mRNA_F-serratus_M_contig7759.19011.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7759.19011.1
Unique NamemRNA_F-serratus_M_contig7759.19011.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: D8LJ83_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ83_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.010e-32
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YKGSPFHRVV DGWVQGGDIVSG G+GG SIYG  FGDE+F+++LN+ G+LAMANDGPHTNGSQFLV
Sbjct:  139 YKGSPFHRVVRDGWVQGGDIVSGTGDGGWSIYGEVFGDESFAIKLNETGVLAMANDGPHTNGSQFLV 205
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A7S2V0W8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 8.400e-29
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YKGSPFHRVV  GWVQGGDI+SG+G+GG+SIYG  F DE F+VE N  GILAMAN GPHTNGSQF +
Sbjct:  184 YKGSPFHRVVKGGWVQGGDIISGSGDGGISIYGETFPDETFAVEFNTEGILAMANAGPHTNGSQFFI 250
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A7S4DSW7_9EUKA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSW7_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 2.000e-26
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YKG+PFHR+V  GW QGGDI SGAG GG S+YG  FGDE+F+++ ++RGIL MAN GPHTNGSQF +
Sbjct:  171 YKGTPFHRIVPGGWAQGGDIKSGAGTGGCSVYGKTFGDESFTIKHDRRGILGMANKGPHTNGSQFYI 237
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A3P8YMY6_ESOLU (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P8YMY6_ESOLU)

HSP 1 Score: 104 bits (259), Expect = 1.200e-25
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YKGS FHRVV +GW+QGGDI SG GNGG SIYG  FGDE+F+V  +KRGIL MAN GPH+N SQF +
Sbjct:  174 YKGSIFHRVVLNGWIQGGDIASGKGNGGESIYGPTFGDESFAVSHSKRGILGMANQGPHSNSSQFYI 240
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A8B9QG08_APTOW (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Apteryx owenii TaxID=8824 RepID=A0A8B9QG08_APTOW)

HSP 1 Score: 102 bits (253), Expect = 1.600e-25
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YK S FHRVV +GW+QGGDIV+G G+GG SIYG  F DENFS+  NKRGIL MAN G H+NGSQF +
Sbjct:   82 YKNSVFHRVVKNGWIQGGDIVAGKGDGGESIYGPNFEDENFSIRHNKRGILGMANKGRHSNGSQFYI 148
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A1S3A8T9_ERIEU (peptidyl-prolyl cis-trans isomerase-like 6 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3A8T9_ERIEU)

HSP 1 Score: 102 bits (255), Expect = 6.480e-25
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YKGS FHR+V +GW+QGGDIV+G G+ G SIYG  F DENFSV  NKRGI+ MAN GPH+NGSQF +
Sbjct:  193 YKGSIFHRLVQNGWIQGGDIVAGRGDDGESIYGRTFEDENFSVPHNKRGIIGMANKGPHSNGSQFYI 259
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A6J3AR79_VICPA (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Camelidae TaxID=9835 RepID=A0A6J3AR79_VICPA)

HSP 1 Score: 101 bits (252), Expect = 9.560e-25
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            Y GS FHRVV +GWVQGGDIV+G GNGG SIYG  F DENFS+  NKRG+L M N G H+NGSQF +
Sbjct:  189 YTGSIFHRVVRNGWVQGGDIVAGKGNGGESIYGPTFEDENFSIPHNKRGVLGMVNKGHHSNGSQFYI 255
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A8B8TEB3_CAMFR (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Camelus TaxID=9836 RepID=A0A8B8TEB3_CAMFR)

HSP 1 Score: 101 bits (252), Expect = 1.170e-24
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            Y GS FHRVV +GWVQGGDIV+G GNGG SIYG  F DENFS+  NKRG+L M N G H+NGSQF +
Sbjct:  168 YTGSIFHRVVRNGWVQGGDIVAGKGNGGESIYGPTFEDENFSIPHNKRGVLGMVNKGHHSNGSQFYI 234
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BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: A0A8B7J309_9AVES (peptidyl-prolyl cis-trans isomerase-like 6 n=2 Tax=Apteryx TaxID=8821 RepID=A0A8B7J309_9AVES)

HSP 1 Score: 102 bits (253), Expect = 1.190e-24
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YK S FHRVV +GW+QGGDIV+G G+GG SIYG  F DENFS+  NKRGIL MAN G H+NGSQF +
Sbjct:  189 YKNSVFHRVVKNGWIQGGDIVAGKGDGGESIYGPNFEDENFSIRHNKRGILGMANKGRHSNGSQFYI 255
[Close]
BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Match: W5KSE7_ASTMX (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Astyanax mexicanus TaxID=7994 RepID=W5KSE7_ASTMX)

HSP 1 Score: 101 bits (252), Expect = 1.320e-24
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 YKGSPFHRVVHDGWVQGGDIV-SGAGNGGVSIYGAEFGDENFSVELNKRGILAMANDGPHTNGSQFLV 201
            YK S FHRVV +GW+QGGDI  +G GNGG SIYGA FGDE F+V  NKRGIL MAN GPH+NGSQF +
Sbjct:  174 YKNSLFHRVVPNGWLQGGDITPAGKGNGGESIYGATFGDEGFAVSHNKRGILGMANQGPHSNGSQFYI 241
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7759.19011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ83_ECTSI2.010e-3280.60Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A7S2V0W8_9STRA8.400e-2974.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DSW7_9EUKA2.000e-2667.16Peptidyl-prolyl cis-trans isomerase n=2 Tax=Lothar... [more]
A0A3P8YMY6_ESOLU1.200e-2570.15Peptidyl-prolyl cis-trans isomerase n=2 Tax=Esox l... [more]
A0A8B9QG08_APTOW1.600e-2568.66Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aptery... [more]
A0A1S3A8T9_ERIEU6.480e-2568.66peptidyl-prolyl cis-trans isomerase-like 6 n=1 Tax... [more]
A0A6J3AR79_VICPA9.560e-2568.66Peptidyl-prolyl cis-trans isomerase n=6 Tax=Cameli... [more]
A0A8B8TEB3_CAMFR1.170e-2468.66Peptidyl-prolyl cis-trans isomerase n=5 Tax=Camelu... [more]
A0A8B7J309_9AVES1.190e-2468.66peptidyl-prolyl cis-trans isomerase-like 6 n=2 Tax... [more]
W5KSE7_ASTMX1.320e-2470.59Peptidyl-prolyl cis-trans isomerase n=4 Tax=Astyan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7759contigF-serratus_M_contig7759:12322..12522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog2880.D8LJ83
Preferred namePPIL6
KEGG koko:K01802,ko:K12739
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932316.0924692-CDS-F-serratus_M_contig7759:12321..125221622932316.0924692-CDS-F-serratus_M_contig7759:12321..12522Fucus serratus maleCDSF-serratus_M_contig7759 12322..12522 +
1690964249.5223007-CDS-F-serratus_M_contig7759:12321..125221690964249.5223007-CDS-F-serratus_M_contig7759:12321..12522Fucus serratus maleCDSF-serratus_M_contig7759 12322..12522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7759.19011.1prot_F-serratus_M_contig7759.19011.1Fucus serratus malepolypeptideF-serratus_M_contig7759 12322..12522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7759.19011.1

>prot_F-serratus_M_contig7759.19011.1 ID=prot_F-serratus_M_contig7759.19011.1|Name=mRNA_F-serratus_M_contig7759.19011.1|organism=Fucus serratus male|type=polypeptide|length=67bp
YKGSPFHRVVHDGWVQGGDIVSGAGNGGVSIYGAEFGDENFSVELNKRGI
LAMANDGPHTNGSQFLV
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mRNA from alignment at F-serratus_M_contig7759:12322..12522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7759.19011.1 ID=mRNA_F-serratus_M_contig7759.19011.1|Name=mRNA_F-serratus_M_contig7759.19011.1|organism=Fucus serratus male|type=mRNA|length=201bp|location=Sequence derived from alignment at F-serratus_M_contig7759:12322..12522+ (Fucus serratus male)
TACAAGGGCAGCCCTTTTCATCGCGTTGTACACGATGGTTGGGTGCAGGG
AGGGGACATAGTATCTGGTGCAGGCAACGGAGGTGTATCCATCTATGGCG
CAGAGTTTGGCGACGAGAACTTTTCTGTCGAGCTCAACAAAAGGGGCATT
CTAGCTATGGCCAACGACGGACCACACACGAATGGCTCTCAATTTCTGGT
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig7759:12322..12522+

>mRNA_F-serratus_M_contig7759.19011.1 ID=mRNA_F-serratus_M_contig7759.19011.1|Name=mRNA_F-serratus_M_contig7759.19011.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig7759:12322..12522+ (Fucus serratus male)
TACAAGGGCAGCCCTTTTCATCGCGTTGTACACGATGGTTGGGTGCAGGG
AGGGGACATAGTATCTGGTGCAGGCAACGGAGGTGTATCCATCTATGGCG
CAGAGTTTGGCGACGAGAACTTTTCTGTCGAGCTCAACAAAAGGGGCATT
CTAGCTATGGCCAACGACGGACCACACACGAATGGCTCTCAATTTCTGGT
ATACAAGGGCAGCCCTTTTCATCGCGTTGTACACGATGGTTGGGTGCAGG
GAGGGGACATAGTATCTGGTGCAGGCAACGGAGGTGTATCCATCTATGGC
GCAGAGTTTGGCGACGAGAACTTTTCTGTCGAGCTCAACAAAAGGGGCAT
TCTAGCTATGGCCAACGACGGACCACACACGAATGGCTCTCAATTTCTGG
TA
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