mRNA_F-serratus_M_contig772.18979.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig772.18979.1
Unique NamemRNA_F-serratus_M_contig772.18979.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig772.18979.1 vs. uniprot
Match: D8LT40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT40_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.270e-13
Identity = 82/276 (29.71%), Postives = 119/276 (43.12%), Query Frame = 1 
Query:    7 RDDSTGYSALHFAVFYCRSSVVRVLLLAGANTRATDNYGRIPGARYQPSSYLSFSGFQQRRTIRRFLAGDLQDGMDEKGKTMFPMHAPLEAYDEDHKPQYVRAGSSRLMEAGADQSLDGYSERTSTINKSGNKRTRSLEPTIRHRSSDITRKADTGIIYLDSNEPENFSDEKETVRASEKRYKRRKRNGASAQATRRGGTGVLYYLSRAFLWNALSEKNSSGCRGDADECGADGRSGNGSRGRSNDSETAG-------SNVKYYLRRGSAKSMSFV 813
            RDD+TG+S LHFA +YCRSSVVRVL+LAGA+T+ATDN G+ PG R+Q  SYLS                        +G T           +ED +P   + GS+R                TS+                R  S+DI R+A   +  + S   +   D        E+      R G +  +   GG  V YYL R  L  A ++       GD+++  +  ++   +R RS+    +G       S V +YLRR S + + F+
Sbjct:  536 RDDATGFSPLHFAAYYCRSSVVRVLVLAGADTQATDNAGKAPGERFQAVSYLS------------------------QGST-----------EEDERPS--KHGSNRSSSXXXXXXXXXXXXXTSS----------------RRASADIARRAYATMQTMHSGVDDGSVDR-------ERGKSEVSRGGGAGDSNPAGG--VRYYLRRGSLQQAANKTREMMTAGDSNDIRSQ-KASTSNRSRSSSRPVSGGGGSGRESGVSFYLRRASLQGVPFL 748
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BLAST of mRNA_F-serratus_M_contig772.18979.1 vs. uniprot
Match: A0A836CHF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.800e-12
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:   28 SALHFAVFYCRSSVVRVLLLAGANTRATDNYGRIPGARYQPSSYLSFSGFQQRRTIRRFLAGDLQDGMDEKGKTMFPMHAPLEAYDEDHKPQYV----RAGSSRLMEAGADQSLDGYSERTSTI 387
            +ALH A ++CR ++VR+L+  GA+    D  GR PG  +  ++ +   G  +RR I +FL+G+L+      G  +FP HAPLEAYDE+HKP  +      GS+      A   +  Y  R S +
Sbjct:  331 TALHLACYHCRPAIVRLLVERGADVGIVDAEGRAPGRVFTVAALIRCGGLTERRQILQFLSGNLECDRGTHGP-VFPTHAPLEAYDEEHKPAIILPKPHKGSTDAPRLSAGGGIHYYLRRASML 453
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig772.18979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT40_ECTSI1.270e-1329.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHF3_9STRA1.800e-1236.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig772contigF-serratus_M_contig772:255877..259369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog2880.D8LT40
KEGG koko:K15436
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG0666@1,COG5273@1,KOG0509@2759,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_004050.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons6
Model size1214
Cds size1212
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig772.18979.1prot_F-serratus_M_contig772.18979.1Fucus serratus malepolypeptideF-serratus_M_contig772 255877..259367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932308.323001-CDS-F-serratus_M_contig772:255876..2559351622932308.323001-CDS-F-serratus_M_contig772:255876..255935Fucus serratus maleCDSF-serratus_M_contig772 255877..255935 +
1690964245.4708872-CDS-F-serratus_M_contig772:255876..2559351690964245.4708872-CDS-F-serratus_M_contig772:255876..255935Fucus serratus maleCDSF-serratus_M_contig772 255877..255935 +
1622932308.359209-CDS-F-serratus_M_contig772:256314..2564191622932308.359209-CDS-F-serratus_M_contig772:256314..256419Fucus serratus maleCDSF-serratus_M_contig772 256315..256419 +
1690964245.4842122-CDS-F-serratus_M_contig772:256314..2564191690964245.4842122-CDS-F-serratus_M_contig772:256314..256419Fucus serratus maleCDSF-serratus_M_contig772 256315..256419 +
1622932308.3820138-CDS-F-serratus_M_contig772:257039..2571401622932308.3820138-CDS-F-serratus_M_contig772:257039..257140Fucus serratus maleCDSF-serratus_M_contig772 257040..257140 +
1690964245.5060904-CDS-F-serratus_M_contig772:257039..2571401690964245.5060904-CDS-F-serratus_M_contig772:257039..257140Fucus serratus maleCDSF-serratus_M_contig772 257040..257140 +
1622932308.4175587-CDS-F-serratus_M_contig772:257480..2575621622932308.4175587-CDS-F-serratus_M_contig772:257480..257562Fucus serratus maleCDSF-serratus_M_contig772 257481..257562 +
1690964245.526195-CDS-F-serratus_M_contig772:257480..2575621690964245.526195-CDS-F-serratus_M_contig772:257480..257562Fucus serratus maleCDSF-serratus_M_contig772 257481..257562 +
1622932308.4345512-CDS-F-serratus_M_contig772:257898..2587181622932308.4345512-CDS-F-serratus_M_contig772:257898..258718Fucus serratus maleCDSF-serratus_M_contig772 257899..258718 +
1690964245.5388842-CDS-F-serratus_M_contig772:257898..2587181690964245.5388842-CDS-F-serratus_M_contig772:257898..258718Fucus serratus maleCDSF-serratus_M_contig772 257899..258718 +
1622932308.4488623-CDS-F-serratus_M_contig772:259322..2593671622932308.4488623-CDS-F-serratus_M_contig772:259322..259367Fucus serratus maleCDSF-serratus_M_contig772 259323..259367 +
1690964245.5500283-CDS-F-serratus_M_contig772:259322..2593671690964245.5500283-CDS-F-serratus_M_contig772:259322..259367Fucus serratus maleCDSF-serratus_M_contig772 259323..259367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig772.18979.1

>prot_F-serratus_M_contig772.18979.1 ID=prot_F-serratus_M_contig772.18979.1|Name=mRNA_F-serratus_M_contig772.18979.1|organism=Fucus serratus male|type=polypeptide|length=404bp
ELRDDSTGYSALHFAVFYCRSSVVRVLLLAGANTRATDNYGRIPGARYQP
SSYLSFSGFQQRRTIRRFLAGDLQDGMDEKGKTMFPMHAPLEAYDEDHKP
QYVRAGSSRLMEAGADQSLDGYSERTSTINKSGNKRTRSLEPTIRHRSSD
ITRKADTGIIYLDSNEPENFSDEKETVRASEKRYKRRKRNGASAQATRRG
GTGVLYYLSRAFLWNALSEKNSSGCRGDADECGADGRSGNGSRGRSNDSE
TAGSNVKYYLRRGSAKSMSFVPNRLIANDEDDGKGGNDAGALGRNGNDDA
VAMAMAAAVSAVAADTPGESSKSRNGEEDITLDHLEAGRPRRRRSSCGSD
TGGIGGRESAIAGQRLSMKFFVGIQKRAKGLATQFTAKKGVDSSKEDSYG
LRES
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mRNA from alignment at F-serratus_M_contig772:255877..259369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig772.18979.1 ID=mRNA_F-serratus_M_contig772.18979.1|Name=mRNA_F-serratus_M_contig772.18979.1|organism=Fucus serratus male|type=mRNA|length=3493bp|location=Sequence derived from alignment at F-serratus_M_contig772:255877..259369+ (Fucus serratus male)
GAGTTGAGAGACGACTCGACAGGATATTCTGCGTTGCACTTCGCTGTCTT
CTACTGCCGGTAGGAAAAATAGTGTCTCCTAAGGTTGGCCTAACAGAGTT
GTCCGTGGTTGATTTATGTATACACACGCATGTGTCGACTGGTCCTGCAG
AATCAAGCGCTACTTTCCAGATACCGAGTTCGTCGCGTACCGCGCACGGC
ATTAACCGCGTCAAGAATTGAGTAGTCTTCGTATGTTCTCGTGACCCCTG
ATTTAGCTGTTGACCCCAGTAGATCACATTCTGACTCTATTAGTTTATGA
CTTTCCTCGACTCCAGCTTACGTCTTTCTGGCGATGGTCTGATGCGCTTT
CTTTCCCAGCGACAAAGATTGAGAATGGTAGCTCGATTTTCAAGGTCTTC
CAAATGCCGACCCACCCTCCATAATATCCCCTCTACAGGAGTTCCGTAGT
GCGTGTCCTATTACTCGCCGGTGCGAATACGCGAGCAACGGACAACTACG
GAAGAATACCGGGCGCAAGATACCAGCCCTCATCATACCTGAGGTGACCT
GTGTGTCTTTTCTGAAAATGATTACCGCAAATATGTGGTGGGGTCGGGAA
ACGTGGTCTCACTGAAGGCGCGGAGTACAACAATACGGAAAGCAAGCAAA
TATAGTGAAACCTTCCCCCGTAAGCCTTCAACCGACAGGTTGGGTGGAGG
ACTTTGTTTCCCGGGTGGGGGCATTTCACGTCAATGCTTTCGAGTCCGAT
CATCGTGGTCGTTACATACCGACTTGGGTGTCAAAGGCTACGTACTTTTT
TAGCGATTTTGCTACGAGTAGCGTGGCTTGTGGTCACAATTTATTGTAGT
CTTATCTTTTTGCCACGATTTGAATGTAGTATCCTTCACCATTCATAGAC
TTTGTAATCCTATCATGGAATTGTTGCGAAGACCTCACGCCACTGCTATG
AATCTGCCAAGCAGCTGCTTTGCCGGCATCATCTCAGATCGCATCTCCAT
GACGACGTCAGGCCTGTACGAAGAGAAGTAATCTTGGCCTCATCCGCGAA
AGTAACATGACACCACAAATGACATAATACCGCCACGTCTCTTGCGAAAA
AAAACTATACGATATACTTGTTGTCGTTCTTGTCCCTTCTTCGGACGCGT
GACTCTTAACAAGCTTCTCCGGCTTCCAGCAGCGGCGAACCATTAGGCGG
TTCTTGGCGGGGGATTTACAGGACGGGATGGACGAGAAGGGAAAAACTAT
GTTCCCCATGCACGGTAACTGATTCGCCCTTTTAGGGAGAACCACGGTCA
TACTCGCCTCTTCGGGCTTTTGAAGATACACGGGGAACTAGATCGAGGGG
GAGAGGGTCGCAGCACAGAGTACACAATTTGAGATGATCGAGGCTTCTTC
CCGTTGTAAACTATCACGGTCATATTCGGTCTTCCTTTTCCCTTGTGGTG
AAAATAGGTCGTGTCGTTGTTCAGATCGCCTGAAATCTAGCGGTTATGAA
GGCTAGATCACAAAGAACAAACTATAAATGTTTTCATTTTACTCACTCGG
TGCTCAACACACACGCGCGGGTGCTTCCATTACCGTTGCATCAACACTTA
CCAGCTCCCTTGGAGGCCTATGATGAAGATCACAAGCCACAGTATGTACG
AGCGGGGAGCAGCCGCCTCATGGAAGCAGGCGCAGAGTAAGATGGTCTCT
GCGCTGGCACCCGCAAGGTCGATGCTTGCTCGCAGTCTGCGCTGAGACTT
GAGCTAGCCTTCATCAGATACCCAGCCTGGTTTTTTCAACGCCTAGAGCT
CGACGTTCATGCTTCACAAGTTTCCACCTCTCATGTTTTAGGACTTTCTT
CTTTATTTACCACGTATTTGCGCCAACGCGTGGTATAGTCGAAAAGCGAG
AACAACTCCTCGCCTTCGCACTGTTTCAGGATTTGCGCCGTCGCACTGGC
GGTTCAAGTCTGTTCATGACAAGTTGTGCAATCGCAATGCTCTCGGACCC
GCGCCGTTCACCTTAAATGCAGTCAATCTTTGGACGGATACAGCGAGCGT
ACATCAACAATAAACAAGAGTGGCAACAAAAGGACCCGCTCCCTTGAGCC
TACGATCCGCCACCGCTCCTCCGATATCACTCGAAAAGCTGACACAGGCA
TAATATATTTGGACAGCAATGAGCCCGAGAACTTTAGCGATGAAAAGGAA
ACGGTCAGAGCGAGCGAAAAAAGGTACAAACGAAGAAAAAGAAACGGGGC
GAGCGCCCAGGCCACCCGGAGGGGTGGAACCGGCGTCTTATACTACCTGA
GTAGAGCGTTTCTTTGGAATGCCCTCAGCGAGAAGAACAGCTCCGGCTGC
CGTGGCGACGCCGACGAGTGTGGTGCCGATGGTCGGTCTGGCAACGGCAG
CAGGGGCAGGTCGAATGATAGCGAGACCGCGGGCAGTAACGTCAAGTACT
ACCTGCGAAGGGGGTCGGCTAAAAGCATGTCCTTTGTTCCGAATAGACTC
ATTGCCAATGATGAAGACGATGGCAAGGGTGGTAACGATGCGGGCGCGCT
AGGTAGGAACGGTAACGACGATGCCGTAGCCATGGCAATGGCAGCTGCAG
TTTCTGCAGTCGCTGCTGACACCCCAGGAGAGTCATCAAAAAGCAGGAAC
GGTGAAGAGGACATTACTTTGGATCATCTAGAGGCTGGTCGTCCGCGACG
GCGCCGCAGTAGCTGTGGGAGCGATACGGGCGGGATCGGGGGAAGAGAGT
CGGCAATAGCGGGACAAAGGTTGTCCATGAAGTTCTTCGTCGGTATTCAG
AAGCGCGCAAAAGGCCTGGCCACCCAGTTTACTGCGAAGAAGGTGGATTT
CTTGCGATGATCTAGGAACAGCGCACAGCATCCTTCTCGTGACGAAATGT
CTGTTTCGACATTTGTTTGGAGCGCGATTTGTTTTAGCTTGATATCGTGT
ACTTACCTTTAGCACGCCATCAAAGACATCGCGTTCGTCTCAATCGGGCT
CCTACTTATGGGTAATCCTGGTGCAACATTTTGTGTCCCCTTTGGATACA
TCCTTCACGTAGGCGTAATCTTAAGATAATGTTTCTTGTTTTGACGCGCC
GAGAACGGGCACCGTTCTCTGCTGACGATGAATAGTCATATCTACTGAAG
ATCAAGAATCATCCGAACCAACCGCGCCGTAATTCATCTCGCGGACTGTC
TCTTACTCGTTTCTGAGCCTTTTGGGCTTATGCGTCTGGCACCGACCGCT
TTAACTGGTTACGTATCGAACTTTTTCAAACAGTAACTCTACACTGAACA
AACCATCGGCTATTCATCGGATGCCGCACAATATTCTAGACTTGAACACA
GCTTCTATTCTGCTATATACGCTCCCCATCATCATTCTTGCATATCGCGT
TTATGACGCACGTCTTTCATTGTACCCACGGTATGACCTGCAATAGGGAG
TCGATTCCAGCAAGGAGGATTCTTATGGATTACGCGAATCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig772:255877..259369+

>mRNA_F-serratus_M_contig772.18979.1 ID=mRNA_F-serratus_M_contig772.18979.1|Name=mRNA_F-serratus_M_contig772.18979.1|organism=Fucus serratus male|type=CDS|length=2424bp|location=Sequence derived from alignment at F-serratus_M_contig772:255877..259369+ (Fucus serratus male)
GAGTTGAGAGACGACTCGACAGGATATTCTGCGTTGCACTTCGCTGTCTT
CTACTGCCGGAGTTGAGAGACGACTCGACAGGATATTCTGCGTTGCACTT
CGCTGTCTTCTACTGCCGGAGTTCCGTAGTGCGTGTCCTATTACTCGCCG
GTGCGAATACGCGAGCAACGGACAACTACGGAAGAATACCGGGCGCAAGA
TACCAGCCCTCATCATACCTGAGGAGTTCCGTAGTGCGTGTCCTATTACT
CGCCGGTGCGAATACGCGAGCAACGGACAACTACGGAAGAATACCGGGCG
CAAGATACCAGCCCTCATCATACCTGAGCTTCTCCGGCTTCCAGCAGCGG
CGAACCATTAGGCGGTTCTTGGCGGGGGATTTACAGGACGGGATGGACGA
GAAGGGAAAAACTATGTTCCCCATGCACGCTTCTCCGGCTTCCAGCAGCG
GCGAACCATTAGGCGGTTCTTGGCGGGGGATTTACAGGACGGGATGGACG
AGAAGGGAAAAACTATGTTCCCCATGCACGCTCCCTTGGAGGCCTATGAT
GAAGATCACAAGCCACAGTATGTACGAGCGGGGAGCAGCCGCCTCATGGA
AGCAGGCGCAGACTCCCTTGGAGGCCTATGATGAAGATCACAAGCCACAG
TATGTACGAGCGGGGAGCAGCCGCCTCATGGAAGCAGGCGCAGATCAATC
TTTGGACGGATACAGCGAGCGTACATCAACAATAAACAAGAGTGGCAACA
AAAGGACCCGCTCCCTTGAGCCTACGATCCGCCACCGCTCCTCCGATATC
ACTCGAAAAGCTGACACAGGCATAATATATTTGGACAGCAATGAGCCCGA
GAACTTTAGCGATGAAAAGGAAACGGTCAGAGCGAGCGAAAAAAGGTACA
AACGAAGAAAAAGAAACGGGGCGAGCGCCCAGGCCACCCGGAGGGGTGGA
ACCGGCGTCTTATACTACCTGAGTAGAGCGTTTCTTTGGAATGCCCTCAG
CGAGAAGAACAGCTCCGGCTGCCGTGGCGACGCCGACGAGTGTGGTGCCG
ATGGTCGGTCTGGCAACGGCAGCAGGGGCAGGTCGAATGATAGCGAGACC
GCGGGCAGTAACGTCAAGTACTACCTGCGAAGGGGGTCGGCTAAAAGCAT
GTCCTTTGTTCCGAATAGACTCATTGCCAATGATGAAGACGATGGCAAGG
GTGGTAACGATGCGGGCGCGCTAGGTAGGAACGGTAACGACGATGCCGTA
GCCATGGCAATGGCAGCTGCAGTTTCTGCAGTCGCTGCTGACACCCCAGG
AGAGTCATCAAAAAGCAGGAACGGTGAAGAGGACATTACTTTGGATCATC
TAGAGGCTGGTCGTCCGCGACGGCGCCGCAGTAGCTGTGGGAGCGATACG
GGCGGGATCGGGGGAAGAGAGTCGGCAATAGCGGGACAAAGGTTGTCCAT
GAAGTTCTTCGTCGGTATTCAGAAGCGCGCAAAAGGCCTGGCCACCCAGT
TTACTGCGAAGAAGTCAATCTTTGGACGGATACAGCGAGCGTACATCAAC
AATAAACAAGAGTGGCAACAAAAGGACCCGCTCCCTTGAGCCTACGATCC
GCCACCGCTCCTCCGATATCACTCGAAAAGCTGACACAGGCATAATATAT
TTGGACAGCAATGAGCCCGAGAACTTTAGCGATGAAAAGGAAACGGTCAG
AGCGAGCGAAAAAAGGTACAAACGAAGAAAAAGAAACGGGGCGAGCGCCC
AGGCCACCCGGAGGGGTGGAACCGGCGTCTTATACTACCTGAGTAGAGCG
TTTCTTTGGAATGCCCTCAGCGAGAAGAACAGCTCCGGCTGCCGTGGCGA
CGCCGACGAGTGTGGTGCCGATGGTCGGTCTGGCAACGGCAGCAGGGGCA
GGTCGAATGATAGCGAGACCGCGGGCAGTAACGTCAAGTACTACCTGCGA
AGGGGGTCGGCTAAAAGCATGTCCTTTGTTCCGAATAGACTCATTGCCAA
TGATGAAGACGATGGCAAGGGTGGTAACGATGCGGGCGCGCTAGGTAGGA
ACGGTAACGACGATGCCGTAGCCATGGCAATGGCAGCTGCAGTTTCTGCA
GTCGCTGCTGACACCCCAGGAGAGTCATCAAAAAGCAGGAACGGTGAAGA
GGACATTACTTTGGATCATCTAGAGGCTGGTCGTCCGCGACGGCGCCGCA
GTAGCTGTGGGAGCGATACGGGCGGGATCGGGGGAAGAGAGTCGGCAATA
GCGGGACAAAGGTTGTCCATGAAGTTCTTCGTCGGTATTCAGAAGCGCGC
AAAAGGCCTGGCCACCCAGTTTACTGCGAAGAAGGGAGTCGATTCCAGCA
AGGAGGATTCTTATGGATTACGCGAATCCGGAGTCGATTCCAGCAAGGAG
GATTCTTATGGATTACGCGAATCC
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