mRNA_F-serratus_M_contig76.18862.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig76.18862.1
Unique NamemRNA_F-serratus_M_contig76.18862.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 7.880e-50
Identity = 82/138 (59.42%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQPP-KGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHWV 411
            GHVYLM P SRNF+ TD FQ   +  I  CPHC QSRGP AVR R E NT   VL+ YG G WP   +YER E+  NGN+ E ++ISVRHGICGDPEQ   +G+N YG+EN  YPV   Y EG +I++K+VVSTYHWV
Sbjct:    6 GHVYLMVPVSRNFWATDAFQESSYSDINWCPHCFQSRGPSAVRERGEENTEEAVLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWV 143          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.760e-37
Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQPP-KGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
            GHVY+M P SR  + T+ FQ      I  CPHC QSRGP A+RAR             G   WP    +  GE A NGN++E D+++ RHG+CGDPEQ   +GSN YG+EN NYPVL TY EG ++++K+VVSTYHW
Sbjct:   25 GHVYMMNPVSRQLWGTEAFQEPGSPDINYCPHCFQSRGPAAIRARG------------GDQPWP----HFNGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHW 145          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.080e-37
Identity = 61/114 (53.51%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   70 FEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQ-PPKGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
            FE +  CP C  +RGP  V+ R   NT   VL+EYG G WPL+ AYE+GE+A+NGN+LE+D+I+ RHGICGDPEQ   +G+N Y   NG++P+L TYQEG V+++K+ ++ YHW
Sbjct:   11 FERMEYCPSCYNARGPTYVKERGMVNTDPAVLAEYGDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHW 124          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.170e-36
Identity = 67/138 (48.55%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGG-AWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQ-PPKGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
            GH+  M P SR + Y  VF+ WDF  I  CPHC  +RGP  V+ RA+A T   VL+EYGGG  +PL      G+ ADNGN+LE D+I+ RHGICGDPEQ   +GSN Y   N  + VL +++ G V++M ++++ YHW
Sbjct:   24 GHIMQMYPISRQYSYGPVFKEWDFPGIDYCPHCYNARGPDYVKERAKAKTDPAVLNEYGGGDEYPLYF----GDFADNGNYLETDEIAKRHGICGDPEQNADEGSNVYSTANIGWDVLGSFKSGEVLEMDIIMNAYHW 157          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.250e-35
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQPP-KGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
             HVY+M P SR  + T  FQ+     I  CPHC QSRGP AVRAR             G   WP    +  GE A+NGN++E ++++ RHGICGDPEQ   + SN YG+EN NYPV  TY EG ++++K+VVSTYHW
Sbjct:   28 SHVYMMTPVSRQLWGTSAFQDAGSPDINYCPHCFQSRGPAAVRARG------------GDKPWP----HFNGERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHW 148          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.910e-35
Identity = 66/138 (47.83%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGG-AWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQ-PPKGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
            GH+  M P SR + Y  VF+ WDF  I  CPHC  +RGP  V+ RA+A T   VL+EYGGG  +PL      G+ ADNGN+LE D+I+ RHGICGDPEQ   +GSN Y   N  + VL +++ G V+++ ++++ YHW
Sbjct:   24 GHIMQMYPISRQYSYGPVFKEWDFPGIDYCPHCYNARGPDYVKERAKAKTDPAVLNEYGGGDEYPLYF----GDFADNGNYLETDEIAKRHGICGDPEQNADEGSNVYSTANIGWDVLDSFKSGEVLEIDIIMNAYHW 157          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: D7G892_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G892_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.390e-33
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQ-PPKGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTY 402
            G  Y++ P SR   ++ VFQ+   E    CP CL S GP  V+ +    T   +L+EYG G WPL  AY +GE+ DNGNF ERD+IS RHGICGDP+Q   + +NAY     ++  L T +EG V+ +KVVV+ Y
Sbjct:   21 GGTYVLTPTSRPVLHSAVFQSETAEKFEDCPGCLDSGGPVYVKEKGIGYTNGGLLAEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEY 155          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.650e-33
Identity = 66/137 (48.18%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQPP-KGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
             H Y+M P SR  + T  FQ      I  CPHC QSRGP A+RAR             G   WP    +  GE A+NGN++E ++++ RHGICGDPEQ   + SN YG EN NYPVL TY EG +++ K+VVSTYHW
Sbjct:   27 SHAYMMIPVSRQLWGTSAFQEVGSPDINYCPHCFQSRGPAAIRARG------------GDKPWP----HFNGERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHW 147          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.550e-32
Identity = 66/137 (48.18%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 GHVYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQPP-KGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTYHW 408
             H Y+M P SR  + T  FQ      I  CPHC QSRG  AVRAR             G   WP    +  G+ A NGN++E ++++ RHGICGDPEQ   +GSN YG EN NYPVL TY EG +++ K+VVSTYHW
Sbjct:   27 SHAYMMIPVSRQLWGTTAFQEAGSPNINYCPHCFQSRGAAAVRARG------------GDQPWP----HFNGDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHW 147          
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.500e-30
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    7 VYLMEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVLSEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQ-PPKGSNAYGRENGNYPVLATYQEGSVIKMKVVVSTY 402
             Y++ P SR   ++ VFQ+   E    CP CL S GP  V+ +    T   +L+EYG G WPL  AY +GE+ DNGNF ERD+IS RHGICGDP+Q   + +NAY     ++  L T +EG V+ +KVVV+ Y
Sbjct:   23 TYVLTPTSRPVLHSAVFQSETAEKFEDCPGCLNSGGPVYVKEKGIGYTNGGLLAEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFSLESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEY 155          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig76.18862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE7.880e-5059.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LD67_ECTSI2.760e-3750.36EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI3.080e-3753.51EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FRE8_ECTSI6.170e-3648.55EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI1.250e-3548.91EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE3.910e-3547.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G892_ECTSI1.390e-3345.93EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM92_ECTSI6.650e-3348.18EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE6.550e-3248.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFL8_9PHAE2.500e-3045.86CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig76contigF-serratus_M_contig76:402894..403803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue3.1e-39
Seed eggNOG ortholog2880.D7FSZ8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
Ec32 ortholog descriptionCellulose/chitin-binding protein
Ec32 orthologEc-24_004240.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size414
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig76.18862.1prot_F-serratus_M_contig76.18862.1Fucus serratus malepolypeptideF-serratus_M_contig76 402909..403803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932285.2754724-UTR-F-serratus_M_contig76:402893..4029081622932285.2754724-UTR-F-serratus_M_contig76:402893..402908Fucus serratus maleUTRF-serratus_M_contig76 402894..402908 +
1690964234.9962113-UTR-F-serratus_M_contig76:402893..4029081690964234.9962113-UTR-F-serratus_M_contig76:402893..402908Fucus serratus maleUTRF-serratus_M_contig76 402894..402908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932285.2907548-CDS-F-serratus_M_contig76:402908..4029581622932285.2907548-CDS-F-serratus_M_contig76:402908..402958Fucus serratus maleCDSF-serratus_M_contig76 402909..402958 +
1690964235.0096788-CDS-F-serratus_M_contig76:402908..4029581690964235.0096788-CDS-F-serratus_M_contig76:402908..402958Fucus serratus maleCDSF-serratus_M_contig76 402909..402958 +
1622932285.308303-CDS-F-serratus_M_contig76:403262..4034911622932285.308303-CDS-F-serratus_M_contig76:403262..403491Fucus serratus maleCDSF-serratus_M_contig76 403263..403491 +
1690964235.0205343-CDS-F-serratus_M_contig76:403262..4034911690964235.0205343-CDS-F-serratus_M_contig76:403262..403491Fucus serratus maleCDSF-serratus_M_contig76 403263..403491 +
1622932285.3294432-CDS-F-serratus_M_contig76:403683..4038031622932285.3294432-CDS-F-serratus_M_contig76:403683..403803Fucus serratus maleCDSF-serratus_M_contig76 403684..403803 +
1690964235.0313-CDS-F-serratus_M_contig76:403683..4038031690964235.0313-CDS-F-serratus_M_contig76:403683..403803Fucus serratus maleCDSF-serratus_M_contig76 403684..403803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig76.18862.1

>prot_F-serratus_M_contig76.18862.1 ID=prot_F-serratus_M_contig76.18862.1|Name=mRNA_F-serratus_M_contig76.18862.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MEPYSRNFYYTDVFQNWDFEYITSCPHCLQSRGPGAVRARAEANTPADVL
SEYGGGAWPLKIAYERGELADNGNFLERDDISVRHGICGDPEQPPKGSNA
YGRENGNYPVLATYQEGSVIKMKVVVSTYHWVS
back to top

mRNA from alignment at F-serratus_M_contig76:402894..403803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig76.18862.1 ID=mRNA_F-serratus_M_contig76.18862.1|Name=mRNA_F-serratus_M_contig76.18862.1|organism=Fucus serratus male|type=mRNA|length=910bp|location=Sequence derived from alignment at F-serratus_M_contig76:402894..403803+ (Fucus serratus male)
GGTCATGTGTACCTCATGGAACCCTACTCCCGCAATTTCTACTACACTGA TGTGTTCCAGAACTGGTGAGATGCTCATTTCGGTTTTATCGGGACTAGTT CGGGGAAAGGAACACGAGCCTGCAATGTGCCCACTTCTCCTCTCGTCGAG GCAACCCCACTTATTTTATTTATTTACAGTTAGTGATTATTGCTCGAGGT CTTGGTGACTGACCTTACAGCTCGTCGTGTGGCGGTATCCACACACTTTG AAGATCTGCTTCGACCGGATCGCGATGAACGGTCTATTTGCCGGTCATTC GGTTGGACATTTAAAAATAGCATACTCGTCACCCATCTCTCACCCCCGCA TACGACGAACGCTGCGCAGGGACTTCGAGTACATCACGTCCTGCCCCCAC TGCCTGCAGTCGAGAGGGCCCGGTGCGGTGCGCGCTCGTGCCGAAGCCAA CACTCCGGCTGATGTACTGAGTGAATACGGCGGCGGAGCCTGGCCGCTCA AGATCGCCTACGAGCGAGGGGAGCTCGCGGACAACGGAAATTTTCTCGAA CGCGACGACATCTCTGTTCGACATGGTATCTGCGGTGACCCGGAGCAGGT AAAAAGGCATTTTCGAGTGGTGGGCGGTCGGGAAATCCATGAAGAATGAG CAGATTAGTGTGCAGCACAATAAGGTGCTCGATATCGTCGTCGGACTCAA TCGTCAAACTTTCGAAGAGAGACGGTGTCTTATTTTTCTTACGGGTGCTT CTTTAGCTGCTCTTCCCCATCTTCACTTATTCACAGTCAGCCGCCGAAGG GGTCGAATGCCTACGGCAGGGAGAACGGTAACTATCCTGTTCTAGCGACC TACCAGGAAGGTTCGGTCATCAAGATGAAGGTGGTGGTGTCTACATACCA CTGGGTGAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig76:402894..403803+

>mRNA_F-serratus_M_contig76.18862.1 ID=mRNA_F-serratus_M_contig76.18862.1|Name=mRNA_F-serratus_M_contig76.18862.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig76:402894..403803+ (Fucus serratus male)
ATGGAACCCTACTCCCGCAATTTCTACTACACTGATGTGTTCCAGAACTG
ATGGAACCCTACTCCCGCAATTTCTACTACACTGATGTGTTCCAGAACTG
GGACTTCGAGTACATCACGTCCTGCCCCCACTGCCTGCAGTCGAGAGGGC
CCGGTGCGGTGCGCGCTCGTGCCGAAGCCAACACTCCGGCTGATGTACTG
AGTGAATACGGCGGCGGAGCCTGGCCGCTCAAGATCGCCTACGAGCGAGG
GGAGCTCGCGGACAACGGAAATTTTCTCGAACGCGACGACATCTCTGTTC
GACATGGTATCTGCGGTGACCCGGAGCAGGGACTTCGAGTACATCACGTC
CTGCCCCCACTGCCTGCAGTCGAGAGGGCCCGGTGCGGTGCGCGCTCGTG
CCGAAGCCAACACTCCGGCTGATGTACTGAGTGAATACGGCGGCGGAGCC
TGGCCGCTCAAGATCGCCTACGAGCGAGGGGAGCTCGCGGACAACGGAAA
TTTTCTCGAACGCGACGACATCTCTGTTCGACATGGTATCTGCGGTGACC
CGGAGCAGCCGCCGAAGGGGTCGAATGCCTACGGCAGGGAGAACGGTAAC
TATCCTGTTCTAGCGACCTACCAGGAAGGTTCGGTCATCAAGATGAAGGT
GGTGGTGTCTACATACCACTGGGTGAGCCCGCCGAAGGGGTCGAATGCCT
ACGGCAGGGAGAACGGTAACTATCCTGTTCTAGCGACCTACCAGGAAGGT
TCGGTCATCAAGATGAAGGTGGTGGTGTCTACATACCACTGGGTGAGC
back to top