mRNA_F-serratus_M_contig77.18945.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig77.18945.1
Unique NamemRNA_F-serratus_M_contig77.18945.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig77.18945.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.120e-11
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   22 CKFGEELVSRTADAVDDVIREKCQDQMLLFTTAVRKVATLEVAVTDATNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAG 288
            CK  EE+V   A  V   +  + +  M+ +  AV +VA  E AV   T V I VVS H+ Q+NTGTLRHMA RESGP  FFS CAN+AG
Sbjct:  409 CK-REEMVHAPAALV---LTTRIKALMVRYVEAVVQVAKEEAAVFVMTGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 493
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BLAST of mRNA_F-serratus_M_contig77.18945.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.120e-10
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  163 TNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAG 288
            T V I VVS H+ Q+NTGTLRHMA RESGP  FFS CAN+AG
Sbjct:    2 TGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 43
[Close]
BLAST of mRNA_F-serratus_M_contig77.18945.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.590e-9
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:   22 CKFGEELVSRTADAVDDVIREKCQDQMLLFTTAVRKVATLEVAVTDATNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAG 288
            CK  EE+V   A  V   +  + +  M+ +  AV +VA  E AV   T + I VVS  + Q NTGTLRHMA RESGP  FFS CAN+AG
Sbjct:  267 CK-REEMVHAPAALV---LTTRIKALMVRYVEAVVQVAKEETAVFVMTGLRIMVVSSLLGQGNTGTLRHMAWRESGPWTFFSPCANEAG 351
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig77.18945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE2.120e-1150.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGM5_9PHAE8.120e-1071.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JYT6_9PHAE5.590e-948.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig77contigF-serratus_M_contig77:100659..101640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size292
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig77.18945.1prot_F-serratus_M_contig77.18945.1Fucus serratus malepolypeptideF-serratus_M_contig77 100660..101640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.2224362-CDS-F-serratus_M_contig77:100659..1007381622932302.2224362-CDS-F-serratus_M_contig77:100659..100738Fucus serratus maleCDSF-serratus_M_contig77 100660..100738 -
1690964242.8651164-CDS-F-serratus_M_contig77:100659..1007381690964242.8651164-CDS-F-serratus_M_contig77:100659..100738Fucus serratus maleCDSF-serratus_M_contig77 100660..100738 -
1622932302.2533853-CDS-F-serratus_M_contig77:100952..1010711622932302.2533853-CDS-F-serratus_M_contig77:100952..101071Fucus serratus maleCDSF-serratus_M_contig77 100953..101071 -
1690964242.8757987-CDS-F-serratus_M_contig77:100952..1010711690964242.8757987-CDS-F-serratus_M_contig77:100952..101071Fucus serratus maleCDSF-serratus_M_contig77 100953..101071 -
1622932302.2679434-CDS-F-serratus_M_contig77:101547..1016401622932302.2679434-CDS-F-serratus_M_contig77:101547..101640Fucus serratus maleCDSF-serratus_M_contig77 101548..101640 -
1690964242.8870273-CDS-F-serratus_M_contig77:101547..1016401690964242.8870273-CDS-F-serratus_M_contig77:101547..101640Fucus serratus maleCDSF-serratus_M_contig77 101548..101640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig77.18945.1

>prot_F-serratus_M_contig77.18945.1 ID=prot_F-serratus_M_contig77.18945.1|Name=mRNA_F-serratus_M_contig77.18945.1|organism=Fucus serratus male|type=polypeptide|length=97bp
IADVVQVCKFGEELVSRTADAVDDVIREKCQDQMLLFTTAVRKVATLEVA
VTDATNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAGA
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mRNA from alignment at F-serratus_M_contig77:100659..101640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig77.18945.1 ID=mRNA_F-serratus_M_contig77.18945.1|Name=mRNA_F-serratus_M_contig77.18945.1|organism=Fucus serratus male|type=mRNA|length=982bp|location=Sequence derived from alignment at F-serratus_M_contig77:100659..101640- (Fucus serratus male)
ATTGCCGATGTGGTGCAAGTCTGCAAGTTCGGGGAAGAGCTCGTCTCCAG
GACCGCCGATGCTGTAGATGACGTAATTCGGGAAAAATGTCAGGTGAGGA
ACTCATCCGTCGTTGCTCACCTATTGCGAAATTTCTTCGTTTTGTACTAT
CGAGGTTAATGGTAACCTAACTAGGAAAATATTTGCAGGTGTCTCCGGGT
ACGGTATTAACTGGTGTTTTCGAAAAAGCCCTCGGAGTACATTTAAAGCG
GGCTGTTTTCAATCGTGATTATCGAAAAACACCGTGATTTAGAGGGTGTT
CTAGGCACCGTGTTTCAAGCGGGGCTTTGTGATAAGGGCGTACATAAAGT
GCACGCCCCGGCGACTCTATGGATGACAACGAAGGTCAAAGTGAGAGACG
TAGACTTCCATATGGATCTAACCTTAAGCAGCTTACTACCGCTTTTATTC
GTCGTTATTTGCGCCGAAGTTAATGGCATACCGTAAAGAATCCAGTTGCA
CTTTTACGTGCGACGTAGCACCTCTCTAACTGTCGTTTACTTCTGCCTTC
GCATTGACTACATTGCTAGGACCAGATGCTGTTATTCACGACAGCGGTGC
GAAAGGTCGCCACGCTAGAGGTGGCTGTGACGGACGCAACGAACGTCACC
ATAAAGGTGGTCTCAATCCATATCAACCAGGAGAACACGTGAGCCTGCAA
AAACTAGTGGATAGTAGCGTTTGGGTGGGTGTAAAGGAACGTTTTATGCA
CGACTGTAATGATAATAGTACATTTGTAAAACGATCCGGGTGACATCAGG
TCCCAGTGTCTATTTATAGCTCGGTCACGAACTACGTCGACGGTTTCAAA
CTAATGTACACAGTCTCGCCGCGCGCTTCTACGATCTGTCCATCTCACTC
AGGGGAACTCTACGCCACATGGCAAAACGAGAGAGCGGACCTAGCATGTT
TTTCTCCCACTGCGCGAACGACGCAGGGGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig77:100659..101640-

>mRNA_F-serratus_M_contig77.18945.1 ID=mRNA_F-serratus_M_contig77.18945.1|Name=mRNA_F-serratus_M_contig77.18945.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig77:100659..101640- (Fucus serratus male)
ATTGCCGATGTGGTGCAAGTCTGCAAGTTCGGGGAAGAGCTCGTCTCCAG
GACCGCCGATGCTGTAGATGACGTAATTCGGGAAAAATGTCAGATTGCCG
ATGTGGTGCAAGTCTGCAAGTTCGGGGAAGAGCTCGTCTCCAGGACCGCC
GATGCTGTAGATGACGTAATTCGGGAAAAATGTCAGGACCAGATGCTGTT
ATTCACGACAGCGGTGCGAAAGGTCGCCACGCTAGAGGTGGCTGTGACGG
ACGCAACGAACGTCACCATAAAGGTGGTCTCAATCCATATCAACCAGGAG
AACACGACCAGATGCTGTTATTCACGACAGCGGTGCGAAAGGTCGCCACG
CTAGAGGTGGCTGTGACGGACGCAACGAACGTCACCATAAAGGTGGTCTC
AATCCATATCAACCAGGAGAACACGGGAACTCTACGCCACATGGCAAAAC
GAGAGAGCGGACCTAGCATGTTTTTCTCCCACTGCGCGAACGACGCAGGG
GCAGGGAACTCTACGCCACATGGCAAAACGAGAGAGCGGACCTAGCATGT
TTTTCTCCCACTGCGCGAACGACGCAGGGGCA
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