mRNA_F-serratus_M_contig7697.18943.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7697.18943.1
Unique NamemRNA_F-serratus_M_contig7697.18943.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7697.18943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7697contigF-serratus_M_contig7697:2527..3937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D8LJD9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ureidoglycolate hydrolase activity
EggNOG OGs2QTP8@2759,COG3194@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.0546494-CDS-F-serratus_M_contig7697:2526..26851622932302.0546494-CDS-F-serratus_M_contig7697:2526..2685Fucus serratus maleCDSF-serratus_M_contig7697 2527..2685 -
1690964242.7985458-CDS-F-serratus_M_contig7697:2526..26851690964242.7985458-CDS-F-serratus_M_contig7697:2526..2685Fucus serratus maleCDSF-serratus_M_contig7697 2527..2685 -
1622932302.0728798-CDS-F-serratus_M_contig7697:3895..39371622932302.0728798-CDS-F-serratus_M_contig7697:3895..3937Fucus serratus maleCDSF-serratus_M_contig7697 3896..3937 -
1690964242.811159-CDS-F-serratus_M_contig7697:3895..39371690964242.811159-CDS-F-serratus_M_contig7697:3895..3937Fucus serratus maleCDSF-serratus_M_contig7697 3896..3937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7697.18943.1prot_F-serratus_M_contig7697.18943.1Fucus serratus malepolypeptideF-serratus_M_contig7697 2527..3937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7697.18943.1

>prot_F-serratus_M_contig7697.18943.1 ID=prot_F-serratus_M_contig7697.18943.1|Name=mRNA_F-serratus_M_contig7697.18943.1|organism=Fucus serratus male|type=polypeptide|length=67bp
ERSKDSRPRIFHFKLVDAKHRVLYDLGTSTAEERVSWTDTITKASRFSLG
AGHEERRDTLSRRLLVT
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mRNA from alignment at F-serratus_M_contig7697:2527..3937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7697.18943.1 ID=mRNA_F-serratus_M_contig7697.18943.1|Name=mRNA_F-serratus_M_contig7697.18943.1|organism=Fucus serratus male|type=mRNA|length=1411bp|location=Sequence derived from alignment at F-serratus_M_contig7697:2527..3937- (Fucus serratus male)
GAGCGCTCGAAAGACTCGCGACCTCGCATTTTCCACTTCAAGGTAGGCGC
GCGGTGGCTCGAGAGTCTCTCCTAGGGTTCCCCCGCCCTTGACCAACCTT
TACCGTGAAATGAAATAATTTTCGTGTTTGATTGTTGTGTATAGTTATGT
TTTGTTGTTGTTTTGTGGAGTGTGTAGTATTGAGTGTTAGGTGTTTTTTT
CTGGACCATCATCACGTTTTTTTTTTGTTCTGCCAATTTGCACCGCCGAA
AAGCACATACAAAAGTACAATATACACGCATGAACATATATATATATATA
TATATATCATTCCCCCTGGGAAAGACCAATGTCAGTGTTAATGAATGACG
GGGCCGAATTGCGCGGTTATGTGCAATTAAAAAAACACGCACACACACAC
ACACACACACTAACCTAAGAAAAGGGGACGCGGGCGGGGACGGAGCGGGA
ACGGGAACAGGGGTAGAGAGAGACCCGTGGGCGAACACAAGATAGGAGCG
GGGACGGAAACGAGAGCAGTAGCGGAGATGGGGATGGGGACGGGTGCGGG
GAGGGCGGAGGAGAGGAAAAGAAGCGAAAGAAACTGCACAAGAGTTGTAG
ACGCGATGTGGGAAACGGGGGAGACTTGGGCGGAAATAAAAAACACGTAC
AGTACCAATAGACAAGAAGTGTTGGTTCAGTAGCTGCCGACCCCGATAAT
CTAGAGAATGGTAAGTAAGCGGGGAGGAAAGCACGAGGCACTCAGAGCTT
AAGTAAGAACTGTATTGTACAATTAGAGAGAGTGTCTCCTTTGTCTTGGG
AGGATCGATGCTGCTAGTAGTGGCAGTAGTGGCAGTAGTGGCATAGAATG
ACTATTAATAGGATGACAGGACCGGATTGCGCGGTTATGTGCAATCCAAT
CAGTACACACATGCACGTAATCAGTATCATTGACTATCGCTTGGGAGGAT
CACTGCGAGTGCGAGTAGTGGCATAGAATGACTGGGATAACAGGTCCGGA
TTGCGCGGTTATGTGCAATTCAGGATCACTGCAAGTGGCATAGAATGCAT
ATTGATAGGATGACAGGGCCGGATGGCGCGGTTATGTGCAATTTGATAAA
TGTACACACACGTAGTAAGTGTCATTGATCCCCTCTTGAGAGGATCATTG
CGAGTGGCATAGAAATATGCAGTTTGATAAAATAAAACACACACACACAC
ACACACGCGCGCGCGCAATGTAATGCAACGCAACGCGCCGCACCCCTGGC
AGCTCGTGGACGCGAAGCACCGCGTGCTCTACGACCTGGGCACCTCCACC
GCGGAGGAAAGAGTTTCGTGGACAGACACAATCACCAAGGCGTCGCGGTT
CTCCCTCGGAGCAGGGCACGAAGAGCGACGGGACACTCTGAGCAGGCGCC
TCCTTGTTACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7697:2527..3937-

>mRNA_F-serratus_M_contig7697.18943.1 ID=mRNA_F-serratus_M_contig7697.18943.1|Name=mRNA_F-serratus_M_contig7697.18943.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig7697:2527..3937- (Fucus serratus male)
GAGCGCTCGAAAGACTCGCGACCTCGCATTTTCCACTTCAAGGAGCGCTC
GAAAGACTCGCGACCTCGCATTTTCCACTTCAAGCTCGTGGACGCGAAGC
ACCGCGTGCTCTACGACCTGGGCACCTCCACCGCGGAGGAAAGAGTTTCG
TGGACAGACACAATCACCAAGGCGTCGCGGTTCTCCCTCGGAGCAGGGCA
CGAAGAGCGACGGGACACTCTGAGCAGGCGCCTCCTTGTTACGCTCGTGG
ACGCGAAGCACCGCGTGCTCTACGACCTGGGCACCTCCACCGCGGAGGAA
AGAGTTTCGTGGACAGACACAATCACCAAGGCGTCGCGGTTCTCCCTCGG
AGCAGGGCACGAAGAGCGACGGGACACTCTGAGCAGGCGCCTCCTTGTTA
CG
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