVIEGCEKYSFPQADTVKAILANPSAFIAATGGGDRD
ATADAPAE*
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mRNA from alignment at F-serratus_M_contig78:149237..151039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig78.19044.1 ID=mRNA_F-serratus_M_contig78.19044.1|Name=mRNA_F-serratus_M_contig78.19044.1|organism=Fucus serratus male|type=mRNA|length=1803bp|location=Sequence derived from alignment at F-serratus_M_contig78:149237..151039- (Fucus serratus male)
GACAATGTCAGCTCTAACCATATGGACAAGATCCGCTTGGCTCTTCGCGG CAAAGCCACCCTGCTCATGAGAAAGAACACCATGATCCGGAAGGTCATCA GCACCTACTGCAAGGACAACCCTGGTCACCCCTACGAGCTGGTGCAGCAC CACGCGTCGCTTTCCCCTGGTCTCCGAAATCAAAACCTAGACGAAATTAG CTGTATTCCGACTGGAAAATGTTTGCGGTACGCGACCAGCTCACCAAACG AAAGAATCGAGTTTCAACACGCCGTAGACCGAACTTTAAACTCCATTAGC CGTGCGTCTTACAGTGATCGTTGCACGCTTTACTACTGCTCCTCACGTTC CAGCTCCTACCCAAGGTCATCGGCAACGTGGGTTTCATTTTCACCAATGG CGATCTAACCGAAATCCGTAGCGTGGTCGAGGAGCACCGGGTGCCCGCCC CCGCCCGTGTGGGATCCATTGCTCCAACAGACGTGAAAGTACCTCCTAGC TCGACCGGCAGCGGACCCGTAGAGACGACTTTTTTCCAAGTGCTCCAGGT AATGAGGGATTCTGTACCCCATAAGCATGGCTGCATGTGGTATGGGATGC TTTTGATACGCCGAGGGTTTGAGTTACCTTTGTATAGTCACATTACATGC CATTGTGAACTGCGTCGTAGGACGGTGTTTCGGTTGTGGGTACCTTGGGC GAGGTCAGAAAAATAACATCACCTCGAGCTTTTCATCTACAGGTAACAAT TGTTTATTATTTTAAACTTATCTTTGACTGCTTTGAAATCGTTGTCCGTA AGCAAGAAAAACACCCTTTGCTCCGTGCGCGTCTCCAGATTCCCACGAAG ATTACCAAGGGTAAAATCGAGATCACCACGGAAGTTTTCCTCGTGCCCAG GGGGCAGAAGGTCGGTAACGTTTGGCATGAATGGCACCTATCAAAACTAT CGGTCGGTTACATATGAGTTTGACCTGACTTTACAGTTGCCATATAAGGT GGTGTGGAGTGGGCCGCGATTGAAGTGATCGGACCCGGTAACATAGGCCA AGAATAAATACTTAGTGCTCGTTTAAGGTTGCTAACCTGCACCGGATGTT TGCCCTCACGCAGGCAAACGCGCCTGGGGCATATCTTCCCCTTTGCCCGC GGCAACTTTACCTCACTTTTTTTCGCTGTTCTTGCGTGACGCGCTTACGC TGGGACAATAAAACGGTGCCGTACACACACCACAGGTGGGTAGCTCTGAA GCCGCCTTGCTACAGACGCTGAGCATGCTTCCCTTCACCTACGGTTTGGT AATCAGCAGCGTCTACGACAGTGGATCCGTGTTCGATGCTGTCGTGCTTG ACATAACAGACGCCGACATGGTCCGCAAGTTTGCCAACGCCTGCTCAAAC ATTGCTGCGGTGTCGTTGGAGCTGGATTTCCCGACCCTAGCGTCATTGCC TCACTCTATCTCAAACGCGTTTCGCGCCCTTGTGGCCGTCGTCATCGAGG GCTGCGAGAAGTACTCCTTCCCCCAGGCGGATACCGTTAAGGTTAGAACA GGAGCTTGTGGTTCATATTTTTCTTACAATTCACAAAACCCCTCCATCCA TAACTTCAACAATGCAAACAACTCGCAAGACACAGATTGGAGCTTTAGGC CAACAAACGTATAAAATACCGCCGTTAACATTGGCCATCCTTCCTCGGTG TAAACCCCGCCCACCGCAGGCGATCCTCGCAAACCCGAGCGCCTTCATTG CAGCGACCGGCGGTGGCGATAGAGATGCTACTGCCGATGCACCGGCGGAA TAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig78:149237..151039-

>mRNA_F-serratus_M_contig78.19044.1 ID=mRNA_F-serratus_M_contig78.19044.1|Name=mRNA_F-serratus_M_contig78.19044.1|organism=Fucus serratus male|type=CDS|length=1554bp|location=Sequence derived from alignment at F-serratus_M_contig78:149237..151039- (Fucus serratus male)
ATGGACAAGATCCGCTTGGCTCTTCGCGGCAAAGCCACCCTGCTCATGAG
AAAGAACACCATGATCCGGAAGGTCATCAGCACCTACTGCAAGGACAACC
CTGGTCACCCCTACGAGCTGATGGACAAGATCCGCTTGGCTCTTCGCGGC
AAAGCCACCCTGCTCATGAGAAAGAACACCATGATCCGGAAGGTCATCAG
CACCTACTGCAAGGACAACCCTGGTCACCCCTACGAGCTGCTCCTACCCA
AGGTCATCGGCAACGTGGGTTTCATTTTCACCAATGGCGATCTAACCGAA
ATCCGTAGCGTGGTCGAGGAGCACCGGGTGCCCGCCCCCGCCCGTGTGGG
ATCCATTGCTCCAACAGACGTGAAAGTACCTCCTAGCTCGACCGGCAGCG
GACCCGTAGAGACGACTTTTTTCCAAGTGCTCCAGCTCCTACCCAAGGTC
ATCGGCAACGTGGGTTTCATTTTCACCAATGGCGATCTAACCGAAATCCG
TAGCGTGGTCGAGGAGCACCGGGTGCCCGCCCCCGCCCGTGTGGGATCCA
TTGCTCCAACAGACGTGAAAGTACCTCCTAGCTCGACCGGCAGCGGACCC
GTAGAGACGACTTTTTTCCAAGTGCTCCAGATTCCCACGAAGATTACCAA
GGGTAAAATCGAGATCACCACGGAAGTTTTCCTCGTGCCCAGGGGGCAGA
AGATTCCCACGAAGATTACCAAGGGTAAAATCGAGATCACCACGGAAGTT
TTCCTCGTGCCCAGGGGGCAGAAGGTGGGTAGCTCTGAAGCCGCCTTGCT
ACAGACGCTGAGCATGCTTCCCTTCACCTACGGTTTGGTAATCAGCAGCG
TCTACGACAGTGGATCCGTGTTCGATGCTGTCGTGCTTGACATAACAGAC
GCCGACATGGTCCGCAAGTTTGCCAACGCCTGCTCAAACATTGCTGCGGT
GTCGTTGGAGCTGGATTTCCCGACCCTAGCGTCATTGCCTCACTCTATCT
CAAACGCGTTTCGCGCCCTTGTGGCCGTCGTCATCGAGGGCTGCGAGAAG
TACTCCTTCCCCCAGGCGGATACCGTTAAGGTGGGTAGCTCTGAAGCCGC
CTTGCTACAGACGCTGAGCATGCTTCCCTTCACCTACGGTTTGGTAATCA
GCAGCGTCTACGACAGTGGATCCGTGTTCGATGCTGTCGTGCTTGACATA
ACAGACGCCGACATGGTCCGCAAGTTTGCCAACGCCTGCTCAAACATTGC
TGCGGTGTCGTTGGAGCTGGATTTCCCGACCCTAGCGTCATTGCCTCACT
CTATCTCAAACGCGTTTCGCGCCCTTGTGGCCGTCGTCATCGAGGGCTGC
GAGAAGTACTCCTTCCCCCAGGCGGATACCGTTAAGGCGATCCTCGCAAA
CCCGAGCGCCTTCATTGCAGCGACCGGCGGTGGCGATAGAGATGCTACTG
CCGATGCACCGGCGGAATAGGCGATCCTCGCAAACCCGAGCGCCTTCATT
GCAGCGACCGGCGGTGGCGATAGAGATGCTACTGCCGATGCACCGGCGGA
ATAG
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