mRNA_F-serratus_M_contig772.18975.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig772.18975.1
Unique Name	mRNA_F-serratus_M_contig772.18975.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig772.18975.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig772.18975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig772	contig	F-serratus_M_contig772:224645..227568 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	665
Cds size	663
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig772.18975.1	prot_F-serratus_M_contig772.18975.1	Fucus serratus male	polypeptide	F-serratus_M_contig772 224645..227568 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932305.5565479-CDS-F-serratus_M_contig772:224644..224722	1622932305.5565479-CDS-F-serratus_M_contig772:224644..224722	Fucus serratus male	CDS	F-serratus_M_contig772 224645..224722 -
1690964244.370922-CDS-F-serratus_M_contig772:224644..224722	1690964244.370922-CDS-F-serratus_M_contig772:224644..224722	Fucus serratus male	CDS	F-serratus_M_contig772 224645..224722 -
1622932305.6082573-CDS-F-serratus_M_contig772:225011..225166	1622932305.6082573-CDS-F-serratus_M_contig772:225011..225166	Fucus serratus male	CDS	F-serratus_M_contig772 225012..225166 -
1690964244.3864698-CDS-F-serratus_M_contig772:225011..225166	1690964244.3864698-CDS-F-serratus_M_contig772:225011..225166	Fucus serratus male	CDS	F-serratus_M_contig772 225012..225166 -
1622932305.6267295-CDS-F-serratus_M_contig772:225467..225552	1622932305.6267295-CDS-F-serratus_M_contig772:225467..225552	Fucus serratus male	CDS	F-serratus_M_contig772 225468..225552 -
1690964244.3997986-CDS-F-serratus_M_contig772:225467..225552	1690964244.3997986-CDS-F-serratus_M_contig772:225467..225552	Fucus serratus male	CDS	F-serratus_M_contig772 225468..225552 -
1622932305.6477005-CDS-F-serratus_M_contig772:227223..227568	1622932305.6477005-CDS-F-serratus_M_contig772:227223..227568	Fucus serratus male	CDS	F-serratus_M_contig772 227224..227568 -
1690964244.4093204-CDS-F-serratus_M_contig772:227223..227568	1690964244.4093204-CDS-F-serratus_M_contig772:227223..227568	Fucus serratus male	CDS	F-serratus_M_contig772 227224..227568 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig772:224645..227568-
coding sequence from alignment at F-serratus_M_contig772:224645..227568-

protein sequence of mRNA_F-serratus_M_contig772.18975.1

>prot_F-serratus_M_contig772.18975.1 ID=prot_F-serratus_M_contig772.18975.1|Name=mRNA_F-serratus_M_contig772.18975.1|organism=Fucus serratus male|type=polypeptide|length=221bp
RAWREHLRRNKYKERTPQKPTSAVTSGLFSFVPRGAVRERWETGTSTSLV
GDLASTKLALSEGGERTLLDKSRATKVPSDLVSLASTTASIILPEAGTCV
EGGHGTISDVSKSSKAVTGKFPSRWRLSVTGSLQGVADSFSRAGSGAMTR
ARSILRMMASTLQRLKRRRRSDAAIKIQGVLMMNLANKMLLQKKKAKKYL
AAKKIQTFVRTISHNTIMSR*

mRNA from alignment at F-serratus_M_contig772:224645..227568-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig772.18975.1 ID=mRNA_F-serratus_M_contig772.18975.1|Name=mRNA_F-serratus_M_contig772.18975.1|organism=Fucus serratus male|type=mRNA|length=2924bp|location=Sequence derived from alignment at F-serratus_M_contig772:224645..227568- (Fucus serratus male)
CGGGCCTGGCGCGAACACCTCCGACGCAATAAATACAAAGAACGAACACC
CCAGAAACCGACGAGCGCTGTGACGTCGGGACTGTTCTCATTTGTGCCCC
GAGGAGCGGTAAGAGAGCGATGGGAAACAGGAACGAGCACAAGCCTGGTT
GGCGACTTGGCAAGCACAAAACTCGCGCTTAGCGAGGGAGGAGAACGCAC
TTTACTGGATAAGTCGAGAGCGACAAAAGTACCCTCAGACCTCGTGAGCT
TGGCGTCGACAACAGCGTCCATTATTTTACCTGAGGCCGGAACATGTGTC
GAGGGTGGTCACGGGACTATTAGCGATGTCAGCAAGTCTTCTAAGGTATG
AATTTGATACGGCAGATTTTTTTGGCGTGTTATGCTTGCCACTCATCAGC
TAAAAATCTGGCTGGGCTGGTACAGCATGCTACTTTCACCGGGGCGTTGA
GATGTCTTAGCGGAAAGGTGGCGCTTTTGTAGTGGCAAAGGCGTTCACTG
GGAGGAGCCATGTAGGTTGATGGGCTACGGTAAGAAGACTGTCGATGATA
GGGAACAACAAGCGCATGAGTTAATCGGGACAAATCAAATCAAGAGGGGT
CCAACGATTGGGGAGGGCGGGGATTCGACGATTTCGTCCCCGGGGAGGTT
GTCAAAACAGCCCCTTCCGGGGATGAGACTTCATGATCCCCTACATGGTC
GGCAAGCTTGCCCTGAATTCACCACATTTGACAAGGGGGTTGGTCAAGCA
TGTCCTCGGTAGGGGGTATTTTCGTGCCATTTCCTCTCAAAACGGGGACA
AATATGTTACACCCCCGCCCCCCACAATCGTTGAACTGGTCTCAAATCAA
GTGGCTGCTCTCGAGGAAGAGATGGCAACTATAATCCAGATCCTCTCGTA
GATGGCCATTCAATCCAATAATACAGGAGAGCATTTCAACTTGGCGCAAT
GTACCACCTCGAGTATCTAATGGAGCCCCATATTCAGTACAACGAATAGC
TCTCCGTACAACTTTGTTTGGGCATGCATCAATATACCCCTCGAAAAATT
CATTTTATCGGTGGATGAAAACACTAGGTACAACAGGTCGGGGTTCTCGT
GCAACAGTGTAGCAGTTCCCCGCTAAGAGACAATAACTGTTTTCAAGGGG
CATACCGATACTAGCCGAATCTCTCAATAGGGGGGCTGTTCATTGCACTG
ATTTATACGGTCACATTAGATGCTCAAGGGAAGATATTTTGCTGAATTAA
GTTGCTCAACTGTTGGTTTGAACAAAGATCTAGGAGATCTACACCATAGT
GCCAGCCTCCCCTTCGGCAACACCGACTTATATTTTCCCCGTTATTATGT
ACCAGTATTGTATATCGCTCTGAGTCTGTTCGTCATCTTCGAGACACTTT
TTTGAGCGGTCAAAGTCTCCAAATCCTTGGCATGCGTGTCAAGGACGAAG
TCCCCCGCTAGCGTGATCATTTGGCTGGGGCATTGATGCGTCTTACTTCG
AAAGGGTGCGCTCATATAGTGGCAGGGGTGTTTACCGGGAGGAGACGCAG
GTCGCGGTTTGTGGTAAGGAGCGATAATATCAAAAGAGAATAGACACACA
TGGACACAGAGAAAGCAAGAAAAATGTTGGTGCTCTCGAGGAAAAGACGG
GGACTATGGTCTGGATCCATTAGGTAGTACTCCAACCCAACAACGCAACA
ACCCGACCCAGCACAACGCCCCCCGAGTAGGTCATTTAGCCACATACTCA
GTAGAAAGAACACGGTATACATTACAATCGATGTTTTACGCCTTCGAGGA
GGTTTTGGAGATTTTTGTACGTCATTTAAGAAGAAAGGTGACCGGCCCCG
AGATCAGCGCAGTTTAAGCCACCACGTCGCATTAAGGTTGTCGGGCGTGG
AGCTCTACTTCTTTCACCGGACAATTTCATGAAAACATGCCAAAGAGCCC
TTGGCTGTCGACCTATTGCATGCGTCGATGACCGCAAAATACTGCCGCGT
CACTGGTTGGGGACAGGCCGTAACTGGGAAATTTCCGTCGAGGTGGAGAC
TTAGTGTTACCGGTAGCCTCCAAGGCGTTGCTGACTCTTTTTCTAGAGCA
GGTCAGTCGTTCGTGCGCAAAACCATTACGCCGTCTTACAAATTGTATCG
GATGTTCACGTCCAGGGTATATTCCATTGAATTGTGGGTAAAAATCTCTT
TGGCTTTGGTTCGCGGGTTTGGGTCAATATTGTTGTGTGGCAGGAAATGC
GTGCCGAGAGGCACGAACGCAGATCAATCTGCTGCGAAGGTTCCTTGACA
GGAGAGACGTTAGCTACAGCTGTGCATGGGTCTTGTTTGATAAAAATCCT
CACTTCGAGCTAGACGAGCGATACATTTGGAAAACTTCATTCTATTTTAC
AGGCTCTGGCGCCATGACGAGAGCCAGGTCCATATTGCGCATGATGGCGT
CTACCCTGCAACGACTCAAGAGACGCCGCAGGTCTGACGCAGCGATCAAG
ATTCAAGGAGTGCTGATGATGAATCTTGCTAACAAGATGCTGTTGCAAAA
AAAAAAGGTGAAAATGCAGAAAGAAGGACCAAGGGTAGTACGAGTCACAC
GAGCTAAGCATTCCGACGTGGTGCAATCGGTCAACAAATTTACTGCGCGT
GTGATTTTGGCTCTACTTTACAAGCACCCCCCCCCTTCCGTCTATTCTCA
ACTTGGAGCACTTCTATAAATCGATGGACAGCGTGTTACCGAGGGAGTCT
GACGTGCAGCCTTCACCAACGTAGACATTCAATCACGATAGCCGGAACTT
TGCTAACTTTATCTTAGATCTTTCGGGTGTTACGTGTGCTCGACAGGCGA
AGAAGTACTTGGCAGCTAAAAAAATCCAAACTTTCGTCCGCACCATCAGC
CACAACACCATAATGTCGAGGTGA

Coding sequence (CDS) from alignment at F-serratus_M_contig772:224645..227568-

>mRNA_F-serratus_M_contig772.18975.1 ID=mRNA_F-serratus_M_contig772.18975.1|Name=mRNA_F-serratus_M_contig772.18975.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig772:224645..227568- (Fucus serratus male)
CGGGCCTGGCGCGAACACCTCCGACGCAATAAATACAAAGAACGAACACC
CCAGAAACCGACGAGCGCTGTGACGTCGGGACTGTTCTCATTTGTGCCCC
GAGGAGCGGTAAGAGAGCGATGGGAAACAGGAACGAGCACAAGCCTGGTT
GGCGACTTGGCAAGCACAAAACTCGCGCTTAGCGAGGGAGGAGAACGCAC
TTTACTGGATAAGTCGAGAGCGACAAAAGTACCCTCAGACCTCGTGAGCT
TGGCGTCGACAACAGCGTCCATTATTTTACCTGAGGCCGGAACATGTGTC
GAGGGTGGTCACGGGACTATTAGCGATGTCAGCAAGTCTTCTAAGCGGGC
CTGGCGCGAACACCTCCGACGCAATAAATACAAAGAACGAACACCCCAGA
AACCGACGAGCGCTGTGACGTCGGGACTGTTCTCATTTGTGCCCCGAGGA
GCGGTAAGAGAGCGATGGGAAACAGGAACGAGCACAAGCCTGGTTGGCGA
CTTGGCAAGCACAAAACTCGCGCTTAGCGAGGGAGGAGAACGCACTTTAC
TGGATAAGTCGAGAGCGACAAAAGTACCCTCAGACCTCGTGAGCTTGGCG
TCGACAACAGCGTCCATTATTTTACCTGAGGCCGGAACATGTGTCGAGGG
TGGTCACGGGACTATTAGCGATGTCAGCAAGTCTTCTAAGGCCGTAACTG
GGAAATTTCCGTCGAGGTGGAGACTTAGTGTTACCGGTAGCCTCCAAGGC
GTTGCTGACTCTTTTTCTAGAGCAGGCCGTAACTGGGAAATTTCCGTCGA
GGTGGAGACTTAGTGTTACCGGTAGCCTCCAAGGCGTTGCTGACTCTTTT
TCTAGAGCAGGCTCTGGCGCCATGACGAGAGCCAGGTCCATATTGCGCAT
GATGGCGTCTACCCTGCAACGACTCAAGAGACGCCGCAGGTCTGACGCAG
CGATCAAGATTCAAGGAGTGCTGATGATGAATCTTGCTAACAAGATGCTG
TTGCAAAAAAAAAAGGCTCTGGCGCCATGACGAGAGCCAGGTCCATATTG
CGCATGATGGCGTCTACCCTGCAACGACTCAAGAGACGCCGCAGGTCTGA
CGCAGCGATCAAGATTCAAGGAGTGCTGATGATGAATCTTGCTAACAAGA
TGCTGTTGCAAAAAAAAAAGGCGAAGAAGTACTTGGCAGCTAAAAAAATC
CAAACTTTCGTCCGCACCATCAGCCACAACACCATAATGTCGAGGTGAGC
GAAGAAGTACTTGGCAGCTAAAAAAATCCAAACTTTCGTCCGCACCATCA
GCCACAACACCATAATGTCGAGGTGA