mRNA_F-serratus_M_contig765.18910.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig765.18910.1
Unique NamemRNA_F-serratus_M_contig765.18910.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 8.340e-39
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 RKELRSCMAIPGARAGPESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVWEALGISEGRLGNLPM 249
            RKELRSCM  PGARAGPESSSRLQLLE SA+LENYLWPNFD + S+TEH+MS+ILLINSKFHEGVSVWE+LGISEGRLGNLP+
Sbjct:  361 RKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDAKKSSTEHLMSTILLINSKFHEGVSVWESLGISEGRLGNLPV 443
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A7S3R311_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R311_DUNTE)

HSP 1 Score: 85.1 bits (209), Expect = 5.350e-16
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   28 IPGARAGPESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVWEALGISEGRLGNL 243
            + GAR  P S  R+ LLE+S +LENYLWPNFDP T+T EH+MS IL++N KF EGV  W      EG   + 
Sbjct:   85 LAGARDEPPSLKRVMLLEVSQFLENYLWPNFDPATATFEHLMSIILMVNEKFREGVPAWTCFHTREGLFADF 156
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A835YQ44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ44_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.570e-15
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 RKELRSCMAIPGARAGPESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVWEALGISEGRLG 237
            ++EL SC   PG RA   ++ RLQLLE+++YLENYLWP+F    S+  H+MS +L+ N KF  G S W+A+G+ EG  G
Sbjct:   29 KEELHSCGPGPGRRAAANANRRLQLLEVTSYLENYLWPHFHATKSSLPHVMSIVLMANEKFARGFSFWDAVGV-EGAGG 106
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A498KD47_MALDO (Aquarius_N domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498KD47_MALDO)

HSP 1 Score: 78.6 bits (192), Expect = 3.990e-15
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   58 SSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW 204
            S R+ +LE+S YLENYLWPNFDPET+T EH+MS IL++N KF E V+ W
Sbjct:   94 SQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILIVNEKFRENVAAW 142
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: D8TS23_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TS23_VOLCA)

HSP 1 Score: 80.9 bits (198), Expect = 1.600e-14
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   34 GARAGPESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW---------------EALGISEGRLGNLPM 249
            GA     S  R+ LLE+S YLENYLWPNFDPET+T EH+MS +L++N KF E +  W                 L + EGR G L M
Sbjct:  158 GAGTRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENIPAWACFHTREDAFPGFFKRVLSLKEGREGKLRM 244
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A1U8AFV0_NELNU (intron-binding protein aquarius n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AFV0_NELNU)

HSP 1 Score: 80.1 bits (196), Expect = 2.920e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   22 MAIPGARAGPESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW 204
            + + G R  P S  R+ +LE+S YLENYLWPNFDPET+T EH+MS IL+IN KF E ++ W
Sbjct:   84 LLVKGGRK-PVSLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILMINEKFRENIAAW 143
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A7J7D8P8_TRIWF (Intron-binding protein aquarius-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D8P8_TRIWF)

HSP 1 Score: 75.5 bits (184), Expect = 5.750e-14
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   49 PESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW 204
            P    R+ +LE+S YLENYLWPNFDPE +T EH+MS IL++N KF E V+ W
Sbjct:   97 PVPLQRVMILEVSQYLENYLWPNFDPEIATFEHVMSMILMVNEKFRENVAAW 148
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BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A5N5HMT7_9ROSA (Intron-binding protein aquarius-like n=2 Tax=Pyrus TaxID=3766 RepID=A0A5N5HMT7_9ROSA)

HSP 1 Score: 78.6 bits (192), Expect = 9.790e-14
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   58 SSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW 204
            S R+ +LE+S YLENYLWPNFDPET+T EH+MS IL++N KF E V+ W
Sbjct:   32 SQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILIVNEKFRENVAAW 80
[Close]
BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: A0A2P2K8C4_RHIMU (Aquarius_N domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K8C4_RHIMU)

HSP 1 Score: 77.8 bits (190), Expect = 9.810e-14
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   49 PESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW 204
            P    R+ +LE+S YLENYLWPNFDPET+T EH+MS IL++N KF E V+ W
Sbjct:  102 PVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILMVNEKFRENVAAW 153
[Close]
BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Match: UPI0010A9E140 (LOW QUALITY PROTEIN: RNA helicase aquarius-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010A9E140)

HSP 1 Score: 78.6 bits (192), Expect = 9.970e-14
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   58 SSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLINSKFHEGVSVW 204
            S R+ +LE+S YLENYLWPNFDPET+T EH+MS IL++N KF E V+ W
Sbjct:   94 SQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILIVNEKFRENVAAW 142
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig765.18910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI8.340e-3985.54Aquarius intron-binding protein similar to aquariu... [more]
A0A7S3R311_DUNTE5.350e-1652.78Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A835YQ44_9STRA1.570e-1549.37Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A498KD47_MALDO3.990e-1565.31Aquarius_N domain-containing protein n=1 Tax=Malus... [more]
D8TS23_VOLCA1.600e-1445.98Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A1U8AFV0_NELNU2.920e-1457.38intron-binding protein aquarius n=1 Tax=Nelumbo nu... [more]
A0A7J7D8P8_TRIWF5.750e-1459.62Intron-binding protein aquarius-like n=1 Tax=Tript... [more]
A0A5N5HMT7_9ROSA9.790e-1465.31Intron-binding protein aquarius-like n=2 Tax=Pyrus... [more]
A0A2P2K8C4_RHIMU9.810e-1461.54Aquarius_N domain-containing protein n=1 Tax=Rhizo... [more]
UPI0010A9E1409.970e-1465.31LOW QUALITY PROTEIN: RNA helicase aquarius-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig765contigF-serratus_M_contig765:111852..112877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.7e-29
Seed eggNOG ortholog2880.D7FMQ9
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size528
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig765.18910.1prot_F-serratus_M_contig765.18910.1Fucus serratus malepolypeptideF-serratus_M_contig765 111852..112856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932295.4951859-CDS-F-serratus_M_contig765:111851..1122201622932295.4951859-CDS-F-serratus_M_contig765:111851..112220Fucus serratus maleCDSF-serratus_M_contig765 111852..112220 -
1690964239.7881458-CDS-F-serratus_M_contig765:111851..1122201690964239.7881458-CDS-F-serratus_M_contig765:111851..112220Fucus serratus maleCDSF-serratus_M_contig765 111852..112220 -
1622932295.5151088-CDS-F-serratus_M_contig765:112718..1128561622932295.5151088-CDS-F-serratus_M_contig765:112718..112856Fucus serratus maleCDSF-serratus_M_contig765 112719..112856 -
1690964239.803304-CDS-F-serratus_M_contig765:112718..1128561690964239.803304-CDS-F-serratus_M_contig765:112718..112856Fucus serratus maleCDSF-serratus_M_contig765 112719..112856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932295.533542-UTR-F-serratus_M_contig765:112856..1128771622932295.533542-UTR-F-serratus_M_contig765:112856..112877Fucus serratus maleUTRF-serratus_M_contig765 112857..112877 -
1690964239.8126612-UTR-F-serratus_M_contig765:112856..1128771690964239.8126612-UTR-F-serratus_M_contig765:112856..112877Fucus serratus maleUTRF-serratus_M_contig765 112857..112877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig765.18910.1

>prot_F-serratus_M_contig765.18910.1 ID=prot_F-serratus_M_contig765.18910.1|Name=mRNA_F-serratus_M_contig765.18910.1|organism=Fucus serratus male|type=polypeptide|length=169bp
MAIPGARAGPESSSRLQLLEISAYLENYLWPNFDPETSTTEHIMSSILLI
NSKFHEGVSVWEALGISEGRLGNLPMPVHDNDGNPSAEVVAVSSVNGGSG
GSKAGGNGKSPVIATGGQRFAAFFESVLGLAMGDWPRVLERHEEVERREG
RLAKGKRRDRGGRKGKGKG
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mRNA from alignment at F-serratus_M_contig765:111852..112877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig765.18910.1 ID=mRNA_F-serratus_M_contig765.18910.1|Name=mRNA_F-serratus_M_contig765.18910.1|organism=Fucus serratus male|type=mRNA|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig765:111852..112877- (Fucus serratus male)
CGGAAAGAGCTGAGGTCCTGCATGGCCATTCCAGGCGCTCGAGCTGGACC
GGAGTCGAGCTCACGCCTCCAGCTCTTGGAGATCAGCGCGTACCTGGAGA
ACTACCTCTGGCCTAACTTCGACCCGGAAACATCGACTACGGAGCACATC
ATGAGCTCGGTGAGGAATCTCATGTCCTCACTCTTGTATTTTCGTGGAAA
GCTTCTCCTTCCGAAAAACAACCTCCACAGCCTGCAACCACGCGGACACA
AGCACTGTTAAGGTGCCACTTTTACGTGCCTCATGTTATAATAGTGTGAG
GTCATCTTGTAGTCTTCTCCTTTAATATAGGCGTCGCCTCCTCGCGATCT
TGGAGTAAAGTGGATTCTGTTCAGCCGCCACGATTGGCCATATCGGTTCG
CCCTTCCATTCCACCTGATTGCGTGCAGCTCTTCAACGGTCGTAGTACTA
AAGCCGTTGCAACCACGCCATTCCCCCGTGTATGGCTGGTCAACGTTGGG
ACAATGCACCCGACGACTCTTTCGCGAACCCGGCGACTCGATCTGTCGCA
TCCATGTGAGCCGTGGTTTTCCTGCGACAACCCCTCACTATTTTTTATAT
TAGTTCTCTCATCGACAGACGCACGTGTAATTGACCCCATTCATAACGCC
CCCCTAGATCCTCCTCATCAACTCCAAATTCCACGAGGGCGTGAGCGTGT
GGGAAGCGCTCGGCATATCGGAGGGCCGCCTGGGAAACCTTCCCATGCCG
GTGCATGACAACGATGGAAATCCTTCGGCAGAAGTGGTAGCTGTTTCATC
GGTCAATGGCGGCAGCGGTGGATCGAAGGCAGGTGGCAATGGTAAGTCGC
CGGTAATAGCTACGGGGGGCCAACGTTTTGCGGCGTTCTTTGAAAGCGTC
CTGGGGCTCGCGATGGGAGACTGGCCAAGGGTCCTCGAGCGTCACGAGGA
GGTTGAGCGCCGCGAGGGCCGCCTAGCGAAGGGCAAGCGAAGAGATAGAG
GGGGGAGAAAGGGCAAGGGTAAAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig765:111852..112877-

>mRNA_F-serratus_M_contig765.18910.1 ID=mRNA_F-serratus_M_contig765.18910.1|Name=mRNA_F-serratus_M_contig765.18910.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig765:111852..112877- (Fucus serratus male)
ATGGCCATTCCAGGCGCTCGAGCTGGACCGGAGTCGAGCTCACGCCTCCA
GCTCTTGGAGATCAGCGCGTACCTGGAGAACTACCTCTGGCCTAACTTCG
ACCCGGAAACATCGACTACGGAGCACATCATGAGCTCGATGGCCATTCCA
GGCGCTCGAGCTGGACCGGAGTCGAGCTCACGCCTCCAGCTCTTGGAGAT
CAGCGCGTACCTGGAGAACTACCTCTGGCCTAACTTCGACCCGGAAACAT
CGACTACGGAGCACATCATGAGCTCGATCCTCCTCATCAACTCCAAATTC
CACGAGGGCGTGAGCGTGTGGGAAGCGCTCGGCATATCGGAGGGCCGCCT
GGGAAACCTTCCCATGCCGGTGCATGACAACGATGGAAATCCTTCGGCAG
AAGTGGTAGCTGTTTCATCGGTCAATGGCGGCAGCGGTGGATCGAAGGCA
GGTGGCAATGGTAAGTCGCCGGTAATAGCTACGGGGGGCCAACGTTTTGC
GGCGTTCTTTGAAAGCGTCCTGGGGCTCGCGATGGGAGACTGGCCAAGGG
TCCTCGAGCGTCACGAGGAGGTTGAGCGCCGCGAGGGCCGCCTAGCGAAG
GGCAAGCGAAGAGATAGAGGGGGGAGAAAGGGCAAGGGTAAAGGCATCCT
CCTCATCAACTCCAAATTCCACGAGGGCGTGAGCGTGTGGGAAGCGCTCG
GCATATCGGAGGGCCGCCTGGGAAACCTTCCCATGCCGGTGCATGACAAC
GATGGAAATCCTTCGGCAGAAGTGGTAGCTGTTTCATCGGTCAATGGCGG
CAGCGGTGGATCGAAGGCAGGTGGCAATGGTAAGTCGCCGGTAATAGCTA
CGGGGGGCCAACGTTTTGCGGCGTTCTTTGAAAGCGTCCTGGGGCTCGCG
ATGGGAGACTGGCCAAGGGTCCTCGAGCGTCACGAGGAGGTTGAGCGCCG
CGAGGGCCGCCTAGCGAAGGGCAAGCGAAGAGATAGAGGGGGGAGAAAGG
GCAAGGGTAAAGGC
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