mRNA_F-serratus_M_contig775.19005.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig775.19005.1
Unique NamemRNA_F-serratus_M_contig775.19005.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig775.19005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig775contigF-serratus_M_contig775:124941..125855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932314.628997-CDS-F-serratus_M_contig775:124940..1250431622932314.628997-CDS-F-serratus_M_contig775:124940..125043Fucus serratus maleCDSF-serratus_M_contig775 124941..125043 -
1690964248.6937509-CDS-F-serratus_M_contig775:124940..1250431690964248.6937509-CDS-F-serratus_M_contig775:124940..125043Fucus serratus maleCDSF-serratus_M_contig775 124941..125043 -
1622932314.6436572-CDS-F-serratus_M_contig775:125775..1258551622932314.6436572-CDS-F-serratus_M_contig775:125775..125855Fucus serratus maleCDSF-serratus_M_contig775 125776..125855 -
1690964248.7117982-CDS-F-serratus_M_contig775:125775..1258551690964248.7117982-CDS-F-serratus_M_contig775:125775..125855Fucus serratus maleCDSF-serratus_M_contig775 125776..125855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig775.19005.1prot_F-serratus_M_contig775.19005.1Fucus serratus malepolypeptideF-serratus_M_contig775 124941..125855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig775.19005.1

>prot_F-serratus_M_contig775.19005.1 ID=prot_F-serratus_M_contig775.19005.1|Name=mRNA_F-serratus_M_contig775.19005.1|organism=Fucus serratus male|type=polypeptide|length=61bp
IRKGSTCASENSPSQPYSEETPMIYYARRTQCFTTAAVFGQRFAAAPPAL
GRTWLPIMQV*
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mRNA from alignment at F-serratus_M_contig775:124941..125855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig775.19005.1 ID=mRNA_F-serratus_M_contig775.19005.1|Name=mRNA_F-serratus_M_contig775.19005.1|organism=Fucus serratus male|type=mRNA|length=915bp|location=Sequence derived from alignment at F-serratus_M_contig775:124941..125855- (Fucus serratus male)
ATAAGAAAAGGTTCAACATGTGCTTCCGAGAATAGCCCTTCACAGCCTTA
CAGCGAGGAGACACCTATGATCTACTACGCGTGAGTTCCCTTGTGAGCCC
TGACCCGATCATCATCAAATTGGCGTTGACTTGTCCTCGTCGCTCAAAAT
GGCTTGTGAACAATTTTCCGGAGCAACCCCTAGAGCGATGCGCCTACCGC
TCCCTTTTCGCCTGCTACGCCCTTTTAGCCAACGTTCTCCCTGTCTCGCC
GGATCCCGGTTCCGCTGCTAGTATTCCCTCAGCTGTTCCCGGACCGCCCC
TTACTTTAGCTCAACGCCCACCTTCGAGACAGCGTCCGGCCCTTTTCCTC
CTTACTGCGTATAACTGCAGAGATATGTAACTGTTGTAGAGATACAAATC
GCGACTAAATACTAGTACGAGCTATGCGACAGCTGCAAACTGCTCCCCAA
GGCCTCTGTTACCCTGGTCTTTTAGACTCTCCCCTCGGATGTGGATGCCC
CCCGTTGGATTTGGCTACTACTGACATAACTACTCTTGTTACTCCCGAAT
GTTGGACGGTACCTCTCCGTTGTCGAAAGGCACCTTCCTTTCGATTTCCC
GCCTTTTTGTTTCAGTCTTTGTCCGTTCAAGTATCATACGGAGTACCTCG
TACTATTAAGACGAACTTTTCTCCTGCTATTATATACGGTACGATATGAT
AGCATTACTGTACCGACCCTATGGCAGGCTACTTTATGCAAACCGAGAGC
TGACCTATACTCCTTGTCTTGCTTGTCCCGCCGCGAGGACCCTCCGGGCG
GGCGGGCGGAAGGAGACGCACGCAATGCTTTACTACAGCGGCGGTTTTCG
GTCAGCGCTTTGCCGCAGCTCCGCCTGCGTTGGGCCGGACTTGGCTCCCG
ATAATGCAGGTATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig775:124941..125855-

>mRNA_F-serratus_M_contig775.19005.1 ID=mRNA_F-serratus_M_contig775.19005.1|Name=mRNA_F-serratus_M_contig775.19005.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig775:124941..125855- (Fucus serratus male)
ATAAGAAAAGGTTCAACATGTGCTTCCGAGAATAGCCCTTCACAGCCTTA
CAGCGAGGAGACACCTATGATCTACTACGCATAAGAAAAGGTTCAACATG
TGCTTCCGAGAATAGCCCTTCACAGCCTTACAGCGAGGAGACACCTATGA
TCTACTACGCGAGACGCACGCAATGCTTTACTACAGCGGCGGTTTTCGGT
CAGCGCTTTGCCGCAGCTCCGCCTGCGTTGGGCCGGACTTGGCTCCCGAT
AATGCAGGTATAAGAGACGCACGCAATGCTTTACTACAGCGGCGGTTTTC
GGTCAGCGCTTTGCCGCAGCTCCGCCTGCGTTGGGCCGGACTTGGCTCCC
GATAATGCAGGTATAA
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