mRNA_F-serratus_M_contig776.19017.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig776.19017.1
Unique NamemRNA_F-serratus_M_contig776.19017.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig776.19017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig776contigF-serratus_M_contig776:272118..272930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size544
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig776.19017.1prot_F-serratus_M_contig776.19017.1Fucus serratus malepolypeptideF-serratus_M_contig776 272133..272498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932316.1325378-UTR-F-serratus_M_contig776:272117..2721321622932316.1325378-UTR-F-serratus_M_contig776:272117..272132Fucus serratus maleUTRF-serratus_M_contig776 272118..272132 +
1690964249.534958-UTR-F-serratus_M_contig776:272117..2721321690964249.534958-UTR-F-serratus_M_contig776:272117..272132Fucus serratus maleUTRF-serratus_M_contig776 272118..272132 +
1622932316.1859615-UTR-F-serratus_M_contig776:272498..2725021622932316.1859615-UTR-F-serratus_M_contig776:272498..272502Fucus serratus maleUTRF-serratus_M_contig776 272499..272502 +
1690964249.5539181-UTR-F-serratus_M_contig776:272498..2725021690964249.5539181-UTR-F-serratus_M_contig776:272498..272502Fucus serratus maleUTRF-serratus_M_contig776 272499..272502 +
1622932316.204276-UTR-F-serratus_M_contig776:272771..2729301622932316.204276-UTR-F-serratus_M_contig776:272771..272930Fucus serratus maleUTRF-serratus_M_contig776 272772..272930 +
1690964249.5624154-UTR-F-serratus_M_contig776:272771..2729301690964249.5624154-UTR-F-serratus_M_contig776:272771..272930Fucus serratus maleUTRF-serratus_M_contig776 272772..272930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932316.157962-CDS-F-serratus_M_contig776:272132..2724981622932316.157962-CDS-F-serratus_M_contig776:272132..272498Fucus serratus maleCDSF-serratus_M_contig776 272133..272498 +
1690964249.54516-CDS-F-serratus_M_contig776:272132..2724981690964249.54516-CDS-F-serratus_M_contig776:272132..272498Fucus serratus maleCDSF-serratus_M_contig776 272133..272498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig776.19017.1

>prot_F-serratus_M_contig776.19017.1 ID=prot_F-serratus_M_contig776.19017.1|Name=mRNA_F-serratus_M_contig776.19017.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MNTGEYCAQHDPDRMANITNTGKFSKIDEYMIRKVDPHQSEVEPVADACL
NGPNWKTVHPFANASASSDGSGDSHKRARHPDVESNVFLAVPGGSSAEGL
TIRATDMLKCSSPKSEVLLSF*
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mRNA from alignment at F-serratus_M_contig776:272118..272930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig776.19017.1 ID=mRNA_F-serratus_M_contig776.19017.1|Name=mRNA_F-serratus_M_contig776.19017.1|organism=Fucus serratus male|type=mRNA|length=813bp|location=Sequence derived from alignment at F-serratus_M_contig776:272118..272930+ (Fucus serratus male)
TTTAGAGTGGCTTGTATGAACACGGGGGAGTATTGCGCTCAACACGACCC
GGACAGGATGGCCAATATAACAAATACTGGGAAATTTTCCAAGATTGACG
AATACATGATACGAAAGGTTGATCCACACCAATCCGAGGTGGAACCTGTT
GCTGACGCATGTCTCAATGGCCCAAACTGGAAAACCGTTCATCCTTTCGC
CAATGCAAGCGCTTCTTCAGACGGTAGCGGGGATTCCCATAAGCGAGCGC
GACACCCAGACGTCGAATCAAACGTTTTCCTAGCTGTTCCCGGTGGATCA
TCCGCAGAAGGGTTAACTATACGGGCGACCGACATGCTAAAGTGCTCCTC
TCCAAAGTCAGAGGTTCTTCTCTCCTTCTAGTCAGGTATGTTATGCGGGA
TCGCAAGCCCATGCGGTTTGATATACTGAAGGGTTTGGCTGGAGCTGCCT
GTTACTCTACATTGTTTCTTTATTCAAAATATGTACGATATATTTCCATC
GCGAAGCTGTGAATTTAGGTCCCGTGTCCCTGTTCCTCGCAAATATTACT
CAAGATATTAAAGTACAGCCATTCTCCAACAAAATACGCCGCTCACGCGT
CTCCTGGTGACCTTGGGCGCGTTTTTCTGCGATTTTGCCGTTTTCCAAGC
ACAGATTCTATACCGCGGTCAGTCAACACTACGCCATGGCGTCGCGAGGT
CTGGTGAGAGTCCTTCTGTGCTTTCCTCCAAAACGATTTGGGTTGATTGG
AGTTGTATCGAAGTATTGGAGGAATATTTCTTAGTACAGCACCCGTTTAT
AGGTGGAAAGGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig776:272118..272930+

>mRNA_F-serratus_M_contig776.19017.1 ID=mRNA_F-serratus_M_contig776.19017.1|Name=mRNA_F-serratus_M_contig776.19017.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig776:272118..272930+ (Fucus serratus male)
ATGAACACGGGGGAGTATTGCGCTCAACACGACCCGGACAGGATGGCCAA
TATAACAAATACTGGGAAATTTTCCAAGATTGACGAATACATGATACGAA
AGGTTGATCCACACCAATCCGAGGTGGAACCTGTTGCTGACGCATGTCTC
AATGGCCCAAACTGGAAAACCGTTCATCCTTTCGCCAATGCAAGCGCTTC
TTCAGACGGTAGCGGGGATTCCCATAAGCGAGCGCGACACCCAGACGTCG
AATCAAACGTTTTCCTAGCTGTTCCCGGTGGATCATCCGCAGAAGGGTTA
ACTATACGGGCGACCGACATGCTAAAGTGCTCCTCTCCAAAGTCAGAGGT
TCTTCTCTCCTTCTAGATGAACACGGGGGAGTATTGCGCTCAACACGACC
CGGACAGGATGGCCAATATAACAAATACTGGGAAATTTTCCAAGATTGAC
GAATACATGATACGAAAGGTTGATCCACACCAATCCGAGGTGGAACCTGT
TGCTGACGCATGTCTCAATGGCCCAAACTGGAAAACCGTTCATCCTTTCG
CCAATGCAAGCGCTTCTTCAGACGGTAGCGGGGATTCCCATAAGCGAGCG
CGACACCCAGACGTCGAATCAAACGTTTTCCTAGCTGTTCCCGGTGGATC
ATCCGCAGAAGGGTTAACTATACGGGCGACCGACATGCTAAAGTGCTCCT
CTCCAAAGTCAGAGGTTCTTCTCTCCTTCTAG
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