mRNA_F-serratus_M_contig77.18954.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig77.18954.1
Unique Name	mRNA_F-serratus_M_contig77.18954.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KUQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.070e-23
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1

Query:   40 GLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            GLQ++VWKV GS  +V ++WD  W +L +E   RIF  KT    +ARYDK++DDQSK DG+AQR SGAGT +SGSEDE EK  K +L
Sbjct:   96 GLQNEVWKVNGSGRSVGERWDACWKTLNQESLVRIFKDKTSKNCKARYDKIIDDQSKNDGKAQRDSGAGTAESGSEDEGEKNTKIQL 182

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5K0A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.990e-21
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1

Query:   40 GLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            GLQH+VWKV GS  +V ++WD  W +L  EP  R+F  K+ S  + RYDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:   87 GLQHEVWKVNGSGRSVGERWDACWKTLNREPLVRMFKEKSSSICKHRYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 173

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5K5U8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.780e-21
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1

Query:   19 LRPRPGEGLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            LRP    GLQH+VWKV GS  +V ++WD  W +L  EP  R+F  K+ S  + RYDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:   47 LRPT---GLQHEVWKVNGSGRSVGERWDACWKTLNREPLVRMFKEKSSSICKHRYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 137

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KXD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-20
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1

Query:   40 GLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            GLQH+VWKV GS  +V ++WD  W +L  EP  R+F  K+ S  + RYDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:   97 GLQHEVWKVNGSGRSVGERWDACWKTLNREPLVRMFKEKSSSICKHRYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 183

[Close]

BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KRG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.300e-20
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1

Query:   19 LRPRPGEGLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            L P    GLQ++VWKV GS  +V ++WD  W +L  EP  R+F  KT    ++ YDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:   75 LPPLSSTGLQNEVWKVNGSGRSVGERWDTCWKTLNHEPLVRMFKDKTSKNFKSCYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 168

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KF37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF37_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.820e-20
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1

Query:   40 GLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            GLQ++VW V GS+ +V ++WD  W++L +EP  R+F  K     ++RYDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:   97 GLQNEVWIVNGSRRSVGERWDTCWETLNQEPLVRMFKDKASKNCKSRYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 183

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KNA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.250e-19
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1

Query:   49 HQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            ++VWKV GS  +V ++WD  W +L +EP  R+F  KT    ++RYDK+VDDQSK DG+A R SGAGT +SGSEDE EK  K +L
Sbjct:    4 NEVWKVNGSGRSVGERWDTCWKTLNQEPLVRMFKDKTSKNCKSRYDKIVDDQSKSDGKALRDSGAGTAESGSEDEVEKNTKVQL 87

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BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KAQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.490e-9
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1

Query:  139 RIFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            RIF  KT    + RYDK+VDDQSK DG+AQR SGAGT +SGSEDE EK  K +L
Sbjct:   13 RIFKDKTSENCKERYDKIVDDQSKSDGKAQRDSGAGTAESGSEDEGEKNTKIQL 66

[Close]

BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5JY18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY18_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 7.680e-9
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1

Query:  142 IFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            +F  KT    ++RYDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:    1 MFKDKTSKNCKSRYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 53

[Close]

BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Match: A0A6H5KCM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.610e-8
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1

Query:  142 IFSTKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL 300
            +F  K+ S  + RYDK+VDDQSK DG+A R SGAGT +SGSED+ EK  K +L
Sbjct:    1 MFKEKSSSICKHRYDKIVDDQSKSDGKALRDSGAGTAESGSEDDVEKNTKVQL 53

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig77.18954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5KUQ4_9PHAE	5.070e-23	57.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0A1_9PHAE	4.990e-21	56.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5U8_9PHAE	5.780e-21	55.32	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KXD3_9PHAE	1.080e-20	56.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRG0_9PHAE	5.300e-20	52.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF37_9PHAE	8.820e-20	52.87	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNA6_9PHAE	1.250e-19	54.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAQ5_9PHAE	1.490e-9	64.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JY18_9PHAE	7.680e-9	58.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCM9_9PHAE	7.610e-8	58.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig77	contig	F-serratus_M_contig77:601519..602264 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	302
Cds size	300
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932303.243358-CDS-F-serratus_M_contig77:601518..601558	1622932303.243358-CDS-F-serratus_M_contig77:601518..601558	Fucus serratus male	CDS	F-serratus_M_contig77 601519..601558 +
1690964243.4372663-CDS-F-serratus_M_contig77:601518..601558	1690964243.4372663-CDS-F-serratus_M_contig77:601518..601558	Fucus serratus male	CDS	F-serratus_M_contig77 601519..601558 +
1622932303.2651217-CDS-F-serratus_M_contig77:602003..602263	1622932303.2651217-CDS-F-serratus_M_contig77:602003..602263	Fucus serratus male	CDS	F-serratus_M_contig77 602004..602263 +
1690964243.449124-CDS-F-serratus_M_contig77:602003..602263	1690964243.449124-CDS-F-serratus_M_contig77:602003..602263	Fucus serratus male	CDS	F-serratus_M_contig77 602004..602263 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig77.18954.1	prot_F-serratus_M_contig77.18954.1	Fucus serratus male	polypeptide	F-serratus_M_contig77 601519..602263 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig77:601519..602264+
coding sequence from alignment at F-serratus_M_contig77:601519..602264+

protein sequence of mRNA_F-serratus_M_contig77.18954.1

>prot_F-serratus_M_contig77.18954.1 ID=prot_F-serratus_M_contig77.18954.1|Name=mRNA_F-serratus_M_contig77.18954.1|organism=Fucus serratus male|type=polypeptide|length=100bp
QEVEYPLRPRPGEGLQHQVWKVVGSKLTVRQKWDDTWDSLQEEPHRRIFS
TKTKSATRARYDKLVDDQSKRDGEAQRYSGAGTEDSGSEDEAEKQMKAEL

mRNA from alignment at F-serratus_M_contig77:601519..602264+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig77.18954.1 ID=mRNA_F-serratus_M_contig77.18954.1|Name=mRNA_F-serratus_M_contig77.18954.1|organism=Fucus serratus male|type=mRNA|length=746bp|location=Sequence derived from alignment at F-serratus_M_contig77:601519..602264+ (Fucus serratus male)
CAAGAAGTGGAATATCCACTTCGACCTCGTCCTGGCGAAGGCGGGTCAGA
TTCCGATATGCTTGTTTGGTATGCTACATGATGCTCGTGTGCTTCCGGTG
TTTGTGACAACGAGCGCTCTTGTTTTTGGCAAGATGTCGTGTGCGATACA
GCAACAGCCACTCACTCTGCCGAATATTTCCATGCACGCGCCTTCACCGC
CAAGGCCATTAGGAAGCGATAGGAACTGTCCTTTCCATGTTTCCAGCTTT
TGTCTTCCACAGCTGTAGTGCGCGAAGATCAGGTACACAAATTACATACC
AACTGACGTCAGCTGCTAACGCGGCGAGTGTTCCACACTTTGGTGCGTGC
CCAAGTCGCTGCTAACCACCTCCTTTTCGCGCGGTTTTCGTATCAAATCG
TCAAATGAAATCGAGGCCCAACCCAAGTCTCCACAACATTTGTTTCTAAG
CCAACGCAATCCTTGTCCCTTTTGTCCCTCTGCAGGTCTACAACACCAAG
TCTGGAAGGTAGTCGGCAGCAAGCTGACGGTTCGGCAAAAGTGGGACGAC
ACCTGGGACAGCCTCCAGGAGGAGCCGCATCGTAGGATCTTCAGCACGAA
GACGAAATCTGCGACCAGGGCGCGTTACGACAAACTCGTCGACGATCAGA
GCAAGAGAGATGGTGAAGCTCAGCGATACTCCGGAGCTGGAACTGAAGAC
AGTGGTTCCGAGGACGAGGCAGAGAAGCAGATGAAAGCCGAGTTGG

Coding sequence (CDS) from alignment at F-serratus_M_contig77:601519..602264+

>mRNA_F-serratus_M_contig77.18954.1 ID=mRNA_F-serratus_M_contig77.18954.1|Name=mRNA_F-serratus_M_contig77.18954.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig77:601519..602264+ (Fucus serratus male)
CAAGAAGTGGAATATCCACTTCGACCTCGTCCTGGCGAAGCAAGAAGTGG
AATATCCACTTCGACCTCGTCCTGGCGAAGGTCTACAACACCAAGTCTGG
AAGGTAGTCGGCAGCAAGCTGACGGTTCGGCAAAAGTGGGACGACACCTG
GGACAGCCTCCAGGAGGAGCCGCATCGTAGGATCTTCAGCACGAAGACGA
AATCTGCGACCAGGGCGCGTTACGACAAACTCGTCGACGATCAGAGCAAG
AGAGATGGTGAAGCTCAGCGATACTCCGGAGCTGGAACTGAAGACAGTGG
TTCCGAGGACGAGGCAGAGAAGCAGATGAAAGCCGAGTTGGTCTACAACA
CCAAGTCTGGAAGGTAGTCGGCAGCAAGCTGACGGTTCGGCAAAAGTGGG
ACGACACCTGGGACAGCCTCCAGGAGGAGCCGCATCGTAGGATCTTCAGC
ACGAAGACGAAATCTGCGACCAGGGCGCGTTACGACAAACTCGTCGACGA
TCAGAGCAAGAGAGATGGTGAAGCTCAGCGATACTCCGGAGCTGGAACTG
AAGACAGTGGTTCCGAGGACGAGGCAGAGAAGCAGATGAAAGCCGAGTTG