mRNA_F-serratus_M_contig772.18978.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig772.18978.1
Unique NamemRNA_F-serratus_M_contig772.18978.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig772.18978.1 vs. uniprot
Match: D8LT40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT40_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.260e-26
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   55 VLEYATRPGGKLDVFAAARDGQVSVLKQALERGEKADAMDENGLTSLMWAARTGRLSTAKYLISQG 252
            ++ YATRPGG LD+FAAARDGQVSVLKQAL  GE+ DA DENGLT+LMWAAR GRLSTAKYL+SQG
Sbjct:  465 LVAYATRPGGSLDIFAAARDGQVSVLKQALTDGEEVDAQDENGLTALMWAARAGRLSTAKYLVSQG 530
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BLAST of mRNA_F-serratus_M_contig772.18978.1 vs. uniprot
Match: A0A6H5KIU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.260e-26
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   55 VLEYATRPGGKLDVFAAARDGQVSVLKQALERGEKADAMDENGLTSLMWAARTGRLSTAKYLISQG 252
            ++ YATRPGG LD+FAAARDGQVSVLKQAL  GE+ DA DENGLT+LMWAAR GRLSTAKYL+SQG
Sbjct:  486 LVTYATRPGGSLDIFAAARDGQVSVLKQALTDGEEVDAQDENGLTALMWAARAGRLSTAKYLVSQG 551
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BLAST of mRNA_F-serratus_M_contig772.18978.1 vs. uniprot
Match: A0A836CHF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.650e-14
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   64 YATRPGGKLDVFAAARDGQVSVLKQALERGEKADAMDENGLTSLMWAARTGRLSTAKYLISQG 252
            Y TRP G +D+ AAARDGQV+VL+ A+  G   D  DE G+T+LMWAAR GR S+A++L+  G
Sbjct:  226 YRTRPDGGIDLHAAARDGQVAVLRVAVTEGTFVDVFDEAGMTALMWAARCGRYSSAQFLLDAG 288
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig772.18978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LT40_ECTSI1.260e-2680.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIU7_9PHAE1.260e-2680.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CHF3_9STRA4.650e-1455.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig772contigF-serratus_M_contig772:255266..255869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog2880.D8LT40
KEGG koko:K15436
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG0666@1,COG5273@1,KOG0509@2759,KOG4177@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932308.2556314-CDS-F-serratus_M_contig772:255265..2553851622932308.2556314-CDS-F-serratus_M_contig772:255265..255385Fucus serratus maleCDSF-serratus_M_contig772 255266..255385 +
1690964245.4448502-CDS-F-serratus_M_contig772:255265..2553851690964245.4448502-CDS-F-serratus_M_contig772:255265..255385Fucus serratus maleCDSF-serratus_M_contig772 255266..255385 +
1622932308.2781124-CDS-F-serratus_M_contig772:255735..2558671622932308.2781124-CDS-F-serratus_M_contig772:255735..255867Fucus serratus maleCDSF-serratus_M_contig772 255736..255867 +
1690964245.458606-CDS-F-serratus_M_contig772:255735..2558671690964245.458606-CDS-F-serratus_M_contig772:255735..255867Fucus serratus maleCDSF-serratus_M_contig772 255736..255867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig772.18978.1prot_F-serratus_M_contig772.18978.1Fucus serratus malepolypeptideF-serratus_M_contig772 255266..255867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig772.18978.1

>prot_F-serratus_M_contig772.18978.1 ID=prot_F-serratus_M_contig772.18978.1|Name=mRNA_F-serratus_M_contig772.18978.1|organism=Fucus serratus male|type=polypeptide|length=84bp
VRGVTKKARIRRMSLEIAVLEYATRPGGKLDVFAAARDGQVSVLKQALER
GEKADAMDENGLTSLMWAARTGRLSTAKYLISQG
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mRNA from alignment at F-serratus_M_contig772:255266..255869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig772.18978.1 ID=mRNA_F-serratus_M_contig772.18978.1|Name=mRNA_F-serratus_M_contig772.18978.1|organism=Fucus serratus male|type=mRNA|length=604bp|location=Sequence derived from alignment at F-serratus_M_contig772:255266..255869+ (Fucus serratus male)
GTTCGTGGTGTCACAAAGAAGGCGCGCATAAGGCGCATGAGTTTAGAGAT
TGCCGTGCTGGAGTATGCAACCAGGCCCGGTGGAAAGCTGGACGTTTTTG
CCGCAGCGCGAGACGGACAGGTGGAGTTGCAGTGTATGTGCATCTGCTTC
CGCGCACATATTTTTGCTGTCTGAAAGAGAAAGATATTTCGCCGCTTCCA
CTGAAGACGAAACGATCGTAATTACAATGAGGAATGTTATAACAATCCCA
TGGTATTTGTCACGACGATTGCCGCGGCTATCTAAAATATGATGGCTAGT
GTCATGACGATCGTCATTACAATCTGAAATATCATGACAGTTGTCATGGC
GACTAAAGAACTTGAATTGTCATGACGATTGGCAGGGTAGTTCAAGTTAC
CATCTCTCCGATGATGTCAAACACATACCGAGACGCACGGTTTGTACGCT
CACGCGGGCAAACGCCACAGGTCAGCGTCTTGAAGCAAGCCTTGGAAAGA
GGAGAAAAGGCTGATGCTATGGATGAGAACGGTCTTACCTCACTCATGTG
GGCGGCGCGCACAGGCAGGCTTTCGACGGCAAAGTATCTCATATCTCAGG
GAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig772:255266..255869+

>mRNA_F-serratus_M_contig772.18978.1 ID=mRNA_F-serratus_M_contig772.18978.1|Name=mRNA_F-serratus_M_contig772.18978.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig772:255266..255869+ (Fucus serratus male)
GTTCGTGGTGTCACAAAGAAGGCGCGCATAAGGCGCATGAGTTTAGAGAT
TGCCGTGCTGGAGTATGCAACCAGGCCCGGTGGAAAGCTGGACGTTTTTG
CCGCAGCGCGAGACGGACAGGTTCGTGGTGTCACAAAGAAGGCGCGCATA
AGGCGCATGAGTTTAGAGATTGCCGTGCTGGAGTATGCAACCAGGCCCGG
TGGAAAGCTGGACGTTTTTGCCGCAGCGCGAGACGGACAGGTCAGCGTCT
TGAAGCAAGCCTTGGAAAGAGGAGAAAAGGCTGATGCTATGGATGAGAAC
GGTCTTACCTCACTCATGTGGGCGGCGCGCACAGGCAGGCTTTCGACGGC
AAAGTATCTCATATCTCAGGGAGTCAGCGTCTTGAAGCAAGCCTTGGAAA
GAGGAGAAAAGGCTGATGCTATGGATGAGAACGGTCTTACCTCACTCATG
TGGGCGGCGCGCACAGGCAGGCTTTCGACGGCAAAGTATCTCATATCTCA
GGGA
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