mRNA_F-serratus_M_contig7730.18995.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7730.18995.1
Unique NamemRNA_F-serratus_M_contig7730.18995.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7730.18995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7730contigF-serratus_M_contig7730:4457..11305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size301
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932313.0942643-CDS-F-serratus_M_contig7730:4456..46101622932313.0942643-CDS-F-serratus_M_contig7730:4456..4610Fucus serratus maleCDSF-serratus_M_contig7730 4457..4610 -
1690964247.8883812-CDS-F-serratus_M_contig7730:4456..46101690964247.8883812-CDS-F-serratus_M_contig7730:4456..4610Fucus serratus maleCDSF-serratus_M_contig7730 4457..4610 -
1622932313.110854-CDS-F-serratus_M_contig7730:11159..113051622932313.110854-CDS-F-serratus_M_contig7730:11159..11305Fucus serratus maleCDSF-serratus_M_contig7730 11160..11305 -
1690964247.9015312-CDS-F-serratus_M_contig7730:11159..113051690964247.9015312-CDS-F-serratus_M_contig7730:11159..11305Fucus serratus maleCDSF-serratus_M_contig7730 11160..11305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7730.18995.1prot_F-serratus_M_contig7730.18995.1Fucus serratus malepolypeptideF-serratus_M_contig7730 4457..11305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7730.18995.1

>prot_F-serratus_M_contig7730.18995.1 ID=prot_F-serratus_M_contig7730.18995.1|Name=mRNA_F-serratus_M_contig7730.18995.1|organism=Fucus serratus male|type=polypeptide|length=100bp
PCLACPAARTLRAGGEARNALLLRRRFRSAPCRSSFCFRPDGTHGIKCRF
SYVNTEDSYVYTKVRPLMPNLPLSSLLLSAYSVFPVPLAPFLLPFSGSL*
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mRNA from alignment at F-serratus_M_contig7730:4457..11305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7730.18995.1 ID=mRNA_F-serratus_M_contig7730.18995.1|Name=mRNA_F-serratus_M_contig7730.18995.1|organism=Fucus serratus male|type=mRNA|length=6849bp|location=Sequence derived from alignment at F-serratus_M_contig7730:4457..11305- (Fucus serratus male)
CCTTGTCTTGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGC
ACGCAATGCTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCA
GCTCCTTCTGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGGTAT
AACGGCGCGCGGATCTCGCGACCCCCCTACCCCGAATCGCTCGACATTAC
GACCCCCTGCGACCTAGATTTTCGCGCCCCGGCGTTTGCGTTCCCTCCAA
CCTTGACAAGACTTTGGTTTTCCACATCTGATGTACATCTCTTACGATGT
TTAATATATAGTACAAGCCACGCTGCAAGTACAAGAGCGTCGACCCACCG
CCCCCGCGCGGATTTTGTCGCGAAAATACAACACGCGCGGTGTTCTGAAC
GTGCAATCGGCAATTCCCTCCTACCCTGACAGGACCACTGGTATACAGCT
GTTAACACATTCAATGCGTCACGCATTTTCTGATTCTATCTGCACGTCGC
CAACCCCAATAGTAACGTGACCATGGCCTCACCCCCTTGAGTCTCTTGAT
GGCCCATTAGCGCAAACACACAAAGAGAAAAAAAAAATGGTACGGAATTG
TCCTGCACAGCAAAACTAAATGCTGGTGACAACTTTTCCCCCGGGTGATG
TAGCGACTCGGGATAGAATGACTCGCTTGCCGCGGTGTGGGCAGCCTGCA
AATTTACGGCCCTAAATCTCGCCCACAATAAGGCGGCGCTCGAACTCTCA
TGCTCTCCGCCGCAGTTTAGACCCTTATGACTCGCTTGCAGCGACGTGGA
CCGAGCTTAAATTTTTTATAGCATTATACATCACCTACTACTAGATGACG
GTGATTTTGCTTACGTACCGCAGGCCCAGAGTTCTCATGCCCCCTCGGAC
TTAAACCACTCCGGTTACTTTAATCGTCTCGCTGTAGCGCAAACAGTTAG
CGACTAGGGATAAACCCTACACTCGCTTACCGCGATGTGAACCGCATCTG
AAAAAAATAAAAAAATAAATTACAGCACTAAACCTCGCCCACAAAAAACG
GTGCCAGTGCTCTCATGCCCCCTTGACTGTAACCGATCCACTTATTTCGA
TCGCCCCACTGTAGCGCAACAACAGTTAGCGACTAGGGATAAACCCTACA
ACTCGCTTGCCGCGATGTGGACCATATTTGAAAAATTACAGTACTAATCC
TCGCCCAGAGGCGGTACCCGAGCTCCCATACTCCCTTGACTGTAACGGAT
CCACTTACTTCCATCGCCCCGCTGTAGCGCAAAAATAGTTCACGACCAGG
GAAAGACTCTACCTCGCTTACCAAATGGTGTAGCAAAAAACCAGTTAGCG
ACCAGGGATAGACTCTCCGTTGCCTACCGAAAGATGGACCATCTTTCCAA
ATTTAAAGCGACCCCTTGTCCCCCCCCCGCGACGATGGCCATTGAATCAG
TTAAAATCCGGGCGGCTCAACAGTATCCAACGTTGATGCCGACCCTGTTT
CCGGGCGACTTAGCTACCAGAGAGAAGCCGTATGCTTCATTAGCTCCGAT
GTGGACTGCATTTTCGGATTTGAACCACTTCTGTTCCGCAGGCCTCGGGC
CCGATTCCTACTCCGACCGTAACCGTTCCAGCCGCCTCTGCCACTGGATC
GCAATCTAACACCGCTCGCCTTGGATGACCCTCACATACAGTGTCCAATG
TAGATCATGTACACTCACGTAGGGACCGCCCCCTTCCGCGTCGATTATGG
CCTCTGGCCCCTCGATGCTCGCGATTACGCGATAGTCTGCACTGTGACGA
ACCAAGTACGTGTCCTTGTGGGCGCCCCTCTTCACAGACAACGTCGCCAG
GCGTGCCCTCAATATAGCGGTCGCTGTTGCAATTGTGGATCATCCGAACA
TAGCCCCCGATGATGTCCTGCCCCCTTCACGCACGCTACAAACGTCGCCG
CAATCCCGACTTGCCCCACCGCCGAGGCCCTCCTCCGCATTGTCAAGGTA
ATAGTTCCGGACCTCCGCATGCCCCAAACGTCGCCGAAGTCCCGACTCAC
CCCCCTGCATCCTCGAGCGCCCATGGTTCTGGTTTAGCCTCAACGGCTCC
CACCATGCGTTATGACCCAGCACTCTCGGGTCACACCAACCCGAACGCTC
GGCACCCAGGTACGCTCCAGGTGCAACCCTATACTACCCCGTGACGGCCC
GAAGACACTCCCGAGTCCGTACCACTGTCTTCGGCACCACTTCACGGATA
CCCCCGCCCAGTTAATTCCAACACACAGGTAACATATACTGGACCAACAT
TGCGACCGTGCCATCTCCACCATGCCCCCGACCCTGTCGTCTCGGCCAGG
ACTGACCCCCTGACCGGTACGATAATTCAGAGGTGTGGGGAGACACGCAC
ACGAGGTACGGACATACGGGTGCTCTGTCCTCCTCATGCTCGCCCCTCTC
ACGGACACGCTGCCCGGGTATGGGTTCCTCTGGGTTCAGTGCTGGCTTGG
TCAGCCTGCCTGCTATCCATGAACTCCTTCTCGATGCCAGCGACGGTGAT
GCCGCCTCAGACGACCACCATCCGCGCCCACTACAGATTGGTGTGTGCCC
CCAATCTCGACAAATTTCGGACCTTGGGACGCCGACAGCGCAGTTGACAG
CCGTTGGACACACACGAGATTGTGCCGCGACTCGACCTGCCGCGGTCATT
CCGCACCATTTTCTGGACGCAGAGAATGCCTTCCTAAACAGGGAAGAAGA
CCCCGCCCACTCATTATGGGCCAGCAGCTCAGAGCCCCCAGCACCAAGAC
ATAATACAAATGCCACAGCTGACTTGAGCGCTTCTTACGGTACTCCCCCG
ACATTGGGCCAACACGAAATTTGCCCAGATCGCGATGATTCTGAACGGGC
GCGGTCTGTCACAACCCCCCCCGTTCCCTTCTCGCATGACCTCTGCTCCC
CTTTCATCCCACTTGAACACGCATATGTCACATATGACGCATCACTTATA
TACATCTGTGATGATGTCGGCCTTTTCTGGTATCCCCCTTCGGCCTTCTC
CCAATGGACGCAATCACCGTTCACCGTAGACCTCGTCGAATATAATTGCG
CGAAACAGTTCATGATGGCCTCGAAAGCACGCCTACTCGGCGATGATACG
GCACTCTCAGCCATCCTTGCTTCAAACGACCCCCGAGAGCAAAAACGCCT
CGGCCGTCGCTTACGTCACTTTGACCATGAGCTATGGCAATCTCTCTGCG
ACACCATTGTATTACAGGGGACCCTAGCAAAATTCTCCCAGAACAACGAG
ATACGCTTCGCCCTCCTCCAAACCGGCGACCGCCGCCTCGCCGAAGCAAG
CCCTCACGATAACCTGTGGGGCATCGGCCTGAGCGCCTGCGACCCGCGCG
CCTCTTCCCCTGATTCCTGGTGCGGTAGAAATCTGCTCGGTCAGGCCTTA
GAGAGCGCCCGCGAAATTCTTCGCCAAGATTTAAATATACCGCCGACGAC
CCCGCACCGGAAACCCCGGTTCTACGGGATACTACCGGCGATACCGTTTC
GAGGTAGACCCAATTACTCACCTCCGCCTCGACACGACCCCACTCCCTGC
CATTACCCATACGGCTGCGCTCTCGGCTTTCACCAACTCGGTGCCCGATG
ACCATGCCCCCGAGGTACTTTGGCTCAAGAACAGCGCGCCGACGCGCCCC
TCCTGCCTGAACAAGGCCCTGATCTGATCGGTGGCATAGTCACCATGGAC
GACGCCACCTTCACCACCCTATTAACACTCCATAGTGGAGTTTCCGTGAC
TTCTCGATTTGACTGCCGCGCCCTAGAACCTCTCCACATAAGTTGCAATC
CAACAAAAAAAATAATAAAACCTGTAGGAATTGCAATAATCATAGTAGCT
GCGGTAGAATAAGAACGAGTATCAATATCTAATCCTACAGTAAACATGTG
ATGAGCCCCCACAATAATTCCAAGAATGCCAATAGAAAGCATCGCGTATG
TAAACACGCGGAAAAAGAGTTTCAGAAAGCGGGTGTTGAATTAGGTAAGG
CTAAATCAGATTTTAAAACGGCTGGTATAGACGTAGTTGCGGCTCGAGCA
AATAAAGCTAGTGCAGAAACTATTAAGGCTAGGGTTGAGTTATTGGGTAA
TAATTCATCTTTTAGACACAGGGTCGCCTCAATCGTTTACCCACCAAGGA
GCATTTGACCAGATGGCCGCAATAGGTGCCGCTGAAGCGTCCTGCATCCG
ATTCATAACGCCTAAAACGTGGAGCGGTTTCGGATCACACAGCTGCTCAG
CACGAATAGCCAGGCCAGAATGACCGTTCAATTCAACCATGACGGCACGA
CGTCCGCGTCCCTTGCAGTTGGACACGCTTCCACTCCCGCCTCGACCAGA
CGGCCGGATTTTCGGTGAACTCACCCTTTCCCCTTGCGATGACGACTTCA
GCAGCGCTGCTGCCTATATTCGCAACGGTGAAACCCTAGACGCTGCTTAT
AATCTTGTCTACAACGGCCCAGGCGTGATTCTCATCGACTCCCCTCAGAT
TATCCCGGTGAACTTAGTTGGCCTCGACGGCTCCCCCGCCTTAACGGGCC
ATTACATGTTTGACTTATTCCCCGTCGACGCCGACTCGGCCCCTTCGGAA
CGCTTCGTTTCCCCGGGTCGACAATTGATATCCTTGTCGGGATACCAAGA
TCTAGAACCGAATGACGTCTTAGGCACCGCCTCGCCCCCGCCCAACACGC
TCGATCCTCCGGACGAGCCCCCCCCCGAACTTCTACACCGACTCGTTCGT
CGGATAGAATTCGCGCTGGATGCGGCTGGCTGGGATCCCGCTGCCCTCGA
TGCTCTCTCCATCACACTCGTCCCCTATGCGAGCGTCTTTTTGTCGTCCA
AACTGGACTACGGCGAATGCTCTACACGTCATTGCGAAATTCAATCGCGT
CCCTACAGACTGAACCCCGTTCTCTCCAAACAGGTCGATGCCATCTTGGA
CTCCTATTTCGCCGCTGGCCTCATCCAGCATTCCACGTCACCATGGTCGA
GCCCTCTCGTATGTGTCCCAAAGAAGGCGGGCGGCATCCGAATAACAGTC
AACTATCAAAAACTGAATAAGGTCACCGAGATCCCGCCCGGCCTATAACT
TCCGTCTCTCAGGACAACGCTTCGCCGACTTCCGCTCCCGCCTGCCCCTC
CCTCCTATCGCCGACGATATCTCTGGCGCCTCCGCCCTGGCGGATCCAGA
CGATCTTGGCGTTTATCTCATCCGAGCGTGCGGTCTCACCATCCCTTCCT
GTCCCGTCCCTGGCGTGGGCTTGGGTGGGCTGGTCCCCTCGCCGGATGCC
CCAGTTTTGGGTGGGCTAGCACCCCCACCGGATACTCCGGTTTTGGGTGG
GCTACCCCTGACACAGAATGACTTCCGCACCCACCGTGCCCCGTTACCTT
CTCAACCTATAACTGCCCGGCCCTCCCGCCCCAGCGCACCTCCCGCCCAT
ACGCCCTCTGCAACCTACGCCATTAACTCCCGCGACGATACCCCCCGCCC
ATACGGACGCACACGAAGCCAAACCGCGATCTCCGCTGGACATACCCCAT
CACGATCGGATTACCGCAAGGCCGCTCACAGCGGGTTCGCCGCGCCCGCC
GCTTCAGCACCTCCTCCGTCCCGCTCGTCGCCGCCTCCGCGTTCGGATCG
CCTTGGCTACACAACCACTCCGCATGATCGCGTCCTACAGACGCCGCCTT
CCGCCGACCCCCGGTCGACCTCCCCAACTCCGGCGCCCTTGCACCCTACA
CTACCGGATCCTGACATCCACGCTGCGGCGGCCCACCTCTCCAACACTCT
GTTGGACTACAGCCACCAAGACTGGGAACAAGCACAACGTGAAGACCCTC
GCCGGATGCCCCAGTTTTGGGTGGGCTACCCCTGACATCAGATGACTTCC
GGACACACCGTGCCCCGATACCGCCTCCTTCTGCGATCCTTCGCCCTCGT
CGCCCTTGCGCGACCCTTCCCCAGGCGTCATACACAATTTAATTAACCCC
CGCGACGATGCTCCACGGCCCACACGACGGACAGACCGCTATCTTGGATG
GCCCCATTGCGCCCAGACTATCGCACGGCCGCCCACAGTGGGTTCGCCGC
GTCCGCCGCTGCAGCACCTCCTCCGTTCCGCACGTCGCCGCCTCCGCGAT
CGGTCCGCCTAGGCTCCACGACCTCCCCGGGCCCTCCTGTCCGATAATGG
ACCCCAATTCTGCGCTCTATTAGCGACCACCGTATACAAACTACTCGGGA
TACATAAGCTCACAACGAGCGCCTATCACCCCAGTAGAAATAGAGGCGTA
GAACGTGTCAACCACACTATGGCTTAAATTTTAGCCATGGTCTGTAATGA
ACACCAGAACGACTGGAACGTCCATTTCCCCCATGTCGAGTACACCTATC
ACGACTCTGTTAGCGCCGCCACGGGCCTCGCCCCTAAAGACGCCCATATT
AGACGTCTGCCGCGCCTCGCTCTCACCGTCTTTGATCGATCATACGGTGG
CATACATCAGAACCTCGATCGTGACCAGTTCGCCCATTGCGACCTTACCC
GCGAGCGTCAATAACGAGCATACGAGCTTGTGCGAGAACACAACTAACCT
ATCCTTCTTTGCCCTCTCGCCCCCTTCGTTCCCTCGCCTCCGCAGGTTTT
CCTATGTCAACACCGAGGACTCTTATGTCTACACCAAGGTTCGTCCTCTC
ATGCCTAACCTTCCCCTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTTT
TCCCGTACCCCTTGCCCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7730:4457..11305-

>mRNA_F-serratus_M_contig7730.18995.1 ID=mRNA_F-serratus_M_contig7730.18995.1|Name=mRNA_F-serratus_M_contig7730.18995.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig7730:4457..11305- (Fucus serratus male)
CCTTGTCTTGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGC
ACGCAATGCTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCA
GCTCCTTCTGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGCCTT
GTCTTGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGCACGC
AATGCTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCAGCTC
CTTCTGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGGTTTTCCT
ATGTCAACACCGAGGACTCTTATGTCTACACCAAGGTTCGTCCTCTCATG
CCTAACCTTCCCCTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCC
CGTACCCCTTGCCCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGAGTTT
TCCTATGTCAACACCGAGGACTCTTATGTCTACACCAAGGTTCGTCCTCT
CATGCCTAACCTTCCCCTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTT
TTCCCGTACCCCTTGCCCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGA
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