mRNA_F-serratus_M_contig76.18871.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig76.18871.1
Unique NamemRNA_F-serratus_M_contig76.18871.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig76.18871.1 vs. uniprot
Match: D7FPG6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG6_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 5.490e-69
Identity = 188/455 (41.32%), Postives = 238/455 (52.31%), Query Frame = 3 
Query:    6 LLRDDAHVMDFPPVWINEYLDDLMEYAPSSGALGNRMHARVPPETICKTITDLMKKEGGTIRSRDLGRALNRIRVLEDGTTALGVIKESWGSLTRFLAEN-DMFLLGNSKSDPNDANIKQFTISLVDRQNSMKSVKLGEVMDESTSVEEATSDESGYHAGEEEEDGDQDGAWGYSHEGRAE-ATAESLSMEKMPQLKDRLREKGLPVSGNKAALIERLLASASASAGSGDS----TPRYRSSPPL------PDSSGVVR---------------------RREASDGWEVSRA---------------------GITGTPLVG----------LSESTEKPEERVVVDRDRELEDKHRRLNGHAALVRMVGEILDA---AQTEDGVVSSRDVGRELARMPSPDSPNQNALVCLKSRWPSLMAFLRACPSEFTVADIGADREFGVFRSVRAAAGSR 1169
            LLRDDAHV DF P+WINEYLDDLMEY P    +G     +V PE +C+ +  L++++GG+I SR LGR LN+I V EDGTTAL VIKE W  L+RF+ E+ DMF      S+P     K++TIS VD QNSMKS+KLGEVMDES S +                        G + +   E  T ESLS E +PQLK RLRE+GLPVSG K+ L+ RLL S +     GDS     PR R  PP+      P+   VV                       R    GW  + A                     G +G  + G          + + +  P    +     E   K RR NGHAALV +V  +L     A    G+ SSR +GR LA  PSP++PN+ AL+CLKSRWPSLM F+++CP EFTV DIG ++EFGV  + R    SR
Sbjct:  357 LLRDDAHVTDFEPIWINEYLDDLMEYVPPVEGIGANK-VKVAPEILCQVVMKLVEQQGGSINSRLLGRELNKISVDEDGTTALSVIKERWQVLSRFVFEHSDMFQAILPVSNPTKT--KEYTISKVDSQNSMKSLKLGEVMDESVSDDXXXXXXXXXXXXXXXXXXXXXMGGGSACDADEERVTEESLSGEVIPQLKTRLRERGLPVSGKKSVLVARLLDSMA-----GDSRPPPAPRRRGDPPIVGAGATPEGEAVVTPPDVGRGLGHGDANAADGGXXXRGLPGGWAAAAADALLAGDSSYLRLNMPSGGGSGGSGGRMQGHAGGRGNGGVVGDGSPAPRPPGLTA---EKAAKARRKNGHAALVGLVSRLLSEEARAPGFSGITSSRQLGRLLAAHPSPENPNETALMCLKSRWPSLMTFVKSCP-EFTVTDIGKEKEFGVVMNERGGWASR 799
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig76.18871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPG6_ECTSI5.490e-6941.32SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig76contigF-serratus_M_contig76:547368..551031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue2.5e-60
Seed eggNOG ortholog2880.D7FPG6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NYN domain
EggNOG OGs2APVF@1,2RZHJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1352
Cds size1185
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932286.7233682-UTR-F-serratus_M_contig76:547367..5473961622932286.7233682-UTR-F-serratus_M_contig76:547367..547396Fucus serratus maleUTRF-serratus_M_contig76 547368..547396 +
1690964235.655855-UTR-F-serratus_M_contig76:547367..5473961690964235.655855-UTR-F-serratus_M_contig76:547367..547396Fucus serratus maleUTRF-serratus_M_contig76 547368..547396 +
1622932286.8446531-UTR-F-serratus_M_contig76:550893..5510311622932286.8446531-UTR-F-serratus_M_contig76:550893..551031Fucus serratus maleUTRF-serratus_M_contig76 550894..551031 +
1690964235.7313335-UTR-F-serratus_M_contig76:550893..5510311690964235.7313335-UTR-F-serratus_M_contig76:550893..551031Fucus serratus maleUTRF-serratus_M_contig76 550894..551031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932286.7415993-CDS-F-serratus_M_contig76:547396..5474611622932286.7415993-CDS-F-serratus_M_contig76:547396..547461Fucus serratus maleCDSF-serratus_M_contig76 547397..547461 +
1690964235.6709437-CDS-F-serratus_M_contig76:547396..5474611690964235.6709437-CDS-F-serratus_M_contig76:547396..547461Fucus serratus maleCDSF-serratus_M_contig76 547397..547461 +
1622932286.7587066-CDS-F-serratus_M_contig76:547850..5480251622932286.7587066-CDS-F-serratus_M_contig76:547850..548025Fucus serratus maleCDSF-serratus_M_contig76 547851..548025 +
1690964235.6800315-CDS-F-serratus_M_contig76:547850..5480251690964235.6800315-CDS-F-serratus_M_contig76:547850..548025Fucus serratus maleCDSF-serratus_M_contig76 547851..548025 +
1622932286.8067226-CDS-F-serratus_M_contig76:548492..5486121622932286.8067226-CDS-F-serratus_M_contig76:548492..548612Fucus serratus maleCDSF-serratus_M_contig76 548493..548612 +
1690964235.6889682-CDS-F-serratus_M_contig76:548492..5486121690964235.6889682-CDS-F-serratus_M_contig76:548492..548612Fucus serratus maleCDSF-serratus_M_contig76 548493..548612 +
1622932286.8188024-CDS-F-serratus_M_contig76:549351..5495211622932286.8188024-CDS-F-serratus_M_contig76:549351..549521Fucus serratus maleCDSF-serratus_M_contig76 549352..549521 +
1690964235.7030988-CDS-F-serratus_M_contig76:549351..5495211690964235.7030988-CDS-F-serratus_M_contig76:549351..549521Fucus serratus maleCDSF-serratus_M_contig76 549352..549521 +
1622932286.8327804-CDS-F-serratus_M_contig76:550238..5508931622932286.8327804-CDS-F-serratus_M_contig76:550238..550893Fucus serratus maleCDSF-serratus_M_contig76 550239..550893 +
1690964235.7217565-CDS-F-serratus_M_contig76:550238..5508931690964235.7217565-CDS-F-serratus_M_contig76:550238..550893Fucus serratus maleCDSF-serratus_M_contig76 550239..550893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig76.18871.1prot_F-serratus_M_contig76.18871.1Fucus serratus malepolypeptideF-serratus_M_contig76 547397..550893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig76.18871.1

>prot_F-serratus_M_contig76.18871.1 ID=prot_F-serratus_M_contig76.18871.1|Name=mRNA_F-serratus_M_contig76.18871.1|organism=Fucus serratus male|type=polypeptide|length=395bp
MDFPPVWINEYLDDLMEYAPSSGALGNRMHARVPPETICKTITDLMKKEG
GTIRSRDLGRALNRIRVLEDGTTALGVIKESWGSLTRFLAENDMFLLGNS
KSDPNDANIKQFTISLVDRQNSMKSVKLGEVMDESTSVEEATSDESGYHA
GEEEEDGDQDGAWGYSHEGRAEATAESLSMEKMPQLKDRLREKGLPVSGN
KAALIERLLASASASAGSGDSTPRYRSSPPLPDSSGVVRRREASDGWEVS
RAGITGTPLVGLSESTEKPEERVVVDRDRELEDKHRRLNGHAALVRMVGE
ILDAAQTEDGVVSSRDVGRELARMPSPDSPNQNALVCLKSRWPSLMAFLR
ACPSEFTVADIGADREFGVFRSVRAAAGSRSLAGFASNEDEKQR*
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mRNA from alignment at F-serratus_M_contig76:547368..551031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig76.18871.1 ID=mRNA_F-serratus_M_contig76.18871.1|Name=mRNA_F-serratus_M_contig76.18871.1|organism=Fucus serratus male|type=mRNA|length=3664bp|location=Sequence derived from alignment at F-serratus_M_contig76:547368..551031+ (Fucus serratus male)
AGGACCTCCTGCGGGATGACGCGCATGTGATGGACTTCCCCCCGGTGTGG
ATCAACGAGTACCTGGACGATCTCATGGAGTACGCACCGTCCAGGTGAAG
ATTCGATTGAATCGCCCCGCCACCCGAACTTCTCATTTTGGGTTGTCCGT
CCGTGTTTTTGTTTTGTTTTCATATCCAATGCTGCTGTTTTAGAACGTAG
CACACGCGTTTGTTTTCATCCTTGCTGAGTGGGGTGTTTGGCAAGCGTGG
CGGCGGGGAAATGCTATAACGGATGTAAAGTACAGTATGTATCAGCATCG
TCTTAAGTCGCCCGCGACCAAAGCTCGGCGAGGTCAATCAATCAAGCGCC
CGCGGACCGCTCCCCTCGTCCATCTTGCGCACTAATTCTCACAACTACCC
AAAACCGTCCCGAGCTCGCCCCTTGTGTTGTGGCTTCGCTTCCATCGTGT
CCCGCGCGCTCGTGGCTCCGGCTGATCTGACAGCGGGGCGCTGGGCAACC
GGATGCACGCGAGGGTTCCGCCCGAAACGATTTGCAAAACAATCACCGAT
CTCATGAAGAAAGAGGGGGGCACCATCCGCTCGCGTGATCTCGGTCGAGC
GCTCAACAGGATCCGCGTCCTTGAGGATGGAACGACGGCGTTGGGGGTCA
TCAAAGAGGTACGCGTATCTTAGTGTATCGCGATGCGTTGCATGTCGAGA
ATTGGCTGGACTGCGACTACTCGTTCGAAAAAAATCGTCCTAACGCGGTA
AAACCAGAGCGCTTCTGTTTCCGCGCCGTCTGGTCGTGTAAGCGGGGGAT
TCCCGAACGACCCTTTATCCCCCCTCACGTAGACTAAGAGGTTTTCAGTC
GCAGACATCACCGACATACTCTTCCGACTGTTTTCCGCTGTCGCCTGTGA
CCGGCGTGACTCTCTCGCATCGGCGATTCCGTTCGTTTCACCACTGCGAT
CGACCCTGGGCCCGGCGGCGCAAAGTCAATCGCTAGAACCCCCCCCCCCC
CTCTTTCTCTCTTTCTCCCAACATGCGCGTTTTTTTGTGTTCGTGGTTTG
GACCTTTCGCGCCCTCAACTCAATGTCTCTCTCCTGCTCGTGGTTTTTTG
TCTGCTTCCTCTTTTTGCTTGGAAGAGCTGGGGAAGTCTCACAAGATTCT
TGGCGGAAAACGACATGTTCCTGCTGGGAAACTCCAAGTCGGACCCGAAC
GACGCGAACATCAAGCAGTTCACGATCTCGCTGGTTGATAGGCAGGCGCG
TGTCAGAGTTTCGTCTTTTGTTGCTGTTAACAGTTTATTTCCGTTCGCGG
CGTACAGTATTATTAATAATAACTGTGTTACACATTACTATTTTACTAGT
TGACGATTACTAGTTGGCTATTACTAGTTGGCTATTACTAGTTGGGGGGG
TAGGGAGGGAAAGGGGAGGGGGGGGGAGAAACGCGATTTTTTGCAACCGA
TGGCATAGAAGTGGCAGACTTATGCATGCACTCTGTATTGGTCGGCAGCT
TGTGCAACAGTACGCCAGGCGTGCGTCGTGGCACTTGATGGGGTAGTTCG
ACCATCGCGCCCCGTCGGCGTCTCGCCATCTCGTGTCGGATCGAGCATCG
AGCATACTGTCGCCCCGCCCTCCCGCCCTCCCGTTCTATTTGTACATTAT
TGCATTAGCTCTTATCATTACAGTCGATGTTCGACGGGTGAATGGCGACA
CTAAAGTAGGGCTTCCCTCCCCTCCCCCACCCCTACACACTATCAATGCA
CGCAGACGCTCCGAGGCCGCTGCCATGCATCCCTTCCATCTATGGGAACA
CTCGGTTAAAAATGGGCGCCGCGGCGTGTCGCATCTATTTAAATTAATAG
CACTTGGTACATTCTCATGATGTCTACAGCAGCATGTACCCAACCAAGCC
CACTTACCTGTATTTCTGTCGGCGACGAAATTTCTGCTTTTTTTTTTTTT
TGCTGGTGCGAACGAACGCGGGGCTACCCCTCAGAACTCCATGAAGTCGG
TCAAGCTAGGGGAGGTGATGGACGAGTCGACTTCGGTGGAGGAGGCGACG
AGTGACGAGTCAGGGTACCATGCAGGCGAAGAAGAGGAAGATGGAGACCA
AGATGGAGCGTGGGGATACAGCCACGAGGGTCGGGCGGAGGCAACAGCAG
AGAGGTAAACGGACGCGCGAGTGTGTGGCTGGGTTCGGTACTGACTGCTT
GAAACGCTTTGTGGTGTTGTGTTTGTGCTACTGCAACTGTCATTGTACAT
TCCTCCTGAGGGGGATCAATGAAACTTGTTACGAAGACCTGTGTGTGTGC
GTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTAAATT
GCACATAACCACGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACT
CGCATTGATCCTCCCGAGGGGGGATCAATGAAACTTGTTACGAAGACCTG
TGTGTGTGTGTGTGTATTTATTAAATTGCACATGACCACGCAATCCGGCC
CTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGAGGGG
ATCAATGATGTGTGTTTGTGTGTGTGCGTTCTGGCTGGCTTGGAAGTGCT
GTGGGGGGAGTGATAGATTGCCAGAGTGCGATTTCCGACGGCGGAGGAGG
AAGATTAGGAGGACCGAACGAGCTTGGTTTGACGATGACGTCCTTATTCG
ATAGCTTCGCATGTACCCTTAGGATTACACTTTGATTGCTATTATTATTA
TGGTGATGATTTTTTTTACACGGCATCTTACTGATTTGAAGAAATAACCC
CCCCCCCCCCTTTTTTCTGTCAAAAAAAGTCTTAAAACGTCCCTGCTGAT
GCATACAATAACCCTGAACAGCTTGTCGATGGAGAAGATGCCGCAGCTGA
AGGACCGACTCCGGGAGAAGGGCCTTCCTGTTTCGGGAAACAAGGCCGCC
CTGATCGAGCGACTCTTGGCGTCGGCGTCAGCGTCAGCGGGTAGCGGAGA
CTCCACACCACGATACCGCTCGTCGCCGCCTTTGCCCGATAGTTCCGGCG
TTGTTCGACGCCGAGAGGCGTCGGACGGATGGGAGGTGTCGAGGGCAGGG
ATCACTGGCACCCCGCTCGTCGGCCTGTCCGAATCCACGGAGAAGCCAGA
GGAACGGGTTGTCGTTGACAGGGACAGGGAGCTAGAGGACAAACATCGGC
GATTGAACGGCCACGCCGCACTGGTGAGGATGGTCGGCGAGATCCTCGAC
GCGGCGCAGACGGAAGACGGCGTTGTGTCCTCGCGGGACGTCGGTCGAGA
GTTGGCGCGCATGCCGTCGCCGGACAGCCCTAACCAGAACGCCCTCGTGT
GCCTCAAGTCGAGGTGGCCGTCTCTCATGGCCTTTCTCAGGGCCTGCCCT
TCCGAGTTCACCGTGGCTGACATTGGGGCGGACCGAGAGTTTGGCGTGTT
CAGATCAGTCAGGGCGGCGGCGGGGTCCCGTTCATTGGCCGGCTTCGCGT
CGAATGAGGATGAGAAACAAAGATAGCTCTCTCTCTCTCTCTACGCAAAG
TACGTCTGGCATCGCTTCTTTGTCAGAAGGGCAGGGTGTGATGCACCATA
TCGAGGTACCCTATTATAGTCCGGGTGTAGGGGTAAAAGAGCTCCGAGCA
ATGCAATTTTGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig76:547368..551031+

>mRNA_F-serratus_M_contig76.18871.1 ID=mRNA_F-serratus_M_contig76.18871.1|Name=mRNA_F-serratus_M_contig76.18871.1|organism=Fucus serratus male|type=CDS|length=2370bp|location=Sequence derived from alignment at F-serratus_M_contig76:547368..551031+ (Fucus serratus male)
ATGGACTTCCCCCCGGTGTGGATCAACGAGTACCTGGACGATCTCATGGA
GTACGCACCGTCCAGATGGACTTCCCCCCGGTGTGGATCAACGAGTACCT
GGACGATCTCATGGAGTACGCACCGTCCAGCGGGGCGCTGGGCAACCGGA
TGCACGCGAGGGTTCCGCCCGAAACGATTTGCAAAACAATCACCGATCTC
ATGAAGAAAGAGGGGGGCACCATCCGCTCGCGTGATCTCGGTCGAGCGCT
CAACAGGATCCGCGTCCTTGAGGATGGAACGACGGCGTTGGGGGTCATCA
AAGAGCGGGGCGCTGGGCAACCGGATGCACGCGAGGGTTCCGCCCGAAAC
GATTTGCAAAACAATCACCGATCTCATGAAGAAAGAGGGGGGCACCATCC
GCTCGCGTGATCTCGGTCGAGCGCTCAACAGGATCCGCGTCCTTGAGGAT
GGAACGACGGCGTTGGGGGTCATCAAAGAGAGCTGGGGAAGTCTCACAAG
ATTCTTGGCGGAAAACGACATGTTCCTGCTGGGAAACTCCAAGTCGGACC
CGAACGACGCGAACATCAAGCAGTTCACGATCTCGCTGGTTGATAGGCAG
AGCTGGGGAAGTCTCACAAGATTCTTGGCGGAAAACGACATGTTCCTGCT
GGGAAACTCCAAGTCGGACCCGAACGACGCGAACATCAAGCAGTTCACGA
TCTCGCTGGTTGATAGGCAGAACTCCATGAAGTCGGTCAAGCTAGGGGAG
GTGATGGACGAGTCGACTTCGGTGGAGGAGGCGACGAGTGACGAGTCAGG
GTACCATGCAGGCGAAGAAGAGGAAGATGGAGACCAAGATGGAGCGTGGG
GATACAGCCACGAGGGTCGGGCGGAGGCAACAGCAGAGAGAACTCCATGA
AGTCGGTCAAGCTAGGGGAGGTGATGGACGAGTCGACTTCGGTGGAGGAG
GCGACGAGTGACGAGTCAGGGTACCATGCAGGCGAAGAAGAGGAAGATGG
AGACCAAGATGGAGCGTGGGGATACAGCCACGAGGGTCGGGCGGAGGCAA
CAGCAGAGAGCTTGTCGATGGAGAAGATGCCGCAGCTGAAGGACCGACTC
CGGGAGAAGGGCCTTCCTGTTTCGGGAAACAAGGCCGCCCTGATCGAGCG
ACTCTTGGCGTCGGCGTCAGCGTCAGCGGGTAGCGGAGACTCCACACCAC
GATACCGCTCGTCGCCGCCTTTGCCCGATAGTTCCGGCGTTGTTCGACGC
CGAGAGGCGTCGGACGGATGGGAGGTGTCGAGGGCAGGGATCACTGGCAC
CCCGCTCGTCGGCCTGTCCGAATCCACGGAGAAGCCAGAGGAACGGGTTG
TCGTTGACAGGGACAGGGAGCTAGAGGACAAACATCGGCGATTGAACGGC
CACGCCGCACTGGTGAGGATGGTCGGCGAGATCCTCGACGCGGCGCAGAC
GGAAGACGGCGTTGTGTCCTCGCGGGACGTCGGTCGAGAGTTGGCGCGCA
TGCCGTCGCCGGACAGCCCTAACCAGAACGCCCTCGTGTGCCTCAAGTCG
AGGTGGCCGTCTCTCATGGCCTTTCTCAGGGCCTGCCCTTCCGAGTTCAC
CGTGGCTGACATTGGGGCGGACCGAGAGTTTGGCGTGTTCAGATCAGTCA
GGGCGGCGGCGGGGTCCCGTTCATTGGCCGGCTTCGCGTCGAATGAGGAT
GAGAAACAAAGATAGCTTGTCGATGGAGAAGATGCCGCAGCTGAAGGACC
GACTCCGGGAGAAGGGCCTTCCTGTTTCGGGAAACAAGGCCGCCCTGATC
GAGCGACTCTTGGCGTCGGCGTCAGCGTCAGCGGGTAGCGGAGACTCCAC
ACCACGATACCGCTCGTCGCCGCCTTTGCCCGATAGTTCCGGCGTTGTTC
GACGCCGAGAGGCGTCGGACGGATGGGAGGTGTCGAGGGCAGGGATCACT
GGCACCCCGCTCGTCGGCCTGTCCGAATCCACGGAGAAGCCAGAGGAACG
GGTTGTCGTTGACAGGGACAGGGAGCTAGAGGACAAACATCGGCGATTGA
ACGGCCACGCCGCACTGGTGAGGATGGTCGGCGAGATCCTCGACGCGGCG
CAGACGGAAGACGGCGTTGTGTCCTCGCGGGACGTCGGTCGAGAGTTGGC
GCGCATGCCGTCGCCGGACAGCCCTAACCAGAACGCCCTCGTGTGCCTCA
AGTCGAGGTGGCCGTCTCTCATGGCCTTTCTCAGGGCCTGCCCTTCCGAG
TTCACCGTGGCTGACATTGGGGCGGACCGAGAGTTTGGCGTGTTCAGATC
AGTCAGGGCGGCGGCGGGGTCCCGTTCATTGGCCGGCTTCGCGTCGAATG
AGGATGAGAAACAAAGATAG
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