mRNA_F-serratus_M_contig772.18983.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig772.18983.1 vs. uniprot
Match: D8LT42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT42_ECTSI) HSP 1 Score: 188 bits (478), Expect = 1.140e-45 Identity = 121/282 (42.91%), Postives = 167/282 (59.22%), Query Frame = 1
Query: 262 LNVIISGEDSLFRGSRSGTLQPFQAHHTVGEGCLPRQITYQDVVVLFRRWQDSKATSAALEDEVATLRSYLGKGHEEVKAARQSAEIAAQATSRCEELEAKLETKNINLDASTLELTNMSRKLALKSRKLDEAQQQIARIPTLKLAIERLLEDKGRVEEALGAEARKSEEERHRSRVWSHHVDELSLQAVKNEERCRELTTQNLELGAELERLKDMLEQAKTWGAEGIEREEKLRLTGIEVSLLKDELEAVRADCGRLVELIGSTKEYSHFRRLWDDSGGLT 1107
LNV+++ E SL SRSG+ P + H + LP+Q RR + +L+ EV LRSYL G +E +A+R++A + +C EL+ K++T LDAS +E +SR + +KSRK P L + RL E G E ALG E +++EEE+ RS W VD+LSLQAV++ ERCR L+ +N +L E+ER+++ LE+AK + LRL IE LL +EL AVRADCGRLV+L+ STKEY+ FRR+WDDSGGLT
Sbjct: 10 LNVVVTREGSLSPRSRSGSASPSRGSHHHIDQQLPQQ----------RR-------AESLQKEVKVLRSYLSIGGDEARASRETAFSFFKTKEKCTELQEKVKTAKHLLDASRVESARLSRLVEVKSRKXXXXXXXXXXXPVLAAEVSRLREVTGNAESALGKEGKRAEEEKRRSEAWRARVDKLSLQAVQSAERCRTLSAENHQLKEEIERVREHLEEAKRRCSAAGATSNALRLKTIETELLSEELGAVRADCGRLVQLVSSTKEYAEFRRVWDDSGGLT 274
BLAST of mRNA_F-serratus_M_contig772.18983.1 vs. uniprot
Match: A0A6H5KFY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY4_9PHAE) HSP 1 Score: 174 bits (440), Expect = 6.210e-41 Identity = 216/781 (27.66%), Postives = 302/781 (38.67%), Query Frame = 1
Query: 436 ALEDEVATLRSYLGKGHEEVKAARQSAEIAAQATSRCEELEAKLETKNINLDASTLELTNMSRKLALKSRKLDEAQQQIARIPTLKLAIERLLEDKGRVEEALGAEARKSEEERHRSRVWSHHVDELSLQA---------VKNEERCRELTTQNLELGAELERLKDMLEQAKTWGAEGIEREEKLRLTGIEVSLLKDELEAVRADCGRLVELIGSTKEYSHFRRLWDDSGGLTHIDNTVSYSRCAINDDRGYGYRSNTTSGCLSPTSTRALGAEVSRESSIFLQPADAKLLPXXXXXEQLRLTQQPPRQYIRIIDSSLCWGDGKADTNSRTAEVTKQPTVDGAQAAGTTAWGEAMRSEWSSPSEKIFRAAMTDTEGEKGVKKATDDISTVRRAVLRVPKGRGEDAVDCSRVVLSHEEKSQGGKISAQRGAHNREDGGDISPDCGGGQRAGRARDVAAGRASISSSSGETVASAGRKVPVAAWGASIKAAGERMQRPTSAAAGMAVKKKFPAVTGDEAGAGPAYVGGGIRGGTAAREAVRWGRLDLMSVLYPAPRLPDSKTRPRDAAQDDAFVVPTILDPTHPVQEASMWVPREAATLCRRFLVDFDGESVLLPESERRGREKLFGLLVRLNAAWRKSEQSHLGRVRSRYRAKLAAARRRLEMNKPLKVVTAERDAERRHRYR----------SSSFLGPTGGNRPSPPTAVWGIDGRRVRRVSGRGDTGGVSSSRRK*HPWLVMIDIFVKR*VRFASRRGCREKRVRGKC*YAKHQGARRS 2721
+L+ EV L SYL G +E +A+R++A ++A +C EL+AK++T LDAS +E +SR + +KSRKL A+++ AR+P L + RL E G E ALG E +++EEE+ RS W VD+LSLQA V++ E CR L+ +N +L E++R+++ LE+AK + LRL IEV LL +EL AVRADC RLV L+ STKEY+ FRR+WDDSGGLT N + S D G S + +T + E ++ + F +K P P R +T+ W +AMRSEWSSPSEK+ AA T + E + A RG+ E A A G + G G G + + G + L P R P R D+F + T G+ +L ++ R L+GLL+ LNA WR SE+ H+ R+R+RYRA+LAAA RRL M KPL+ V ER AERR + + + T WG DGRR+R GG S RR + +S R +K V + K +G RR+
Sbjct: 24 SLQKEVKVLSSYLRIGGDEARASRETAFSFSKAKEKCTELQAKVKTAKRLLDASRVESARLSRLVEVKSRKLHAARKKAARVPVLAAEVGRLREVTGNTESALGKEGKRAEEEQRRSEAWIARVDKLSLQARLGGRATGAVQSAEHCRTLSAENHQLKEEIKRVREHLEEAKRQCSAAGATSNALRLKTIEVELLSEELGAVRADCSRLVRLVSSTKEYAEFRRVWDDSGGLTRPYNGGAKSS-NFADKNGVSI-----SHGVIIKATASQEEETTKSAVSF-----SKAAPFSGGMPHTXXXXXXPA------------------AAERGTPITRSSDP----------WEQAMRSEWSSPSEKLIGAA-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKE------RTLAGRGSRPEE--------------------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGREAHH----GVGKGLGGSSMSGXXXXXXXXXXXXXXXHRLRVRTLTPTQRRPCGFLETRRDCAGDSFKIWTATG----------------------------GKYILRSATKHR---LLWGLLLGLNACWRLSERRHVERLRTRYRAELAAAHRRLHMRKPLEEVVGERAAERRRSSQPLTTYSNLAAAGALAAKTAAGGHGRALTQWGTDGRRIRN-------GGEESGRRSGTACATEYSRSCMSSINTSSGRPQPDKEVGTRLTRTKGRGCRRA 678 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig772.18983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig772.18983.1 >prot_F-serratus_M_contig772.18983.1 ID=prot_F-serratus_M_contig772.18983.1|Name=mRNA_F-serratus_M_contig772.18983.1|organism=Fucus serratus male|type=polypeptide|length=783bp MSHPLSLNVIISGEDSLFRGSRSGTLQPFQAHHTVGEGCLPRQITYQDVVback to top mRNA from alignment at F-serratus_M_contig772:359585..377819- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig772.18983.1 ID=mRNA_F-serratus_M_contig772.18983.1|Name=mRNA_F-serratus_M_contig772.18983.1|organism=Fucus serratus male|type=mRNA|length=18235bp|location=Sequence derived from alignment at F-serratus_M_contig772:359585..377819- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig772:359585..377819- >mRNA_F-serratus_M_contig772.18983.1 ID=mRNA_F-serratus_M_contig772.18983.1|Name=mRNA_F-serratus_M_contig772.18983.1|organism=Fucus serratus male|type=CDS|length=4698bp|location=Sequence derived from alignment at F-serratus_M_contig772:359585..377819- (Fucus serratus male)back to top |