mRNA_F-serratus_M_contig77.18946.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig77.18946.1
Unique NamemRNA_F-serratus_M_contig77.18946.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig77.18946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig77contigF-serratus_M_contig77:101968..102886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.3157778-CDS-F-serratus_M_contig77:101969..1021841622932302.3157778-CDS-F-serratus_M_contig77:101969..102184Fucus serratus maleCDSF-serratus_M_contig77 101970..102184 -
1690964242.898872-CDS-F-serratus_M_contig77:101969..1021841690964242.898872-CDS-F-serratus_M_contig77:101969..102184Fucus serratus maleCDSF-serratus_M_contig77 101970..102184 -
1622932302.332567-CDS-F-serratus_M_contig77:102825..1028861622932302.332567-CDS-F-serratus_M_contig77:102825..102886Fucus serratus maleCDSF-serratus_M_contig77 102826..102886 -
1690964242.916963-CDS-F-serratus_M_contig77:102825..1028861690964242.916963-CDS-F-serratus_M_contig77:102825..102886Fucus serratus maleCDSF-serratus_M_contig77 102826..102886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig77.18946.1prot_F-serratus_M_contig77.18946.1Fucus serratus malepolypeptideF-serratus_M_contig77 101970..102886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig77.18946.1

>prot_F-serratus_M_contig77.18946.1 ID=prot_F-serratus_M_contig77.18946.1|Name=mRNA_F-serratus_M_contig77.18946.1|organism=Fucus serratus male|type=polypeptide|length=92bp
PWVWPESFIEFIVHLPLHLQGDHTFCSSDCAGAEKHIIVEEDCESGILPS
PNTAGRVADFFADATGLKQGESIDEELYMTDATNESVSGSVS
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mRNA from alignment at F-serratus_M_contig77:101968..102886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig77.18946.1 ID=mRNA_F-serratus_M_contig77.18946.1|Name=mRNA_F-serratus_M_contig77.18946.1|organism=Fucus serratus male|type=mRNA|length=919bp|location=Sequence derived from alignment at F-serratus_M_contig77:101968..102886- (Fucus serratus male)
CCATGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATT
GCATCTACAAGGTAAAAACGATACTTTTTTCATTATGCGTTTCGCTTTTT
CCCTTGTCGCGTGCAAAAGTAGTCAAGCGCACAAAAATAAATAGCTCACA
AATGGAATGAATGGTGTGGTTGCCTCCCTGTGCACACGTTATCACCACGG
TTCCTGGTCGTTGGGTGTTACTATAGTCAGACTTATTTGGAACCGTGAGC
GTTCTATAGTTGTGTGCGTGCCCACGTACGCCTACACTATATGAGTTGTT
CAACCAATGGGGGGGACGGGGATGTCGAAAATGTTTACTCGTTTTGGGAG
GGGACGGCGCGATAAATAGACCCGGCTACATATATGACCAACTCCTTGCG
GAAATGAATTGAATTCGGGGCAAGCTTGCCGACCATGAATACCTGGAAGG
TGGGACGTCTTGGTAACCACCCCGGGGACGGAATCGACGTACCCCCGCCC
CCCTCAACCGTTGAACGAATCATATTCAGTACTCTGGGGGGCCGGGCGCA
TGGGAACTGAGTTTTTTGGGTCGACGATTTCAGGCCGTCAAAATGCACCA
TATCACGTGCTCCGTATCATTAGGCAACTGTAAAGTGAGAGTCTGTAATA
TCTTGCAAAACGTACACCGCCTGCCCCTTTTCTTGCGCGATCTCCCTGTC
AGGAGACCACACGTTCTGCTCTTCAGATTGCGCAGGTGCTGAAAAGCATA
TCATCGTTGAAGAAGATTGCGAGAGCGGGATTCTGCCGTCCCCCAACACT
GCCGGAAGGGTCGCCGACTTTTTTGCCGACGCGACGGGGCTCAAGCAGGG
CGAGAGCATCGATGAGGAGCTTTACATGACAGATGCGACTAACGAGTCGG
TCTCTGGGAGCGTCAGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig77:101968..102886-

>mRNA_F-serratus_M_contig77.18946.1 ID=mRNA_F-serratus_M_contig77.18946.1|Name=mRNA_F-serratus_M_contig77.18946.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig77:101968..102886- (Fucus serratus male)
CCATGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATT
GCATCTACAAGCCATGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTT
CACCTCCCATTGCATCTACAAGGAGACCACACGTTCTGCTCTTCAGATTG
CGCAGGTGCTGAAAAGCATATCATCGTTGAAGAAGATTGCGAGAGCGGGA
TTCTGCCGTCCCCCAACACTGCCGGAAGGGTCGCCGACTTTTTTGCCGAC
GCGACGGGGCTCAAGCAGGGCGAGAGCATCGATGAGGAGCTTTACATGAC
AGATGCGACTAACGAGTCGGTCTCTGGGAGCGTCAGCGAGACCACACGTT
CTGCTCTTCAGATTGCGCAGGTGCTGAAAAGCATATCATCGTTGAAGAAG
ATTGCGAGAGCGGGATTCTGCCGTCCCCCAACACTGCCGGAAGGGTCGCC
GACTTTTTTGCCGACGCGACGGGGCTCAAGCAGGGCGAGAGCATCGATGA
GGAGCTTTACATGACAGATGCGACTAACGAGTCGGTCTCTGGGAGCGTCA
GC
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